SRS12868177 SAMN25887256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-324UPNN4V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868175 SAMN25887073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2XAEJVG3X/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868174 SAMN25887223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2W7UBM2BP/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868173 SAMN25887257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-2VQYKFZQ9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868172 SAMN25887074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2UC5CVWX9/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868171 SAMN25886502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-2RF3YYJSF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868170 SAMN25887075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2K8F6PCN2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868169 SAMN25886462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-2J9PD2PVY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868168 SAMN25886723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-2H2Z5CG8C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868167 SAMN25886456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-2GQ7PUQKG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868191 SAMN25886230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6QQKPV7R4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868190 SAMN25886347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6PJF5VMTR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868176 SAMN25886245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2XBP63G4Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868178 SAMN25886583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-328HWHUEV/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868179 SAMN25886355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-32DRADE6T/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868180 SAMN25887072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-34XUKAASP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868181 SAMN25886610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-35HNKHAC2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868182 SAMN25886582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-36HRSXPDN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868183 SAMN25887222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-37P3Z29FA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868184 SAMN25887071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-37ZV2TDHX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868185 SAMN25887221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-389Y273GD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868186 SAMN25886498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-38HXESK7G/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868187 SAMN25887030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6NPVGZ59A/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868188 SAMN25887200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6P6MJUKDD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868189 SAMN25886708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6Q9RWPCER/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868192 SAMN25887029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6RR4KGJYE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868193 SAMN25887199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6SN2YWKZ8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868194 SAMN25887198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6TB9MWMVT/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868195 SAMN25886707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6VAQ3PHKR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868196 SAMN25886229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6VGH35YA7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868197 SAMN25886476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-6WY4XZAMD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868198 SAMN25886605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-6XBBFH8G3/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868199 SAMN25886475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-6YWHUBHC2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868200 SAMN25887028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6Z5HNWCVV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868202 SAMN25887027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-74JR3Z47P/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868203 SAMN25886228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-738SAWCNY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868201 SAMN25886572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-6ZZT88WZM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868204 SAMN25886346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-74PMBRYK7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868205 SAMN25886227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-75ZGBZSGE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868206 SAMN25886369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-75HZEZ7KA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868207 SAMN25886345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-76AQPUA92/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868208 SAMN25887197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-76ZVCGT8T/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868209 SAMN25886706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-77RP5VY39/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868210 SAMN25886571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-77TKFCDNB/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868211 SAMN25886226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-798JH46FQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868212 SAMN25886225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-79EAAPT5H/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868213 SAMN25886224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-79TEA4UM8/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868214 SAMN25887196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-79N74FTHJ/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868215 SAMN25887026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7ASTDY3UB/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868216 SAMN25887025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7AZZHN24A/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868217 SAMN25887024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7BYWURGH6/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868218 SAMN25887195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-7FNME7GRR/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868219 SAMN25886438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B32TPB72J/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868220 SAMN25886560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-B3RYBQ94W/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868221 SAMN25886979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-B75PS293P/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868222 SAMN25887179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-B8986FN54/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868223 SAMN25886214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-B8AEYYAP8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868224 SAMN25886978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-B8N2P7HEP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868225 SAMN25886977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-B8NYFUAZG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868226 SAMN25887178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-B986QZ8X8/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868227 SAMN25886213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-B9A7SAWQ7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868228 SAMN25887177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-B9CZME6HW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868229 SAMN25886976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BAFGY5NZX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868230 SAMN25886975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BB9QAHV7C/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868231 SAMN25886212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BBDDZPN3V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868232 SAMN25886134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-BCW8WGNBH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868233 SAMN25886211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BF6QRFZN9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868234 SAMN25886334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BDWTTEFNM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868235 SAMN25886974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BFQ6Y374V/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868236 SAMN25886559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BGJH3NTWM/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868237 SAMN25886973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BHZ9PSPBX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868238 SAMN25886558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BJP23HTGK/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868239 SAMN25886690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-BKTUV2X7V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868240 SAMN25886972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BMBCXS962/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868241 SAMN25887176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-BN7XC7KW3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868242 SAMN25887251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-BP8B9BH2U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868243 SAMN25887250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-BTJMW6D95/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868244 SAMN25886437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BTYD6R6WC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868245 SAMN25887175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-BUSWHCZPV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868246 SAMN25886436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BVV5M5ZA4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868247 SAMN25886210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BVZQJ4EBT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868248 SAMN25886689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-BXTXRZGKD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868250 SAMN25886971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BXZQH8AT7/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868251 SAMN25886939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DXFDFWKXR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868249 SAMN25887174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-BXXCMDGJV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868252 SAMN25886940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DWXPSUPA4/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868253 SAMN25886431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DY27RG6MY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868254 SAMN25886938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DYMVK2QCZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868255 SAMN25886686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DZEPPQJGM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868256 SAMN25887167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DYY92644P/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868257 SAMN25886330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-DZQW6XMN9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868258 SAMN25886937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DZSZZ6KSG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868259 SAMN25887166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-E2KWJRJMU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868260 SAMN25886685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-E342C6PBG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868261 SAMN25886430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E3BBZAFT4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868262 SAMN25886329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E4BXDSSDX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868263 SAMN25886936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-E4DPNH2TA/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868264 SAMN25886328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E5GUWP394/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868265 SAMN25887165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-E5U7EZG4D/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868266 SAMN25886203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-E5WHJZUCR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868267 SAMN25886935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-E8XVK7QXV/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868268 SAMN25886202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-E95QBSAG3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868269 SAMN25886429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-E9ASTDBHK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868270 SAMN25886201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-E9NGW6SHZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868271 SAMN25886428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EAGNSW3HF/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868272 SAMN25886427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EBKY6Y9Z8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868273 SAMN25887247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-EACNNDREE/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868274 SAMN25886200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EDRMDT4D5/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868275 SAMN25886934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EDU96K9VJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868276 SAMN25886933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EDZ7DD2DY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868277 SAMN25886366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-EE5PU356N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868278 SAMN25886199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EFKPADY3Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868279 SAMN25887246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-EFWFUSV4V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868280 SAMN25886932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EGXRFH83C/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868281 SAMN25886931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EJSS9P3GA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868282 SAMN25886930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EJXHGAE77/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868283 SAMN25886904 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HG8KNR9K9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868284 SAMN25886418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HH6BSKQ4A/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868285 SAMN25886542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HHF4UGW99/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868286 SAMN25886903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HHX2WBHE7/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868287 SAMN25886902 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HMZA7XAEC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868288 SAMN25886417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HNMN5NU2Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868289 SAMN25886416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HNR3XEAV2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868290 SAMN25886901 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HQPNKM5WC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868291 SAMN25886187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-HTV5EQRAP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868292 SAMN25886186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-HV8AAVTFT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868293 SAMN25886673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HVY8S9RDB/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868294 SAMN25887153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HW8AKJJ4E/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868295 SAMN25886900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HWRDKB78Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868296 SAMN25886899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HWX4K5D7T/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868297 SAMN25886898 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HXWX3FVN5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868298 SAMN25887241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HYE8TJ3MM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868299 SAMN25886414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HZ62TMBJX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868300 SAMN25886415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HYJDXB4FE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868301 SAMN25886672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-J28HYUCWF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868302 SAMN25886365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-J3NJWCCBQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868303 SAMN25886413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-J3ENSN5SN/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868304 SAMN25886541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J3RRH9BRE/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868305 SAMN25886897 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J4JPEVK57/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868306 SAMN25886896 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J4NAH2FA2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868307 SAMN25886540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J54ZGJ6D3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868308 SAMN25886317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J539SE9MJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868309 SAMN25886316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J5YK92Y5W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868310 SAMN25886671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-J5FMEZA53/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868311 SAMN25886670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-J647THWCY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868312 SAMN25886895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J6CZ694UG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868313 SAMN25886539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J6KBCMPGH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868314 SAMN25886412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-J72R9AYV5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868315 SAMN25887238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KTCEVU4D7/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868316 SAMN25886410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-KTK85G8TF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868317 SAMN25886597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-KVRW7N42W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868318 SAMN25887140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-KXU43Y5CQ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868319 SAMN25886870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M27NJA4EW/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868320 SAMN25886868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M3AVDQ3B5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868321 SAMN25886869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M2JQF8SCJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868322 SAMN25886459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-M55A4578B/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868323 SAMN25886180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-M55JT5P8D/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868324 SAMN25887237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-M5EBCNS6Y/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868325 SAMN25886867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M7F93JQ8Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868326 SAMN25886409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-M7VPENQSB/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868327 SAMN25886866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M8ZGBG8ZQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868328 SAMN25886865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MCUWD3WSA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868329 SAMN25886596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-MD944ZSX3/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868330 SAMN25886864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ME4NK5XNQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868331 SAMN25886664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MEAE3J4MV/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868332 SAMN25886312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MES3TN9AD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868333 SAMN25886863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MEUB8CBMZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868334 SAMN25886533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MGQFPTNGB/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868335 SAMN25886862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MHUM2WUGV/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868336 SAMN25886861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MK9NPZWZ6/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868337 SAMN25886532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MT7WX27M9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868338 SAMN25886860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MP86G6XXQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868339 SAMN25886859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MU5YKJ7RX/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868340 SAMN25886663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MUY5PBFTY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868341 SAMN25886662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MUZ7G3K92/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868342 SAMN25886179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-MWB8TXKT7/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868343 SAMN25886858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MXE84F3U7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868345 SAMN25886408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MZYMWFEWQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868346 SAMN25886857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N23HBZ5EH/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868347 SAMN25886839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PVQ479VJB/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868344 SAMN25886250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-MZXHMRMD3/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868348 SAMN25886840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PRK8XW78C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868349 SAMN25886838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PWVSQMPTV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868350 SAMN25886405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PXKYKBMPX/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868351 SAMN25886406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PXCYRPM5E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868352 SAMN25886470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PXPDJHYNQ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868353 SAMN25886302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-PYCG3MUAE/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868354 SAMN25886303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-PY6CF6F8V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868355 SAMN25886173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-PYGSZEJTR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868356 SAMN25886653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PZ6NTK7ZQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868357 SAMN25886837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q2DKEEATJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868358 SAMN25886836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q5R5ZBHFM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868359 SAMN25887236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-Q5W4NQJKY/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868360 SAMN25886835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q6D5229FR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868361 SAMN25887235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-Q6DHDNSHC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868362 SAMN25886528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Q7K6ZKR5Z/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868363 SAMN25886172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Q7WUD5DBK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868364 SAMN25887128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Q838QP6YW/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868365 SAMN25887127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Q9VJRS7YJ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868366 SAMN25886404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QB4W83DHX/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868367 SAMN25886652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QAGVB5TJ3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868368 SAMN25886301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QBH74D953/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868369 SAMN25886361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-QBFS58SZ2/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868370 SAMN25886834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QC6NJ22SR/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868371 SAMN25886833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QCJ38749Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868372 SAMN25886593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-QCSPBBFH8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868373 SAMN25886373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-QCSAQKW6F/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868374 SAMN25886171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QCW4XQE96/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868375 SAMN25886832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QD9DR7M26/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868376 SAMN25886527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QDEPEN4U3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868377 SAMN25886831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QDJ28USRC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868378 SAMN25886403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QEEN752GP/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868379 SAMN25886581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3BH4FPCRQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868380 SAMN25887220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3BYFHKW8F/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868381 SAMN25887070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3C4YTJC9E/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868382 SAMN25886479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-3CBWBM5AS/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868383 SAMN25887069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3CMY299KR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868384 SAMN25886455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3E3QATBHC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868385 SAMN25886580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3EXYS6RAR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868386 SAMN25886244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3F3UBD77Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868387 SAMN25887218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3FYD47EEN/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868388 SAMN25887068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3HHY3CQW6/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868389 SAMN25887067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3K88BEDZC/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868390 SAMN25887219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3EKUQ3DHX/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868391 SAMN25886243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3KJDYBG3F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868392 SAMN25887217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3PFZEUXS6/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868393 SAMN25886242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3KN6KWTEM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868394 SAMN25886722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-3PJK3FKCG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868395 SAMN25886354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3PJTC7YQC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868396 SAMN25887216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3Q3KXSJDJ/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868397 SAMN25887215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3Q4N6CZEM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868398 SAMN25887066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3Q5FE29R6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868399 SAMN25886241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3QDZSSCRY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868400 SAMN25886579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-3RJJU75NZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868401 SAMN25887065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3S4E86S7N/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868402 SAMN25886133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VT-CDC-STM-3S9X5SWY6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Vermont host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868403 SAMN25886240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3SCGPPMK3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868404 SAMN25887064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3SPKVDPCJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868405 SAMN25887063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3T5ES3DWB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 26 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868406 SAMN25886239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3SQMAVY86/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868407 SAMN25887214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3UTMKKD75/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868408 SAMN25886454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3W6RZMG3D/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868409 SAMN25886353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3W8N4RCXJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868410 SAMN25887255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-3WE7N2HC3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868411 SAMN25886609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-3XZE6FAXK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868412 SAMN25886608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-3YNGQQZVE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868413 SAMN25886578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-444RG6WEV/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868414 SAMN25887254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-43ECV47DC/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868415 SAMN25887213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-45TH65JN5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868416 SAMN25886721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-45SS2RBKQ/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868417 SAMN25886577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-47WQ476YA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868418 SAMN25887061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-49WQ5F3X2/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868419 SAMN25887062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-49WKF2KU9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868420 SAMN25886720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4AMD7Z65V/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868421 SAMN25887212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-4ASSW3UBP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868422 SAMN25886719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4DT92RB62/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868423 SAMN25886607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-4E788RYQH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868424 SAMN25887060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4GH9CAA59/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868425 SAMN25887059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4GNC99P9C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868426 SAMN25887058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4GPNSK9BX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868427 SAMN25887057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4JJVJXRG7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868428 SAMN25887211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-4JW5MBQXU/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868429 SAMN25887056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4KY4PRXZE/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868430 SAMN25886453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-4PNU4TQAV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868431 SAMN25886576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-4U38AMZTK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868432 SAMN25886478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4UWCRCCBW/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868433 SAMN25886238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4UY5SU6CJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868434 SAMN25886718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4VNCNQKFT/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868435 SAMN25887055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4VS9R84XS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868436 SAMN25887054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4WHSHMUJH/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868437 SAMN25886237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4Y2CK78RH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868438 SAMN25887053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4Z9Z8PJ55/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868439 SAMN25887052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-563H3XVYB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868440 SAMN25886575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5686AD4KJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868441 SAMN25887210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-56EC3SAF9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868442 SAMN25886497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-58Y7N34G5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868443 SAMN25887194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-7J7776H4A/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868444 SAMN25886474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7KWYN6FR4/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868445 SAMN25886344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7NGTEMHP3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868446 SAMN25886447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7PAVPC6BE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868447 SAMN25886705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-7Q9W84XGU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868448 SAMN25887023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7QCHJR4CH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868449 SAMN25886446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7QWKNF5DN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868450 SAMN25886704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-7SPYXURNU/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868451 SAMN25887022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7T9QYQB8R/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868452 SAMN25886703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-7TBTHUZZY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868453 SAMN25887021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7TN5N7TYX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868454 SAMN25887020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7Y2K23YA6/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868455 SAMN25887019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7Z52BE36V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868456 SAMN25887018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7ZH4ZWDTZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868457 SAMN25887193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8247FBZV9/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868458 SAMN25886702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-82ADVHZWH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868459 SAMN25886570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-82AKG6WGN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868460 SAMN25886701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-82U4B37FP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868461 SAMN25886569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-84QABWTDC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868462 SAMN25887017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-864K3H76A/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868463 SAMN25887192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-865DRDMCE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868464 SAMN25886460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-87ESWGA8B/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868465 SAMN25886223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-887MWZNKE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868466 SAMN25886700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-889WJTKX7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868467 SAMN25886496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-89YC7URRA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868468 SAMN25887016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8D9X7ZZAT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868469 SAMN25886699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8CBZ7KJ6E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868470 SAMN25887191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8EGA5YW7R/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868471 SAMN25887014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8GH8KTMF8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868472 SAMN25887015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8G49XY8K9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868473 SAMN25887013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8GSGYXTBT/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868474 SAMN25886222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-8HQAQKKUB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868475 SAMN25886568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8J3MXRRT7/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868476 SAMN25887012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8K28RB3AZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868477 SAMN25887190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8KZ8UVK6J/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868478 SAMN25886343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8NA5UBTM2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868479 SAMN25886567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8R566XFGH/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868480 SAMN25886566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8R82SP3GV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868481 SAMN25887011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8SGY6A37F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868482 SAMN25887010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8SQRGHVTJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868483 SAMN25886495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-8T44W2AJR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 17 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868484 SAMN25887009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8TMNH7XXR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868485 SAMN25886698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8UF5SBTDE/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868486 SAMN25887008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8UQDJ4BQK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868487 SAMN25887007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8V42CKWU3/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868488 SAMN25887006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8VKN99ADF/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868489 SAMN25887005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8WD9NJGCV/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868490 SAMN25886565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8WZ75Y9K5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868491 SAMN25887004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8XWYCSV3U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868492 SAMN25886445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-8YNJV5R5F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868493 SAMN25886604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-9254K9ARN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868494 SAMN25887253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-92MBSSCMH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868495 SAMN25886501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-944PR435W/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868496 SAMN25887003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-94BZBB4ZK/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868497 SAMN25887189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-94T4WSMER/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868498 SAMN25887002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-95C58WE95/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868499 SAMN25886697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-969JM5UNQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868500 SAMN25887000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-99AYEKP3D/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868501 SAMN25886999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9AF265EAC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868502 SAMN25887001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-96JA6JYMQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868503 SAMN25886919 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G7RQSHVV3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868504 SAMN25886918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G86JNNMMZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868505 SAMN25886917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G89955XDN/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868506 SAMN25887159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-G9ECPPJ2V/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868507 SAMN25886546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-G9YCUUV8B/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868508 SAMN25886677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-GDKUUCJXG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868509 SAMN25886676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-GE5ZPTET9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868510 SAMN25886193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GEW9XNXMN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868511 SAMN25886916 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GF7YH3U7J/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868512 SAMN25886915 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GFFEEVQ97/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868513 SAMN25886423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GH5ZC25DD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868514 SAMN25887242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-GH9KGH73N/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868515 SAMN25886914 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GHPASWUUH/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868516 SAMN25886913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GJATJHX2Y/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868517 SAMN25887158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-GKTD5MW37/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868518 SAMN25886376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-GN7F236ST/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868519 SAMN25887157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-GNN93YQM8/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868520 SAMN25886422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GP568WY75/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868521 SAMN25887156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-GQ2585JUF/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868522 SAMN25886545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-GSWN6Z7PX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868523 SAMN25887136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NTZWKMBJ6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868524 SAMN25886531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NUTJCD3UJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868525 SAMN25886594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-NUBZTCPPB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868526 SAMN25886487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-NV82Y5ANY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868527 SAMN25886305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NW7VWZDF3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868528 SAMN25887135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NX9A9T3MV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868529 SAMN25886658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NWBPYGM99/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868530 SAMN25887082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-NY63C9C9E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868531 SAMN25886846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NYRWXF2WH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868532 SAMN25887134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NZF2YBE5C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868533 SAMN25887133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NZRGEM6PY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868534 SAMN25886249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-NZSK2PMZ5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868535 SAMN25886845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P2CCVQRKB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868537 SAMN25886844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P3VBHZ8UQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868538 SAMN25886530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-P3WPVDQZE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868539 SAMN25886657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-P5T95AAGQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868536 SAMN25886175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-P35TST3GP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868540 SAMN25886304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-P7NGV58RE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868541 SAMN25887132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-P8257X2UJ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868542 SAMN25886656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-P8GAQS23Y/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868543 SAMN25886655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-P8ZNSB7XC/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868544 SAMN25886407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-P9QTGZDZ6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868545 SAMN25886654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-P9JJMAAKR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868546 SAMN25887131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-PA6B7R7HK/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868547 SAMN25886843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PC7AZMT5G/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868548 SAMN25887130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-PCRSFXNJR/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868549 SAMN25886842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PCHRWAAVN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868550 SAMN25886174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-PCSBA5RX2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868551 SAMN25886529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PD9ANAEEE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868552 SAMN25886841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PJKNPCHRE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868553 SAMN25886362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-PPRST8FVT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868554 SAMN25887129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-PQFVM4Y5B/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868555 SAMN25887234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-S5DHKSGFZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868556 SAMN25886811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S5PNA8V2T/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868557 SAMN25886810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S6PH2JDKJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868558 SAMN25886643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-S6RVHZHE7/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868559 SAMN25886521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-S7Q5QVNPJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868560 SAMN25886164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-S88QVXKX5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868561 SAMN25886809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S972B8CSG/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868562 SAMN25886484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-SAFK2XXGE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868563 SAMN25886807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SC6YHXABA/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868564 SAMN25886808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SC36A68VF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868565 SAMN25887079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-SCHPFV4VH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868566 SAMN25886520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SCSA85MDM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868567 SAMN25886519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SD9VT3UXA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868568 SAMN25886518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-SEYN4T25P/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868569 SAMN25887120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SGBAXN4EB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868570 SAMN25886400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SJG2TQUKC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868571 SAMN25886806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SKB6YZNWQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868572 SAMN25886805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SKW3FA2Q6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868573 SAMN25887081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DC-CDC-STM-SM24R7PXC/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868574 SAMN25887119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SN2HEBRMW/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868575 SAMN25887118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SNHEY4BRQ/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868576 SAMN25886163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-SQ6Y65EM6/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868577 SAMN25886804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SRZBCKKMY/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868578 SAMN25886399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SQH2SC29X/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868579 SAMN25886642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-STDJDPVMH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868580 SAMN25886803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SU4Y28AR3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868581 SAMN25886802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SUC6Y7ES7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868582 SAMN25886591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-SUJWD7WSQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868583 SAMN25886289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SVMJ346U5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868584 SAMN25887233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-SYV8DA6AQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868585 SAMN25886801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SZWMHWMBV/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868586 SAMN25886590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-SZEZ296VK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868587 SAMN25886280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VCY5KJ85D/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868588 SAMN25886775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VDWMPZA72/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868589 SAMN25886503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KS-CDC-STM-VEVBC7DV6/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868590 SAMN25886511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VEBW6R65W/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868591 SAMN25886774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VEVEYYKDR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868592 SAMN25886773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VG2BPZWD5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868593 SAMN25886392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VG42FFFX5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868594 SAMN25886772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VKSMD5K7W/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868595 SAMN25886771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VMEKKH5RU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868596 SAMN25886769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VPMUUFVF9/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868597 SAMN25886770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VMKXQYNE8/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868598 SAMN25886768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VQ47F6PYQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868599 SAMN25886767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VRJC9563W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868600 SAMN25886766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VS85WYY9Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868601 SAMN25886765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VSF4NHSRC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868602 SAMN25886391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VSQZSQ4ES/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868603 SAMN25886633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VU5JEGVFC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868604 SAMN25886390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VZBA3Y76C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868605 SAMN25886149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VX23AQS4C/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868606 SAMN25887101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-W4NRQ3WR6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868607 SAMN25886632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-W2SHSHD3B/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868608 SAMN25887229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-W4TQ4M9QW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868609 SAMN25886148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-W8HMGXZYY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868610 SAMN25886631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-W74Y5HXWZ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868611 SAMN25887100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WA4MBZ868/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868612 SAMN25886510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WAW2NWT7Q/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868613 SAMN25886764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WDBDPRPJA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868614 SAMN25887099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WDGAHGU6M/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868615 SAMN25886279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WBMPFBS9Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868616 SAMN25886509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WDREK59VA/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868617 SAMN25886763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WF62SR8KH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868618 SAMN25886508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WFZMXTGET/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868619 SAMN25886612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZRW6VXPN3/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868620 SAMN25886728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZSGVD5JAM/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868621 SAMN25886727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZTKJTE75R/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868622 SAMN25886463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZWEJE6EFQ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868623 SAMN25886381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZX3X4ZXFC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868624 SAMN25886726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZZGTGS7ZA/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868625 SAMN25886257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZZJQ3PGUP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868626 SAMN25886256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZZJWDV724/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868627 SAMN25886586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-224ABSZKD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868628 SAMN25887224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-22K4EKHKH/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868629 SAMN25887078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-22MBF6NVT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868630 SAMN25886499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-25N9A2SYS/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868631 SAMN25886714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5UYWNQU3E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868632 SAMN25886349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5VCDFD4N4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868633 SAMN25886458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/ME-CDC-STM-5VF8U99T8/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868634 SAMN25886232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5WGBPH6NS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868635 SAMN25886713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5X2X5DN9H/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868636 SAMN25886461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-5WS9VPKHU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868637 SAMN25887041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5XMX2KJBQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868638 SAMN25886606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-5XT5PRG9U/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868639 SAMN25886712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5Y278MPTR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868640 SAMN25886611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IA-CDC-STM-5Z782FY8W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868641 SAMN25887040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5ZDCRPJZF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868642 SAMN25887039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-62T84PNQW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868643 SAMN25887038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-63V4E8NDD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868644 SAMN25886450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-64WADES4A/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868645 SAMN25887037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-65FJ6TYXE/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868646 SAMN25887036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-66K2JY7YN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868647 SAMN25887035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-679S9AHNZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868648 SAMN25886254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-68ZBY6T6Y/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868649 SAMN25887034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-68KUBKVFV/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868650 SAMN25886711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6993UX74T/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868651 SAMN25887033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6A5PN2MA2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868652 SAMN25887032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6C3BSS2FT/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868653 SAMN25887202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6CDPUKG9V/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868654 SAMN25886348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6CNE7JFES/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868655 SAMN25886449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6CR7FJYP5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868656 SAMN25886448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6DE58W4ZB/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868657 SAMN25886710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6EGY5N6GC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868658 SAMN25886477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-6FMRCVCA2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868659 SAMN25887031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6GZS3MYNQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868660 SAMN25887201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6H5G8M2RF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868661 SAMN25886231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6JRWEE7B6/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868662 SAMN25886709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6MVB2VUV4/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868663 SAMN25886442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9EX5S6Z2Q/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868664 SAMN25886441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9FQ6AD575/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868665 SAMN25886998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9G7FV7RC3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868666 SAMN25886563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9GFS979WT/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868667 SAMN25886696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-9HVMPPF2C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868668 SAMN25886221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9HZ5AAXJS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868669 SAMN25886997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9J79EP7EU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868670 SAMN25886603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-9KFT5B9FF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868671 SAMN25886342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9KMQK4ZQG/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868672 SAMN25886996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9MXMDXXVD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868673 SAMN25886341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9NPJG6SAZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868674 SAMN25886340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9PVQQRPHJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868675 SAMN25886995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9PHYBQDCV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868676 SAMN25887187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-9QJNAJ4FZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868677 SAMN25886494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-9RJGST9HF/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868678 SAMN25886493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-9SYDRTRQU/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868679 SAMN25886562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9TVUPNPNX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868680 SAMN25886695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-9TR43MX8T/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868681 SAMN25886220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-9X2HU6YEU/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868682 SAMN25886994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9WETHM94W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868683 SAMN25886602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-9X8NCZEV5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868684 SAMN25886339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9XR5ZP698/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868685 SAMN25886338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9ZA3SUPER/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868686 SAMN25886440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A387A7RCJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868687 SAMN25886439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A39DZ93VQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868688 SAMN25886219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-A3BA8UBBB/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868689 SAMN25886218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-A3NFMMQG2/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868690 SAMN25886993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A4ACTM6D9/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868691 SAMN25886337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A7MFDM4KF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868692 SAMN25886991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A8F8W8TQW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868693 SAMN25886992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A7VGCYB3D/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868694 SAMN25886970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C237BJPB5/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868695 SAMN25886333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-C24PSC3T7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868696 SAMN25886969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C27PD8NB7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868697 SAMN25886379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-A8VSNXDMJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868698 SAMN25886688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-C4AYDBZT2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868699 SAMN25886492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-C4MM47X69/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868700 SAMN25886687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-C4NKNSGHZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868701 SAMN25886209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-C6KS5W4Z3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868702 SAMN25886968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C6JYC5ECZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868703 SAMN25887173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-C6KTEAJUR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868704 SAMN25886967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C75SS4772/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868705 SAMN25886966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C7RS5DYDM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868706 SAMN25886208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-C7UY8AQPV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868707 SAMN25886332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-C84KBHXA4/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868708 SAMN25886964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CAT2WS8E3/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868709 SAMN25886965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CA877A3KZ/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868710 SAMN25886963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CB239NZJZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868711 SAMN25886962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CB4MGTQT5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868712 SAMN25886961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CBR988ZCX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868713 SAMN25887249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-CCDF6SAZJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868714 SAMN25886959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CEMC5PTV8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868715 SAMN25886960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CD3JGFHQC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868716 SAMN25887261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-CEY466GWT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868717 SAMN25886958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CG23XENNG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868718 SAMN25886957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CHPK7HQBK/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868719 SAMN25886956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CHRGFMPUU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868720 SAMN25886955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CHY3AN7VD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868721 SAMN25886207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CJVTJNXMT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868722 SAMN25886954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CK969UN4U/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868723 SAMN25887172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CMNCZNUNQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868724 SAMN25886953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CRAWNYKU2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868725 SAMN25886331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CN3PEF34S/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868726 SAMN25886952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CRCY6Y9GS/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868727 SAMN25886951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CREDRMAJG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868728 SAMN25886435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-CVSNBV4DK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868729 SAMN25886950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CWCCPHBXR/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868730 SAMN25887171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CUMJB3SUV/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868731 SAMN25886491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-CWDU426K3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868732 SAMN25886557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CXGMH9GDZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868733 SAMN25886949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-D27RRQT4Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868734 SAMN25887248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-D3TVVU9KG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868735 SAMN25886434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-D447W7NWV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868736 SAMN25886556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-D5JKK9FQC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868737 SAMN25886374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NE-CDC-STM-D4K3KWQNQ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868738 SAMN25886206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-D9HHEJP32/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868739 SAMN25886433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DBKHG22TU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868740 SAMN25886948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DD4TZRHR7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868741 SAMN25886205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DC52H3XPZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868742 SAMN25886555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DEAWKC93K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868743 SAMN25886947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DEKKFEVU2/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868744 SAMN25886554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DEQ3VU65B/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868745 SAMN25886946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DH3G6DS9N/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868746 SAMN25887170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DFYREZWBZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868747 SAMN25886204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DHVPCNFED/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868748 SAMN25886945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DN9QBGHCZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868749 SAMN25886944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DSXFJCZST/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868750 SAMN25886367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-DNKFHJB7E/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868751 SAMN25886553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DTCKPYF8Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868752 SAMN25886432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-DT3RSJXQM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868753 SAMN25887169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DTSJV4C96/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868754 SAMN25886552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DTD9RPV4J/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868755 SAMN25887168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DU5SNQR88/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868756 SAMN25886943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DVMD8Z6BF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868757 SAMN25886942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DW4DJCTY6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868758 SAMN25886941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DWXJSY45N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868759 SAMN25886882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JX5YUWHBV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868760 SAMN25886184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-JZA22WU89/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868761 SAMN25886536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JYRNUQRVK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868762 SAMN25886880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JZXJ4EZ29/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868763 SAMN25886881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JZVENXGJ3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868764 SAMN25886534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-K2EVE9SEV/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868765 SAMN25886535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-K22NW5N6W/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868766 SAMN25887080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-K2VBUPNM2/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868767 SAMN25887143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-K3UEC75VJ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868768 SAMN25887240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-K377WVC7H/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868769 SAMN25887142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-K4A2VJDSB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868770 SAMN25886879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K4XBNWJHY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868771 SAMN25886878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K68KZGGC2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868772 SAMN25886877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K7AZV7N4B/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868773 SAMN25886363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-K8E8AKXT3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868774 SAMN25886183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KBAA8DBER/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868775 SAMN25886876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KCR726BCS/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868776 SAMN25887239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-KCUYF6Z4X/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868777 SAMN25886667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KECPWZXY4/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868778 SAMN25886182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KFS4PAA48/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868779 SAMN25887141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-KFWYZZ4M8/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868780 SAMN25886875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KG6QPF8SN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868781 SAMN25886666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KJRJW3VYW/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868782 SAMN25886874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KKUNAEYGH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868783 SAMN25886488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-KMEGXNHZN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868784 SAMN25886314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KP64HJNVS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868785 SAMN25886873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KPJTP4C7Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868786 SAMN25886313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-KQPEHVU8Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868787 SAMN25886872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KR4T6Z6ME/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868788 SAMN25886181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KRPHA7ENQ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868789 SAMN25886871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KSPFGC9NW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868790 SAMN25886665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KRYT4FG28/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868791 SAMN25886856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N2CS4JZAE/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868792 SAMN25886855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N2PHE6UAD/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 98 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868793 SAMN25886311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-N56G3HGAT/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868794 SAMN25886854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N845JXKFC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868795 SAMN25886178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-N89SB8PPH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 19 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868796 SAMN25886853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N8CHKHAUY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868797 SAMN25886378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-N97JG94C9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868798 SAMN25887139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-N8SESXK5U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868799 SAMN25886310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-N98GFX8FR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868800 SAMN25886377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-N9BZCNMKT/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868801 SAMN25886852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NAAH2V2AK/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868802 SAMN25887138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NAVJ8YPAY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868803 SAMN25886595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-NB696HJD8/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868804 SAMN25886661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NB4CPEWRY/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868805 SAMN25886177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NDRBJ4TPD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868806 SAMN25886851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NBW4EBZGS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868807 SAMN25886850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NDRT4E7BD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868808 SAMN25886660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NDX2T739H/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868809 SAMN25886364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-NFDRXKQ4G/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868810 SAMN25886471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NGXA9A223/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868811 SAMN25886659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NHTGB3MBF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868812 SAMN25886849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NJY8GPMMK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868813 SAMN25886309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NMG6EPTAZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868814 SAMN25886307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NPKQUP58D/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868815 SAMN25886848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NKY6YCYWH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868816 SAMN25886308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NP9XPFC5U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868817 SAMN25886176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NQVAXX3X9/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868818 SAMN25886847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NR9NZSGX6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868819 SAMN25887137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-NSBQKYX5B/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868820 SAMN25886358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-NSEFJX8M3/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868821 SAMN25886130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-NTQPNSUR2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868822 SAMN25887105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UKGXFAR3G/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868823 SAMN25886306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NTV6VW6FX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868824 SAMN25886248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-UJFX8UK4M/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868825 SAMN25886515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UMDW2FF2A/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868826 SAMN25886637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UKH2NC8NJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868827 SAMN25887104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UNYAZTMKV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868828 SAMN25887103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UPPADDP6U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868829 SAMN25886395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UQJ48ZNWJ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868830 SAMN25886154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UR8SR4TFV/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868831 SAMN25887231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-US52YW52Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868832 SAMN25886780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UVPEDT9VH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868833 SAMN25886781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-USPNBS72G/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868834 SAMN25886282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-UVVGKZQFM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868835 SAMN25886153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UW3B2YPMY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868836 SAMN25886514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-UW92YXWHQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868837 SAMN25886467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-UWZ6ZS6PQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868838 SAMN25886152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V27KAFN2W/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868839 SAMN25886635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UZZ7F3BRT/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868840 SAMN25886636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UZSVP8J4D/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868841 SAMN25886779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V2XT4ZA92/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868842 SAMN25886778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V339KVKQ5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868843 SAMN25886777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V6RUPGVGC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868844 SAMN25886281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V6YUNJUX8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 46 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868845 SAMN25887102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-V7PCEBUZK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868846 SAMN25886776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V83AZENBZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868847 SAMN25886634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VA9JRR9KX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868848 SAMN25886394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V8ENJW34W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868849 SAMN25886151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VA9R97GHQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868850 SAMN25886513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VCTURBDTF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868851 SAMN25886393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VCKKJ7N3N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868852 SAMN25886150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VCPBFUG22/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868853 SAMN25887230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-VCQ3BSJ9J/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868854 SAMN25886512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VCXR7KPN8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868855 SAMN25887225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-YYEWP3PDH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868856 SAMN25886738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Z4DCHN5YN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868857 SAMN25886739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YZ5XRSJHN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868858 SAMN25886263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Z4GG2Y84K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868859 SAMN25886740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YZ45CN5CZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868860 SAMN25886136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Z574XKF8J/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868861 SAMN25886737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Z5DXMYECF/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868862 SAMN25886383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Z5PMN2MTQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868863 SAMN25886262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Z5PB5VSJS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868864 SAMN25886261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Z9T4JGJKR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868865 SAMN25886504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-ZA4KYCC52/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868866 SAMN25886260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZBRQJXJN2/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868867 SAMN25886466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZCF6PYNQN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868868 SAMN25886735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZCKBPP76Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868869 SAMN25886736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZCAFF44YJ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868870 SAMN25886465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZD4M994HS/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868871 SAMN25886135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ZDBSTFRGP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868872 SAMN25886259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZGXMUMYAB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868873 SAMN25886734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZHPZ7YGXK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868874 SAMN25886733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZJ9BCAJJX/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868875 SAMN25886480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-ZHQJSQSVU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868876 SAMN25886614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZHRRXDESH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868877 SAMN25886731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZJUMCAYQG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868878 SAMN25886732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZJPQDKH3F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868879 SAMN25886382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZKY5MNAYM/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868880 SAMN25886464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZMMYNPUUA/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868881 SAMN25886258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZMU4U6X35/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868882 SAMN25887084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZKZHW6PR2/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868883 SAMN25886730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZQMPWQB62/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868884 SAMN25886729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZQRR4PVW9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868885 SAMN25886613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZRDKF4JEH/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868886 SAMN25886162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-T29746KG6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868887 SAMN25887083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZRNCPTS3R/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868888 SAMN25887232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-T35K7RSAE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868889 SAMN25886161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-T3AFUESEV/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868890 SAMN25886398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-T4WGM7JDR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868891 SAMN25886253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-T62FQG5GD/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868892 SAMN25886160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-T5PFSK4NC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868893 SAMN25887117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-T7MR3BNPF/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868894 SAMN25886641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-TAK3UB3KQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868895 SAMN25886360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-T95S6WARY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868896 SAMN25887116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TAVWEMM67/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868897 SAMN25886800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TB49TKBK4/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868898 SAMN25886799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TBX5R5C4D/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868899 SAMN25886517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-TBS8DM2DP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868900 SAMN25886798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TF96Q7HSC/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868901 SAMN25886468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-TEY8TCBK7/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868902 SAMN25886796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TH39DE9F4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868903 SAMN25886640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-TGCHZQANZ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868904 SAMN25886797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TFCKP76RC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868905 SAMN25886795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-THB6UNDWG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868906 SAMN25886589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-TJP5P6QV6/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868907 SAMN25886794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-THRDTUBNU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868908 SAMN25887115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TKRZA5KYY/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868909 SAMN25886792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TKCTXU6Q5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868910 SAMN25886793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TJY6824HF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868911 SAMN25886288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TM3TG5H97/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868912 SAMN25886791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TRRKMGNF8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868913 SAMN25886588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-TND25ZPN6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868914 SAMN25887114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TSA2H9XZJ/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race American Indian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868915 SAMN25886287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TSZY5YKGB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868916 SAMN25886286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TVPP46YKX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868917 SAMN25887113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TVQHDNWUZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868918 SAMN25886285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TW4DWWB7P/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868919 SAMN25886274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-X9YVKDRKN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868921 SAMN25886145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XAD24YFHH/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868922 SAMN25886144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XC3JMYNHG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868923 SAMN25886751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XDQS4MM6K/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868920 SAMN25886630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XA42TDQEA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868924 SAMN25886629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XC79RYVWP/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868925 SAMN25887226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-XDQPPQSNF/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868926 SAMN25886273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XGKSMXTFF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868927 SAMN25886628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XH6DM75D6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868928 SAMN25886750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XHWBUS9V6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868929 SAMN25886272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XKWQGKAZ6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868930 SAMN25886627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XJZZ6V5VD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868931 SAMN25886271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XMJZ99CZV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868932 SAMN25886270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XP3G9F2R3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868933 SAMN25886749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XM3JXSP3F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868934 SAMN25886748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XPS6NH6UT/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868935 SAMN25886481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-XQHVTBPU9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868936 SAMN25886747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XQ8UEM5U2/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868937 SAMN25886269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XRKDXTAQF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868938 SAMN25886626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XRD9CCUWW/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868939 SAMN25886267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XSRY5SSQZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868940 SAMN25886625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XRRTJE48N/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868941 SAMN25886268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XSMKPTTNJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868942 SAMN25886624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XTUH2MB9V/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868943 SAMN25886266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XV3RDSCYV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868944 SAMN25886622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XWWYYP6B9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868945 SAMN25886587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-XX5PZF2DJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868946 SAMN25886623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XW8AY8EZY/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868947 SAMN25886143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XPJ2WJYCS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868948 SAMN25886746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XYFGTX4PP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868949 SAMN25886745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XZ2V9UGMC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868950 SAMN25887091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y266V5EPX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868951 SAMN25886247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-2635PRKJB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868952 SAMN25886725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-26WFMRZN9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868953 SAMN25886724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-28788FY64/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868954 SAMN25886357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-27RC6QUJ9/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868955 SAMN25886457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-29HJYNXYV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868956 SAMN25886246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-29J7FCK4H/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868957 SAMN25887077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2A3XSKR95/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868958 SAMN25886380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-2ABWN3UGQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868959 SAMN25886585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2ANW8P4KC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868960 SAMN25886356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2BWYEC2DE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868961 SAMN25886584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2BZHME58P/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868962 SAMN25887076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2C7G32UEX/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868963 SAMN25886444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9AUFY3M6K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868964 SAMN25886443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9CQPR6C8Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868965 SAMN25887188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-9D2H4YT63/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868966 SAMN25886564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9DMCXYBK8/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868967 SAMN25886684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EMXFPPSMH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868968 SAMN25886426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ESCMEFQY3/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868969 SAMN25886327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-EQR2T3QH5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868970 SAMN25886198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EU6MN5YFY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868971 SAMN25886683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EUP6JUUV2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868972 SAMN25886326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-EWBFWA6QP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868973 SAMN25886682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EXPU67EBG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868974 SAMN25887164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-EV9STEA43/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868975 SAMN25887245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-EYRN29ZXY/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868976 SAMN25886600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-F3QJS6JNY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868977 SAMN25886490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-F55H7PZ6Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868978 SAMN25886928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F9GZ9AWJR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868979 SAMN25886929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F9CNCGJUG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868980 SAMN25886425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-F64BZMGBV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868981 SAMN25886197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-F6ARNUACU/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868982 SAMN25886927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FASE783SP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868983 SAMN25886424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-FAW6429PF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868984 SAMN25886196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-F9ZUCDC2Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868985 SAMN25886926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FD8CZK3MR/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868986 SAMN25886551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FEE6BKXUT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868987 SAMN25886925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FE68C35Y6/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868988 SAMN25886681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FDQ2FK5DB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868989 SAMN25887244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-FG2HMEHGW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868990 SAMN25886550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FF8KRDJ75/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868991 SAMN25887163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FEGRHNWZA/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868992 SAMN25887243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-FGVTYBGYR/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868993 SAMN25886924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FHSDWA6ZK/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868994 SAMN25886325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FJ2BURAJ3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868995 SAMN25886599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-FN2DNXAU6/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868996 SAMN25886195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FJHY3XV9S/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868997 SAMN25887162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FN98NDT3J/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868998 SAMN25886923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FN9GPWPHV/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12868999 SAMN25886675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-GTSWRKAQF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869000 SAMN25886544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-GTXN3HR5V/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869001 SAMN25886324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GUSZDZJZ9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869002 SAMN25886912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GVNCFGFTC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869003 SAMN25886192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GWNN2H8BF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869004 SAMN25886191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GWVXVXD6Q/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869005 SAMN25886674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-GWYB75MDF/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869006 SAMN25886911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GXD8TUHNJ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869007 SAMN25886421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GYQ6FVMEB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869008 SAMN25886910 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GY5QRGYX3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869009 SAMN25886323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GYWY3TP9D/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869010 SAMN25886909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GZVGE7SGR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869011 SAMN25886252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-GZ9E6CBUD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869012 SAMN25886908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H2CC6B5B3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869013 SAMN25886907 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H3TNKR35K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869014 SAMN25886420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-H38KBRGAA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869015 SAMN25886322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H4QH98KGS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869016 SAMN25886190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-H65KSV7SZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869017 SAMN25887155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-H5TQT3ZR9/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869018 SAMN25886598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-H7W96EWZ5/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869019 SAMN25886189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-H7ZXFCZC7/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869020 SAMN25887154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-H8DP3GQPX/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869021 SAMN25886370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-H8Z65VU37/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869022 SAMN25886906 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H9BUPKYN3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869023 SAMN25886321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HA8U5QBZH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869024 SAMN25886543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HAP9D68NA/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869025 SAMN25886320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HE4TFCCJB/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869026 SAMN25886319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HEFBU5Y2S/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869027 SAMN25886905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HF554NMY9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869028 SAMN25886188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-HF5SG7VME/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869029 SAMN25886419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-HES69PSBS/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869030 SAMN25886318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HFM8P8URB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869031 SAMN25886894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J737N7WVC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869032 SAMN25886489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-J74KESGW8/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869033 SAMN25887151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JAXMAV823/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869034 SAMN25886669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JD2A4HEQV/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869035 SAMN25886893 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JAZQAJ49W/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869036 SAMN25887152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JAB4B44NU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869037 SAMN25886892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JD35GQJZ6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869038 SAMN25887150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JDNVV7UQ9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869039 SAMN25887148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JFEM3GRK9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869040 SAMN25887149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JEZUXSNDY/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869041 SAMN25886891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JFHRGW6SK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869042 SAMN25887260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-JGSPER6ER/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869043 SAMN25886538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JHSGRR2H5/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869044 SAMN25886890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JFVEZGX5X/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869045 SAMN25886315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JGXCZJZP6/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869046 SAMN25886889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JHW5H9ZET/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869047 SAMN25886888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JJDWYJHRD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869048 SAMN25886887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JKX43VGBV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869049 SAMN25887147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JNS9UWGZD/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869050 SAMN25886251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-JP69XGHCZ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869051 SAMN25887146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JPAKEYQSN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869052 SAMN25886411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-JPMY2BH5D/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869053 SAMN25887145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JRMC7TE7X/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869054 SAMN25887144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JRSSGRVU6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869055 SAMN25886537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JS9ZCQZ78/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869056 SAMN25886185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-JSBUZEFC7/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869057 SAMN25886886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JSG6JA68Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869058 SAMN25886885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JSQ55W2FH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869059 SAMN25886884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JUC4U6XC8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869060 SAMN25886883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JUESPQ3RQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869061 SAMN25886668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JUTKXAP34/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869062 SAMN25886472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-JWXFW36ME/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869063 SAMN25886300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QESEXARMG/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869064 SAMN25886830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QETH2WENU/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869065 SAMN25886299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QHEZHZ47S/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869066 SAMN25886526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QJCZT9B5N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869067 SAMN25886651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QJEB8WFGF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869068 SAMN25886829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QJWJWEKYX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869069 SAMN25886402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QM8R65B6C/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869070 SAMN25886525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QKJUF3RGY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869071 SAMN25886650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QMERXQPXN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869072 SAMN25886828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QMACGAUM3/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869073 SAMN25886827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QNYP28ANX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869074 SAMN25886170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QMJ3CX4D8/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869075 SAMN25886826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QP6R69F88/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Native Hawaiian or Other Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869076 SAMN25886825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QQH5XC3MR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869077 SAMN25887126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-QQWKBF7AN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869078 SAMN25886169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QRGYR9H3V/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869079 SAMN25886298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QR2EYQ4Y5/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869080 SAMN25886168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QTJ87WXAV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869081 SAMN25886167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-QTVM8MCBU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869082 SAMN25886132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-QV82387P5/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869083 SAMN25887125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-QVUA5YQRE/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869084 SAMN25886297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QY22897GD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869085 SAMN25886524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QY8HEH7VC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869086 SAMN25886296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QYAXRZE3Q/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869087 SAMN25886649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QZHDPSGC4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869088 SAMN25886166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-R3QHRD355/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869089 SAMN25886824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-R3ZBU2DDY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869090 SAMN25886295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R3W3BVD9P/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869091 SAMN25886294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R4GBU9V4N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869092 SAMN25887124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-R4H84S2NW/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869093 SAMN25886823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-R4UGM9BTM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869094 SAMN25886293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R5ZQ8B5G5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869095 SAMN25886401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-R82PRCVYA/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869096 SAMN25886592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-R9PZ4H65Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869097 SAMN25887123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RANPDMCGM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869098 SAMN25886486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-RCJTCUPTX/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869099 SAMN25886469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-REXHQKXMJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869100 SAMN25886822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RFG2FFQUE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869101 SAMN25886821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RH8T52H4E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869102 SAMN25886648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RJUA3B666/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869103 SAMN25886820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RMSE2NJWU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869104 SAMN25887122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RMWYRWCBK/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869105 SAMN25886485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-RP7V7EN4Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869106 SAMN25886819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RPRHEEF8R/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869107 SAMN25886523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RQW8BQY7E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869108 SAMN25887121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RQZN2Q6E9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869109 SAMN25886292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RQZXBQKEH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869110 SAMN25886818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RSTUNVBCJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869111 SAMN25886522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RT25E8SCK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869112 SAMN25887259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-RTA8W2FQ5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869113 SAMN25886817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RTASTHANN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869114 SAMN25886816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RUUFQAF2M/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869115 SAMN25886647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RV4FGDXFM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869116 SAMN25886815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RVMWCVQ5G/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869117 SAMN25886646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RWP9K87G6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869118 SAMN25887258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-RX2KJ7H8T/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869119 SAMN25886814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RX77BQAXF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869120 SAMN25886813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RX7H537GS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869121 SAMN25886291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-RY7XUYHMQ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869122 SAMN25886812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RZD3NXWNR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869123 SAMN25886165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-S2NQ2W44Y/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869124 SAMN25886645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-S4GTSAFYS/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869125 SAMN25886290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S4JM85XY7/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869126 SAMN25886644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-S4KE47T7V/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869127 SAMN25887112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TWC5NYA48/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869128 SAMN25886372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-TWJMTVDWB/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869129 SAMN25887111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TXNPEP9ZY/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Pacific Islander collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869130 SAMN25887110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TXP8FCG23/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869131 SAMN25886790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TXZWRP5QK/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869132 SAMN25886159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-TYMUDBNRC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869133 SAMN25886483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-TZ98Q9F28/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869134 SAMN25887109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-U2C2AWUK4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869135 SAMN25886789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U2QAY55Q7/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869136 SAMN25886639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-U3CS88ZX6/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869137 SAMN25886788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U447SJP5G/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869138 SAMN25886397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U3GWCBGDP/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869139 SAMN25886158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-U49JVD8E5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869140 SAMN25886482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-U4YEYSZBH/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869141 SAMN25886638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-U5J9JS73T/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869142 SAMN25887108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-U68XAD9J4/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869143 SAMN25886516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-U55X8HRYC/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869144 SAMN25886396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-U77CFGNVH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869145 SAMN25886787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U7UE4EUVS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869146 SAMN25886157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-U7QBN6XR5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869147 SAMN25886375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-U83NBKBAZ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869148 SAMN25886284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-U87ZW9CCJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869149 SAMN25886786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U88DE4U4C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869150 SAMN25886156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-U8GYTFD2C/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869151 SAMN25887107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-U9FYCGP3P/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869152 SAMN25886785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UB47ECQRR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869153 SAMN25886783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UBY8HQ2V5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869154 SAMN25886784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UBX7DHFA7/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869155 SAMN25887106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UDCY4DB75/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869156 SAMN25886283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-UEVHF24F5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869157 SAMN25886155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-UGT7BY2WX/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869158 SAMN25886782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UHGG3737T/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869159 SAMN25886762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WG6QZCDMD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869160 SAMN25887228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WH55ZRFXC/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869161 SAMN25886761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WH6HR5EZ2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869162 SAMN25886278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WKAVRF45K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869163 SAMN25886760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WMT7RUAPS/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869164 SAMN25886147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WPBST85JT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869165 SAMN25886759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WPF4MXF3E/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869166 SAMN25887098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WQFJKC5DB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869167 SAMN25886758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WRFRRNXT6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869168 SAMN25886389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WRJB2KJGS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869169 SAMN25886757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WS6BZJUZY/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869170 SAMN25887097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WTNRDCF3P/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869171 SAMN25887096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WUZA9RSSN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869172 SAMN25886277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-WV385ZEXR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869173 SAMN25886371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-WWG599WQ6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869174 SAMN25886507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WX2E4F87D/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869175 SAMN25886756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WXBPGCUC2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869176 SAMN25887227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WX4V22CD3/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869177 SAMN25887095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-WXPGXJX6E/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869178 SAMN25887094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X23JXWMWM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869179 SAMN25886755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X2H3QGHXW/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869180 SAMN25886146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-X2QSS2HCA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869181 SAMN25887093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X3HNSYSUU/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869182 SAMN25886388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-X4678G7SA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869183 SAMN25886276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-X5DDKGSDN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869184 SAMN25886131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-X6Q527MGX/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869185 SAMN25886754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X77UR6NKR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869186 SAMN25886753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X7RVJPGXM/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869187 SAMN25886752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X8JVYGYWE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869188 SAMN25886255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PR-CDC-STM-X8WXPCZ67/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Puerto Rico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869189 SAMN25886275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-X99KP28S2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869190 SAMN25887090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y2TCBP5GJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869191 SAMN25887092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X9U88GVDR/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869192 SAMN25887089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y3GW84UQ6/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869193 SAMN25887088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y58VQKK7N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869194 SAMN25886744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Y44UP297M/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869195 SAMN25886142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Y6WRB2FGR/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869196 SAMN25886387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Y7P3WFE2G/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869197 SAMN25886506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y9DAM4VRG/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869198 SAMN25886621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-Y8YGH9KQ5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869199 SAMN25886620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YAA86GQDM/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869200 SAMN25886141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YB3DCD3HW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869201 SAMN25887087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-YEM84EZS9/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869202 SAMN25886618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YFGDGWV7B/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869203 SAMN25886619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YERSHPUMT/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869204 SAMN25886386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YG5X8R4FJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869205 SAMN25886617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YGY93CFFS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869206 SAMN25886140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YHX2ZT77Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869207 SAMN25886616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YHAET4BRJ/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869208 SAMN25886500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-YJE8D2CM5/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869209 SAMN25887086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-YJN7FUVSV/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869210 SAMN25887085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-YKVBVEXZY/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869211 SAMN25886265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YKCQHHXS7/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869212 SAMN25886139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YNCGZNN2Z/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869213 SAMN25886138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YQMF4BMDC/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869214 SAMN25886743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YPBXM67XE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869215 SAMN25886505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YTQQJQMPE/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869216 SAMN25886385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YTU6Y584N/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869217 SAMN25886137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-YTBXVBM78/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869218 SAMN25886264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YUFW34Q3F/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869219 SAMN25886742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YUN59PVBV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869220 SAMN25886615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YWCA6P9YD/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869221 SAMN25886741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YUTQR7PMS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869222 SAMN25886384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YXARZ45YC/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869223 SAMN25886236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-593UW6YF7/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869224 SAMN25886717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-59KDT7Y4Q/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869225 SAMN25887209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5ARWMJNEG/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869226 SAMN25886716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5C9SGND5U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869227 SAMN25887208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5AYWA5CZU/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869228 SAMN25886352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5CAXQZMHS/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869229 SAMN25886574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5CJGDRE9Q/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869230 SAMN25887051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5DQJ2AF88/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869231 SAMN25887050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5DQZ3ARZZ/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869232 SAMN25887207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5E7YQ6H3J/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869233 SAMN25887206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5ESXZY24H/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869234 SAMN25887049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5E2GQTHCC/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869235 SAMN25886235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5GH2WV9FY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869236 SAMN25887048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5GWTYFG5K/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869237 SAMN25886234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5HMWVMTMA/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869238 SAMN25886452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5HXJ2B2RW/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869239 SAMN25886359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-5K5V66WJR/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869240 SAMN25886451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-5M97PXTJP/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869241 SAMN25886351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5HZE2KSSN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869242 SAMN25887047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5MK6JKT3Y/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869243 SAMN25886715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5MDEXGTYB/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869244 SAMN25886573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-5MZZUMKUK/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869245 SAMN25887205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5P7GMP8C5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869246 SAMN25887046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5N4QBHHHN/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869247 SAMN25886233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5NZEXRMDN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869248 SAMN25887204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5P7MGHPVM/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869249 SAMN25887044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5S9WXSUC7/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 32 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869250 SAMN25887045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5PGKDDFWV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869251 SAMN25886350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5Q5E5K4XT/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869252 SAMN25887043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5SF7DS2BH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869253 SAMN25887203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5SXX5UXNG/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869254 SAMN25887042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5SVNF4RK6/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869255 SAMN25886990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ABN4VRKDX/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869256 SAMN25887186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ABYQ99N2W/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869257 SAMN25886473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ACFRVFMZN/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869258 SAMN25886989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ACNBHDGFF/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869259 SAMN25886217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ACSNHW5YQ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869260 SAMN25886987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AFH9TN38S/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869261 SAMN25886988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ADUQZF783/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869262 SAMN25886694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AF82MYU57/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869263 SAMN25886986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AFSSNCCDY/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869264 SAMN25886561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AG6TP5Z4U/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869265 SAMN25886693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AG7TPK2BD/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869266 SAMN25886692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AGK74MQMW/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869267 SAMN25886368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-AHKQ3XJXV/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869268 SAMN25886691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-AK82Q3TH4/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869269 SAMN25886601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-AM52NKS53/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869270 SAMN25886985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AM9PE79RJ/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869271 SAMN25886336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ANBMDU58Z/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869272 SAMN25886984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ANP3T294B/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869273 SAMN25887185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AQSTYJE3J/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869274 SAMN25886216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AQZREAG7Z/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869275 SAMN25886215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AR9PDSQWU/2022 collected_by 'Helix' collection_date 2022-01-27 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869276 SAMN25886983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ARR37PHU5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869277 SAMN25886982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AS9X4AF67/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869278 SAMN25887252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-ASGFUS749/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869279 SAMN25886335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AT39DS2G2/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869280 SAMN25887184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ATYMSGR7V/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869281 SAMN25887183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AUCTRDQ8J/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869282 SAMN25887182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AUWB92PC6/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name None BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869283 SAMN25887181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AVKBTNAEC/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869284 SAMN25887180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AVYYJAUG8/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869285 SAMN25886980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AZP4TZ5J2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869286 SAMN25886981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AZKMEED6N/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869287 SAMN25886679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FQU6KRUC2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869288 SAMN25886680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FPXVNBRZN/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869289 SAMN25886194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FRXM8NGVB/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869290 SAMN25886922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FS333Z2X2/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869291 SAMN25886549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FUDHHQV9K/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869292 SAMN25887161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FVQWSGSE5/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869293 SAMN25886921 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FWCV9499Q/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869294 SAMN25886920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G2ECQ2WFY/2022 collected_by 'Helix' collection_date 2022-01-16 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869295 SAMN25886548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-FYSXYSKJX/2022 collected_by 'Helix' collection_date 2022-01-30 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869296 SAMN25887160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-G2JZWTKNH/2022 collected_by 'Helix' collection_date 2022-01-29 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869297 SAMN25886678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-G3ZVUNKHC/2022 collected_by 'Helix' collection_date 2022-01-18 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12869298 SAMN25886547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-G6SMKDJEM/2022 collected_by 'Helix' collection_date 2022-01-17 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated