SRS12874797 SAMN25823185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-22Q593T5V/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874798 SAMN25823298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-23ZG27EPH/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874799 SAMN25823428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CT-CDC-STM-248FFK7K3/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874800 SAMN25823520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2N2QYPPCR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874801 SAMN25822451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-2N67FH6PZ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874802 SAMN25823230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-2NPY2QAZD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874803 SAMN25823297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-2PHTDVW3D/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874804 SAMN25823424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2PJM2RQFJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874805 SAMN25823519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2S3P9D8R4/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874806 SAMN25823518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-2SG5ZX8Y9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874807 SAMN25823530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-2UB38FTNX/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874808 SAMN25823423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-32HD5SUGK/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874809 SAMN25822532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-33VYYKK5F/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874810 SAMN25822528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-38J2QRP99/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874811 SAMN25823229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-39AAC82NN/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874812 SAMN25823517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3BANMCAF9/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874813 SAMN25823516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3EH25KB2B/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874814 SAMN25823296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-3FQEHZPF7/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874815 SAMN25823422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3GZH2RXCK/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874816 SAMN25823295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-3PWE8W5SS/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 49 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874817 SAMN25822577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-3RG5584EU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874818 SAMN25822493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-3TAY2H84S/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874819 SAMN25823240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/ID-CDC-STM-3XMZR84TC/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874820 SAMN25823515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-44FYQRQ7V/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874821 SAMN25823514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-44TTH4JN2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874822 SAMN25823421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-46EPBZX24/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874823 SAMN25822546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-49EB2TRCQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874824 SAMN25823184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-4CTCAAUSV/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874825 SAMN25822530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-4EY7NTZMX/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874826 SAMN25823529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-4FC377QFK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874827 SAMN25823420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4HE9X3XKY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874828 SAMN25823513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-4J62M89Q4/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874829 SAMN25822455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WWU99JE3G/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874830 SAMN25823247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WYNFXS64U/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874831 SAMN25823232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-X33MU8HV2/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874832 SAMN25823439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X48ZQRPJ3/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874833 SAMN25823438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X4N39GC5R/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874834 SAMN25823308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-X67W5RS3Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874835 SAMN25823307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XBZNGARSA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874836 SAMN25822580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-XC7XWPD72/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874837 SAMN25823437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-XCF72VEFF/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874838 SAMN25823436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-XCHVYRAH9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874839 SAMN25823306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XGT5KFNB9/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874840 SAMN25822500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XJ7H79Q4C/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874841 SAMN25823246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XNRMU2EW4/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874842 SAMN25822499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XPEAWAR2M/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874843 SAMN25822454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-XS5N2REFD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874844 SAMN25823435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-XW2WNYCQ2/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874845 SAMN25823245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XW8NNDJV7/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874846 SAMN25823198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-XW9RVJCK8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874847 SAMN25823434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Y3XXUG7ZP/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874848 SAMN25822556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-Y653D8FZQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874849 SAMN25823197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-Y69MBX3VH/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874850 SAMN25823305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Y6G8HT6QF/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874851 SAMN25822446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-Y9TG7QYDQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874852 SAMN25823433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-YA4J93RNX/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874853 SAMN25823196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-YCFWG7VKA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874854 SAMN25823304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YCSB4J4JY/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874855 SAMN25822533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-YCTF6VDCA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874856 SAMN25823244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YHU8FD9HA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874857 SAMN25822498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-YKNJFE9FY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874858 SAMN25823303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-YQ77PTNSR/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874859 SAMN25822555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YT2MQYH4X/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874860 SAMN25822554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YYTA64PE6/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 33 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874861 SAMN25823432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Z9KSTFQ7X/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874862 SAMN25822553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ZAR3NKGFN/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874863 SAMN25823302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZBSH2XG3G/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874864 SAMN25823243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZDEQUPGZ7/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874865 SAMN25823301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZDUSJ967X/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874866 SAMN25822547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-ZEEVKMQB4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874867 SAMN25822497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-ZFURF6YWW/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874868 SAMN25823300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZGQPYDAKR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874869 SAMN25822540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-ZHX97FCUZ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874870 SAMN25823242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZPMMM88SK/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874871 SAMN25823431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZTCC2N5CS/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874872 SAMN25823231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-ZTMDV8S3J/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874873 SAMN25823430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZV4NAMW6R/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874874 SAMN25823241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ZWD5UERYZ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874875 SAMN25823299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZY6U2SUCP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874876 SAMN25823266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-MKF98V5CE/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874877 SAMN25823467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MKRBZAX3Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874878 SAMN25823212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MMPKC9NYF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874879 SAMN25823355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MPSZC5VV6/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874880 SAMN25823354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MQHEZRK6X/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874881 SAMN25823353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MQQ48U4UN/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874882 SAMN25822566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MRX3R44EB/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874883 SAMN25823466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MS4N4TCTS/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874884 SAMN25823465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MSR96BCB2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874885 SAMN25823352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MTEPQEYGS/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874886 SAMN25823351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MU6YAE3WJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.39 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874887 SAMN25823350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MWHSQZRFX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874888 SAMN25823211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-MZCWH65QB/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874889 SAMN25823349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N3U5RPQXD/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874890 SAMN25823464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-N8V6NGMBM/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874891 SAMN25823348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N925FEVFW/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874892 SAMN25823210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-N9Q8YF6C3/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874893 SAMN25822507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NDGVRZSQ6/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874894 SAMN25822583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NDUB5CB6V/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874895 SAMN25823209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-NFP8DW3UB/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874896 SAMN25823235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-NHZBH382C/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874897 SAMN25823429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CO-CDC-STM-NJ2SGM8KH/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874898 SAMN25823347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NMGBFHFN3/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874899 SAMN25823346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NP3CMKC67/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874900 SAMN25823345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P35FPKUA9/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874901 SAMN25823524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-P3DAJXSAE/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874902 SAMN25823186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-P56EHKNGT/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874903 SAMN25823344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P5KYAFUXF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874904 SAMN25823234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-PFBFCW5BH/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874905 SAMN25823265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PH83QDAZD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874906 SAMN25823343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PR2ASMZ77/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874907 SAMN25823523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-PUYWYV7KQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874908 SAMN25823294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4K5URFY33/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874909 SAMN25823419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4QEU2JEA8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874910 SAMN25822490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4SKTK6RSU/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874911 SAMN25823528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-4TTB3BWK5/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874912 SAMN25823193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-4UV4QMV9Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874913 SAMN25823418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4V775B329/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874914 SAMN25823417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4WACWTNMJ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874915 SAMN25823416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4WAMHN4PC/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874916 SAMN25823512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-4XPZVE4S3/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874917 SAMN25823228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-52H339FQK/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name B.1.617.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874918 SAMN25823293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-54S6K2RAC/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874919 SAMN25823415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-56AKHSYPA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874920 SAMN25823511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5BY2DMQZE/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874921 SAMN25823510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5DUGNR8GE/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874922 SAMN25822489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5HVT68WUJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874923 SAMN25822488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5N8EHAM58/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874924 SAMN25823509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-5NDJMBC8Q/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 35 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874925 SAMN25822552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-5PA7EQHX4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874926 SAMN25822578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/ME-CDC-STM-5SDSB44H9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874927 SAMN25823292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5SUSRM6VP/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874928 SAMN25823527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-5SXKHE96M/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874929 SAMN25823426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-5TAVDXXFA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874930 SAMN25823183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5TNAPRMJR/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874931 SAMN25822487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5WV25CPEQ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874932 SAMN25822527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-5WYYEVS7X/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874933 SAMN25822496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/RI-CDC-STM-5Z5UK83GE/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874934 SAMN25822486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-5Z7KMUSGQ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874935 SAMN25822526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-68CCKEE53/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874936 SAMN25823414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6G23FWWT5/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874937 SAMN25823291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-6HR8REX6E/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874938 SAMN25823508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6M585U8CR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874939 SAMN25822536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-6NUZH8K37/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874940 SAMN25822543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-8SVD99FUG/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874941 SAMN25822483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-8WA3ZSSGE/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874942 SAMN25822524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8WD8V6J2Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874943 SAMN25823503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8Y2XTSSV4/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874944 SAMN25823404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8YGBC353Y/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874945 SAMN25823289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-92YNT8AT4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874946 SAMN25823502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-9BX6Z5Q5P/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874947 SAMN25822482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-954CTCWPD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874948 SAMN25823182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-9DEQHYU4H/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874949 SAMN25822447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WV-CDC-STM-9ERBGR8K8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874950 SAMN25823501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-9FSTVBZZR/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874951 SAMN25823500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-9G5XRPTDH/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874952 SAMN25823403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9JHGE5XSK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874953 SAMN25823427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DC-CDC-STM-9K4BQQQHK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874954 SAMN25822548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MS-CDC-STM-9KUHN3UWD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874955 SAMN25822574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-9SFFNMQQG/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874956 SAMN25823223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9T2VF4WWC/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874957 SAMN25823402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9SNU7M4VA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874958 SAMN25823222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9T62Y4ETA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874959 SAMN25823288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-9VW79B9D6/2022 collected_by 'Helix' collection_date 2022-01-23 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874960 SAMN25823221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-9XPEAK6J7/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874961 SAMN25822523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-9YNX5P9MV/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874962 SAMN25822522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A3K2CAG9A/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874963 SAMN25822481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-A2VMBNP7G/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874964 SAMN25823189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-A4HXXAVTM/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874965 SAMN25823287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-A9E7ESAZB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874966 SAMN25823499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-AA4G6JS3A/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874967 SAMN25823220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-AAN74KPT8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874968 SAMN25823188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-AB9CCCHHU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874969 SAMN25822573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-ABU6EF9SA/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874970 SAMN25823401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ADCYCXBT2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874971 SAMN25823498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ACZCJETVX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874972 SAMN25822521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-AFRXJ3UAW/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874973 SAMN25823400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AGBUQ9HBB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874974 SAMN25823399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AHZ6UWFY3/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874975 SAMN25823238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-AJM2N9P8N/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874976 SAMN25823195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-AJE4ECQPF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Not Provided collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874977 SAMN25823398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AM82H8Y46/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874978 SAMN25823181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ANJERH938/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874979 SAMN25823286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-APEWPZE84/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874980 SAMN25822480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ASVTHEURZ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874981 SAMN25823397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AT2V5FBVU/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874982 SAMN25822531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OK-CDC-STM-AVYYTNDC4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874983 SAMN25823396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AW7YF7Y7N/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874984 SAMN25823187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-AXJKF7U9S/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874985 SAMN25823395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AXR889BNR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874986 SAMN25823394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AY3AQJ6ZV/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874987 SAMN25823219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-B2WPS8RY9/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874988 SAMN25823285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-B4CT7A5BN/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874989 SAMN25823180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-B53F8W63Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874990 SAMN25822520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-B566F383T/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874991 SAMN25823179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-B5RX5HA9N/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874992 SAMN25823393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BB4NKWVJY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874993 SAMN25823392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BB6MMYTYF/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874994 SAMN25822572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BCW7SQT3U/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874995 SAMN25823391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BE3BWVW7Q/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874996 SAMN25823218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-BG7ACNMTT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874997 SAMN25822571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-BKVF3QA8M/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874998 SAMN25823284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-BNWVPK8Y9/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12874999 SAMN25822479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BQGTTF36J/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875000 SAMN25822519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BR7XTYGPD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875001 SAMN25823390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BUEWAKU62/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875002 SAMN25823389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BUPFJQ7AQ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875003 SAMN25823388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BWTAGRU5M/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875004 SAMN25823480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FZFA8SR4W/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875005 SAMN25823373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G2RYH5PK8/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875006 SAMN25822510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-G36VN3VTU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875007 SAMN25823216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-G5TMKVW6R/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875008 SAMN25823276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-G7B9XNHDP/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875009 SAMN25822471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-GBJSETUQ8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875010 SAMN25823372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GE4H3BWYY/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875011 SAMN25822535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-GFREQMTRB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875012 SAMN25822509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GFYMFAN6V/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875013 SAMN25822570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GHM86TR8T/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875014 SAMN25822495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SC-CDC-STM-GNXHXRUS9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875015 SAMN25822569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GPWVTSVFA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875016 SAMN25823371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GQNXQW64J/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875017 SAMN25823479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-GS3E6HDQU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875018 SAMN25822494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SD-CDC-STM-GXFKTN4HF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875019 SAMN25823370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GZ2FTS6NQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875020 SAMN25823369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H34TMKZ3Z/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875021 SAMN25823368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H5T7EBN3P/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875022 SAMN25823275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-H5ZCHGP8J/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875023 SAMN25823367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H74Q7A73A/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875024 SAMN25823478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-H76ZK5RZT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875025 SAMN25823366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H774HQRFN/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875026 SAMN25823274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-H9QRTJ9JV/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875027 SAMN25823273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HBV3BC2QH/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875028 SAMN25823365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HEPVPA4KK/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875029 SAMN25823364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HFCYB5SMP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875030 SAMN25823363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HJ8J68VTD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875031 SAMN25823215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HM77BSCS5/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875032 SAMN25823272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-HPTEAYFXR/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875033 SAMN25822508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HRBKAKFUW/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875034 SAMN25823477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HT6HT9ZG4/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875035 SAMN25823476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HTC472WGR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875036 SAMN25823525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-HTDMES32D/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875037 SAMN25823475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-HUYQYVFBH/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875038 SAMN25822470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-HWUAF3QWP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875039 SAMN25823214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-J2WGSW636/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875040 SAMN25822544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-J2YJ579QR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875041 SAMN25823362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J7E574VP2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875042 SAMN25823474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-J88GZZ2ZG/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875043 SAMN25823473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-J93EBF675/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875044 SAMN25823213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JB2K638SS/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875045 SAMN25823361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JF7937BMJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875046 SAMN25823532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-JHFK2D782/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875047 SAMN25823236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-JNENFHKU2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875048 SAMN25823271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-JU4VUTAM7/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875049 SAMN25822568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-JWHMMZR2B/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875050 SAMN25823360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JWKJS5UEH/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875051 SAMN25823472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JYBJD9DFX/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875052 SAMN25823359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JZJW7AN83/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875053 SAMN25823358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K9ZW9E6HZ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875054 SAMN25823471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JZTTBJA5A/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875055 SAMN25822469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-KAEVJECC7/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875056 SAMN25823357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KCGXEQXGZ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875057 SAMN25823356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KKNXBVGPF/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875058 SAMN25823270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KEQ8J3T2Y/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875059 SAMN25822579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-KR4FJ8XHS/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875060 SAMN25823268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KTWCXJGJT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875061 SAMN25823269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KT87HSZY8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875062 SAMN25823267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-KV2XPMY9A/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875063 SAMN25822537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-KZ73CNQ9U/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875064 SAMN25823470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-M3TNM9FHG/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875065 SAMN25823469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MCHYZ6UDR/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875066 SAMN25823468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MCND4QFHY/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875067 SAMN25822567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MDNFYQBHJ/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875068 SAMN25823342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PV4MQXQYX/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 39 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875069 SAMN25822539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NM-CDC-STM-PWFSCYTAP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875070 SAMN25823264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PWX492YHB/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875071 SAMN25823463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-PXT2GRFA9/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875072 SAMN25822582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PXXAY35QP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875073 SAMN25823208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PYTMRZ5D2/2022 collected_by 'Helix' collection_date 2022-01-23 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875074 SAMN25823341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PYNSCBWV4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875075 SAMN25823462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Q53S98QCU/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race American Indian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875076 SAMN25823263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-Q7EXGRJW7/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875077 SAMN25823262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-Q86NSK8UA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875078 SAMN25822468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Q9BNAH2JY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875079 SAMN25823461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-Q9MWPBPX5/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875080 SAMN25822581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-QACE6ZU3T/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875081 SAMN25822565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QD3U3MY74/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875082 SAMN25823460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-QHV4AE5F9/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875083 SAMN25823340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QJK39ZVSP/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875084 SAMN25823339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QNGU65DXM/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875085 SAMN25822506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QPBWZEZ52/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875086 SAMN25823207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QQP7RZMC4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875087 SAMN25823261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-QTP69H47G/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875088 SAMN25823338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QTQ3UMH47/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875089 SAMN25823206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-QX2PZGC5H/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875090 SAMN25822491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-QZBHQX2Z7/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875091 SAMN25822467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-R464WFT89/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875092 SAMN25823459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-R64S7NZ9D/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875093 SAMN25823260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-R6CNJ5N5B/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875094 SAMN25823458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-R6APZ353Z/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875095 SAMN25823205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-R8N7EEMWQ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875096 SAMN25823337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-R8UN7Z3MJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875097 SAMN25822505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-R9BN3S75F/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875098 SAMN25822466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-RBD72WZNB/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875099 SAMN25823457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RBG4WVVAR/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875100 SAMN25823256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SY7RQU5X9/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875101 SAMN25823255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-T6D7QW2F2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875102 SAMN25823328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-T3JJN4A5M/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875103 SAMN25823327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-T6Y8DHHDJ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875104 SAMN25823522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-T8VBGYB9E/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875105 SAMN25823326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-T8XNPYHB4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875106 SAMN25823325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TBAQQJ6M5/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875107 SAMN25823324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TDU5HZUEH/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875108 SAMN25823448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TE7DEJWFW/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 19 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875109 SAMN25823323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TEJV6NJTR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875110 SAMN25823322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TFCAYA6PS/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875111 SAMN25823447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TGTGVGER6/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875112 SAMN25822561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TJBCRAJ6C/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875113 SAMN25823321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TJXDBRRV5/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875114 SAMN25822461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-TMMYPJTTB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875115 SAMN25823320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TN2B4Y5A2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875116 SAMN25823319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TP6U5MJNH/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875117 SAMN25823446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-TSYD7SW4E/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875118 SAMN25822452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-TY6ZXDSV6/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875119 SAMN25822550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-U5VZXMJ9P/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875120 SAMN25823445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-U924ZDJXP/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875121 SAMN25823254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UARYAHU2H/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875122 SAMN25822541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-UB27SM7NY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875123 SAMN25823443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UGE554GB4/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875124 SAMN25823444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UB7UWRV6K/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875125 SAMN25823442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UHJXJAMNQ/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875126 SAMN25823253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-UJFX63P22/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875127 SAMN25822560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UKA4H69FN/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875128 SAMN25822559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UN9WDV96R/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875129 SAMN25823441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-UP8CU2AMP/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875130 SAMN25823318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UQKX6A7DU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875131 SAMN25822485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6SPP2XV95/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875132 SAMN25823233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-UPMQSCWDP/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875133 SAMN25822538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NV-CDC-STM-6UFWGGZKK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875134 SAMN25823413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6UXA8BJTA/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875135 SAMN25823412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6VN8UFQ4N/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875136 SAMN25823410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6ZS8Y2NQC/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875137 SAMN25823507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-73SQR5YDV/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875138 SAMN25823411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6XGC82XFV/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875139 SAMN25822576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-74KPVJTVU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875140 SAMN25823409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-73UEMFUQ4/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875141 SAMN25822575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-767ADKWF4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875142 SAMN25823408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-778R9X3JZ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875143 SAMN25823407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-79PZGZZ3X/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875144 SAMN25823226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7C6Y8WBC8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875145 SAMN25823406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7CD9ACSX8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875146 SAMN25823227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7AWXTQPH7/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875147 SAMN25823405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7DK5JM5Q8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875148 SAMN25823533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-7EKM7JHH8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875149 SAMN25823239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-7R2S64PKW/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875150 SAMN25822450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WA-CDC-STM-82XEWVEV5/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875151 SAMN25823225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7WRXE8YCY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875152 SAMN25822484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-836J7UR22/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875153 SAMN25822525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-86QWFEG3X/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875154 SAMN25823506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-85935NW4U/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875155 SAMN25823505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-86ZMNDKQR/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875156 SAMN25822492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-8ANERV5VA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875157 SAMN25823192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-8BV7BE2A6/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875158 SAMN25823191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-8GC5KNZNK/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875159 SAMN25823224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-8CA2ANJUN/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875160 SAMN25823504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8H4FDG2J9/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875161 SAMN25823190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-8H7ZDZ7BT/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875162 SAMN25822551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-8J8B9HRRD/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875163 SAMN25823290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-8K9H4QQ2Y/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875164 SAMN25823178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-BXQNSB4EP/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875165 SAMN25823194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/KY-CDC-STM-C26PJ3G3Y/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875166 SAMN25822478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-C79W58AXS/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875167 SAMN25823497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-C2TFYHXAE/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875168 SAMN25822545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NC-CDC-STM-C7PGSDK3V/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875169 SAMN25822477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-C93GMX5F7/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875170 SAMN25823217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CGBKG5PAZ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875171 SAMN25823496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CAX6MABA8/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875172 SAMN25822518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CCA6TTMDF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875173 SAMN25822517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CHZPUJ9FV/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875174 SAMN25823237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-CJ4VXEPHN/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875175 SAMN25823495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-CJPZ9H6C8/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875176 SAMN25823387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CN7BB5DD9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875177 SAMN25823526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-CQ4UMS7YT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875178 SAMN25823386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CNCHNS38W/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875179 SAMN25823385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CTS7SKMB2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875180 SAMN25822516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-CVS6NQTSS/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875181 SAMN25822476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CVYPECHSW/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875182 SAMN25823384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CY6CKF2VR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875183 SAMN25823383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-D6VDFA4B7/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875184 SAMN25823382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DABCY9W9Z/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875185 SAMN25823494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DDPKCPGGX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875186 SAMN25823381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DJ68ZJJM6/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875187 SAMN25822453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/VA-CDC-STM-DJCN8A9PG/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875188 SAMN25823380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DNA9AQJT2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875189 SAMN25822449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-DTGR5R2TK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875190 SAMN25823283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DSZ8CQNX5/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875191 SAMN25822584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-DVMWN33HB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875192 SAMN25823493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-DZPZXC285/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875193 SAMN25823492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-E2KS254ND/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875194 SAMN25823379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-E5KMHGST7/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875195 SAMN25822475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-E8T8EQ9DK/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875196 SAMN25823491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-E92MFFPWE/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875197 SAMN25822515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-E9SB4YETD/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875198 SAMN25823282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EFU3EGFZ2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875199 SAMN25822529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OR-CDC-STM-EGXHFEWAG/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875200 SAMN25822474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EMY4VAVSM/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875201 SAMN25823378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EQAQ98PAJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875202 SAMN25823281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ENHHKB6RS/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875203 SAMN25823280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-ET3XMW7MF/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875204 SAMN25822514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-EU9KZYFKH/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875205 SAMN25823490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ETV2B4KHA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875206 SAMN25823279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-EWAJMNTU4/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875207 SAMN25823377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ERZGTUWE5/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875208 SAMN25823376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EWE6VXV5F/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875209 SAMN25823278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-F54CWXPSX/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875210 SAMN25822473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-F4A55J29E/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875211 SAMN25823489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-EXCYFP2Z6/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875212 SAMN25823488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-F554W9ASX/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875213 SAMN25823487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FB9P5GCMY/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875214 SAMN25823277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-F7MJR52G9/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875215 SAMN25823375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FC4T9ZPMU/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875216 SAMN25822542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NJ-CDC-STM-FFMSGKN7Z/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875217 SAMN25822472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FHMSDVT8R/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875218 SAMN25823374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FMAZ736EG/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875219 SAMN25822513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FMC56RX44/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875220 SAMN25823486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FRDWX7VXG/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875221 SAMN25823485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FRFZ9SUQB/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875222 SAMN25823484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FRQ9M66CM/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875223 SAMN25823483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FRUA6ZS8N/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875224 SAMN25822512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FUCTEYUKR/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875225 SAMN25823482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FSNGVS74F/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875226 SAMN25823481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-FYB9VEQXH/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875227 SAMN25822511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FV7T4BMV2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875228 SAMN25823456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RCB63C8XJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875229 SAMN25823336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RH2N2T4DU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875230 SAMN25823455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RPGW266VE/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875231 SAMN25822465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-RQTPE77DY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875232 SAMN25822564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RQYWVHC24/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875233 SAMN25823204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-RW7CBZGJ4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875234 SAMN25823259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RSNN2TDK4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875235 SAMN25823335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RWFFUY2CV/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875236 SAMN25822464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-RXGPDM4QX/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875237 SAMN25822563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-RY7AHSC87/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875238 SAMN25823334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S2CG8XZN4/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875239 SAMN25823454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RZM3C2R4X/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875240 SAMN25823453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RZUC2ZZPA/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875241 SAMN25823333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S472QR72E/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875242 SAMN25822534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/OH-CDC-STM-S4V8966JH/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875243 SAMN25822463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-S3VMNJMB7/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875244 SAMN25823332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S4WVHYTMN/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875245 SAMN25823452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-S74W65B8U/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875246 SAMN25823451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-S77A67PUU/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875247 SAMN25823450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-S8KSQECGW/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Black collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875248 SAMN25823449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SAWGSNQPV/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875249 SAMN25823258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SK5SVW3R6/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875250 SAMN25822562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-SMEHG83KG/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875251 SAMN25822462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-SN4ZVF2JK/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875252 SAMN25823331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SNH2T852B/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875253 SAMN25823257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SNUYWBP68/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875254 SAMN25822504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SS5V8MSRJ/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875255 SAMN25823330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SSAKZVJKQ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875256 SAMN25822503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SSFXNY2ZU/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875257 SAMN25823425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/DE-CDC-STM-SSABNY43B/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875258 SAMN25822502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-SU6NKY4WJ/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875259 SAMN25823329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SW9D7E4QF/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875260 SAMN25823317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UUBHQTENG/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875261 SAMN25823203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-URDNGMFS3/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875262 SAMN25822460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V642BS6UT/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875263 SAMN25823316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V6SC7CM3R/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875264 SAMN25823252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-V6VD2NV5J/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875265 SAMN25822459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-V722BCXA9/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875266 SAMN25822558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-VAXMSECK4/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875267 SAMN25823202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VB4TSKSPT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875268 SAMN25823315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VEK8DKC6T/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875269 SAMN25823531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-VGD6N3CGT/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875270 SAMN25823440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-VK4V65WH2/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875271 SAMN25823201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-VKMZAUBZ3/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875272 SAMN25823251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VUP9PHJNG/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875273 SAMN25823314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VWWSWFY2F/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875274 SAMN25823250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-W2GV9P4WW/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875275 SAMN25822501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-W2H66HC3X/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875276 SAMN25822458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-W2UUFHN5K/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875277 SAMN25823313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-W63RUMYSA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875278 SAMN25823312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-W8BF5TJE2/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875279 SAMN25822457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WA7CH3ENR/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875280 SAMN25823200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WC2BPCR44/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875281 SAMN25822549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MO-CDC-STM-WDR4U87YA/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875282 SAMN25823249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WE7TAPCU6/2022 collected_by 'Helix' collection_date 2022-01-24 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875283 SAMN25822456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WH76WQ5U7/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875284 SAMN25823521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-WJPA8RPKT/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875285 SAMN25823311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WH8JT2BUW/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875286 SAMN25823310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WP9X6ZVSC/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875287 SAMN25822448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-WJPWEY25V/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875288 SAMN25822557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WQ8GNVMMH/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875289 SAMN25823248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-WW562RNFY/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875290 SAMN25823199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WSJQ5CEDD/2022 collected_by 'Helix' collection_date 2022-01-26 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12875291 SAMN25823309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WSSJFTUJU/2022 collected_by 'Helix' collection_date 2022-01-25 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated