SRS12889175 SAMN26515674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-E8N592M96/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889176 SAMN26515819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EEZ7T2UQ7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889177 SAMN26515818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EHEGSBWJB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889178 SAMN26515527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-EHZKKM7SN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889179 SAMN26515817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EMJ3DJ5US/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889180 SAMN26515816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-EQBHRVUNZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889181 SAMN26515573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-EVTNVQQB4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889182 SAMN26515611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-EXJ6XS4GB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889183 SAMN26515572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F2ZJJ6MWJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889184 SAMN26515815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F45J932FH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889185 SAMN26515571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F4CMDCYGH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889186 SAMN26515570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-F4EVZQJ4A/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889187 SAMN26515814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-F8QDX64HE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889188 SAMN26515813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FCMDCPR4D/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889189 SAMN26515642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FJC385JC4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889190 SAMN26515526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-FJRUH4MQN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889191 SAMN26515812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FKFAMXK36/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889192 SAMN26515641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-FMKTQHVA7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889193 SAMN26515569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FMM7QRHDA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889195 SAMN26515567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FSUB9X7DU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889196 SAMN26515811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FT42R9GBT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889197 SAMN26515810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FTGR84S5D/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 34 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889198 SAMN26515697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-FV38XSWHR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889199 SAMN26515566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FX5MAZY3Q/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889200 SAMN26515809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FXB3WEU96/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889201 SAMN26515538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-FXWR2FRE2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889202 SAMN26515808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FYGJ65F2K/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889203 SAMN26515807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-FZ49C4VBW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889204 SAMN26515806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-G5UK9FEPE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889205 SAMN26515640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-G8KKDBCNX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889206 SAMN26515610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-G9TTCHR93/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889207 SAMN26515556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-NG865X8ZW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889208 SAMN26515777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NHQ5K8ESW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889209 SAMN26515636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-NKS4T927C/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889210 SAMN26515776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NMFENT6FX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889211 SAMN26515775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NSBDS22GK/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889212 SAMN26515774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-NT2EKFMGZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889213 SAMN26515695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NWDC44WXR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889214 SAMN26515604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-NXB6FHSW7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889215 SAMN26515773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P5MYAREAJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889216 SAMN26515772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P8FBTAJDN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889217 SAMN26515771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-P9ZPXSC4K/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889218 SAMN26515694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PCK2TT4V7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889219 SAMN26515684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-PD4UQAKW4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889220 SAMN26515770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PGHF93TSN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889221 SAMN26515664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-PHTNDHGHR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889222 SAMN26515769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PM7WJQ5GB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889223 SAMN26515603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-PPQZNWDWS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889224 SAMN26515768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PPWU3USDT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889225 SAMN26515767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-PQJCTPMCC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889226 SAMN26515635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PRDCJZ7HH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889227 SAMN26515693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-PS3UAVKR8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889228 SAMN26515522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-PVW8ZBTQM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889229 SAMN26515634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-PYR4P3PB7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889230 SAMN26515594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-Q5RAYV4UN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889231 SAMN26515766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q5WUK6DXZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889232 SAMN26515765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Q7BVEVJPS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889233 SAMN26515555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-Q8ZG2CU8N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889234 SAMN26515554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QAD9U9WS8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889235 SAMN26515553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QJG28VCP4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889236 SAMN26515602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-QJUU2DRH4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889237 SAMN26515552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QPJ86BZMJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889238 SAMN26515764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-QQVF84AKQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889239 SAMN26515551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-QR467UYRT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889240 SAMN26515763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RCGSWPRXS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889241 SAMN26515873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RDJXEK2WT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889242 SAMN26515692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RGRFRMRES/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889243 SAMN26515762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RK22BCVXC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889244 SAMN26515691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-RKVX939CD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889245 SAMN26515761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RNJV4TYJ7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889246 SAMN26515760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RRUQ5J5UQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889247 SAMN26515759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-RVSFYQYTS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889248 SAMN26515872 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-RZ2VNGJUV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889249 SAMN26515550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-S3U2WM5JT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889250 SAMN26515758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S3XDSJDA5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889251 SAMN26515757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S6Y2XU552/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889252 SAMN26515756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-S8ADJUUGF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889253 SAMN26515755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SAMY2F8X3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889254 SAMN26515754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SDM4D9EPU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889255 SAMN26515871 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SE6EFCDFC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889256 SAMN26515521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-SGFK49AS7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889257 SAMN26515633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-SGQ3GKJ3Y/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889258 SAMN26515870 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-SK8Z5N98V/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889259 SAMN26515753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SPQFG5ZGY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889260 SAMN26515690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-SQEQ3SAWP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889261 SAMN26515752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SS67GJMX9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889262 SAMN26515540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/SD-CDC-STM-SUKXWRMTZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889263 SAMN26515751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-SY6FHA26R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889264 SAMN26515632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-T4FM4EHHC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889265 SAMN26515631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-T4HAXPSYK/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889266 SAMN26515750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-T6Q5N54MN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889267 SAMN26515663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-T7CX3YC8X/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889268 SAMN26515549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TCAUZKGCY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889269 SAMN26515548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-TFWQQJ2CM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889270 SAMN26515630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-TFZ94W9XS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889271 SAMN26515619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-24JAZVBPF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889272 SAMN26515591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2BADVC3TP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889273 SAMN26515867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2HXF32VVD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889274 SAMN26515866 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2MMDR5NVV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889275 SAMN26515749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-THTBHJ7GE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889276 SAMN26515748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TJEDCKCAY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889277 SAMN26515747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TJWNZWXGZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889278 SAMN26515746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TKDB7WC43/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889279 SAMN26515745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TM9C9EW8S/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889280 SAMN26515744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TP5DR9MVD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889281 SAMN26515629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-TPCTJ8792/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889282 SAMN26515743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-TRXHARRVE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889283 SAMN26515601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-TTEEVA9QJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889284 SAMN26515683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IL-CDC-STM-U22JKA5RU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889285 SAMN26515742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U659VFNZP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889286 SAMN26515741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-U6PECWVXU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889287 SAMN26515740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UCP3HQEGM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889288 SAMN26515739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UE573G863/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889289 SAMN26515738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UGRDWZJ6C/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889290 SAMN26515737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UQ7SF83AZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889291 SAMN26515736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UR4FF6JHA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 92 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889292 SAMN26515735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UTW7Q7CRB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889293 SAMN26515734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UU4S9UDYT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889294 SAMN26515733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UUX2ZHTNN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889295 SAMN26515547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-UVM7KAHJB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889296 SAMN26515732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-UWCGZRXCE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889297 SAMN26515600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-UXV9BXG9X/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889298 SAMN26515731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-V3ASR3EWR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889299 SAMN26515689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-V7C6M87GC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889300 SAMN26515546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-V7T2Q3PE9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889301 SAMN26515599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-V9RVG4CVS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889302 SAMN26515730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VA7WX9DJY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889303 SAMN26515688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-VC6YTNSW5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 4 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889304 SAMN26515729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VCP5QHHS6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889305 SAMN26515545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VCV2E9HPT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889306 SAMN26515628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VDUDZ5Q3U/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889307 SAMN26515711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XQ5WER8A3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889308 SAMN26515710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XSWD3KNEN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889309 SAMN26515886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-XY4JSWB27/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race American Indian or Alaska Native collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889310 SAMN26515709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Y2Z5ZVS56/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889311 SAMN26515624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-YNAPZBM3P/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889312 SAMN26515686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-YWVRFSGTB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889313 SAMN26515596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-YZADGC65E/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889314 SAMN26515623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-Z4EBHNRJT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889315 SAMN26515622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-Z4ETYEHF3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889316 SAMN26515708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-Z6WRMJTFA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889317 SAMN26515518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-Z6YV8GUSZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889318 SAMN26515707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZEW5U228T/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889319 SAMN26515868 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-ZGTARTWR6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889320 SAMN26515706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZMB7RDA7T/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889321 SAMN26515705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZRBDRKA2B/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889322 SAMN26515517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ZWBWGVGDH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889323 SAMN26515516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-ZWZNERNYZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889324 SAMN26515621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-ZXM6AZ63H/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889325 SAMN26515704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-ZXNZGF9QR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889326 SAMN26515703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-2XWUN5V8V/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889327 SAMN26515659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-2YKP4W7E3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889328 SAMN26515865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-2YVUA7NDZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889329 SAMN26515590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-2ZF6UGVR9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889330 SAMN26515658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-2ZYR33RKZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889331 SAMN26515618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-33WFXMFKY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889332 SAMN26515864 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-37TK5SWVU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889333 SAMN26515863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-393GK7NW2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 48 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889334 SAMN26515702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-398GKVU36/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889335 SAMN26515862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3DSY9484R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889336 SAMN26515861 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-3HECY6BBZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889337 SAMN26515537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3MC8JMXP7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889338 SAMN26515589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-3U6P2DZNA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889339 SAMN26515620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MD-CDC-STM-3W82KV5JA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889340 SAMN26515889 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AL-CDC-STM-3WUY9MV78/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889341 SAMN26515885 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-3Y7AGM9AP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889342 SAMN26515536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-3YCY8NFP5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889343 SAMN26515657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-3YWZFCUW6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889344 SAMN26515588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-42PQT7Z4N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889345 SAMN26515682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-478FHZ7QQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889346 SAMN26515701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4HNNCYQ5N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 37 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889347 SAMN26515700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-4K6KNH9M3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889348 SAMN26515587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4T4YFP2HM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 35 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889349 SAMN26515586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-4UWDD5M83/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889350 SAMN26515535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-4WV2GEVXP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889351 SAMN26515860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-4WX4Y5R34/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889352 SAMN26515534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-553P2M47Y/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889353 SAMN26515859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5AHPP4HFU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889354 SAMN26515656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-5JJ6RWDH3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889355 SAMN26515858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5PK7CT6QT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889356 SAMN26515857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5WJRF2A8N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889357 SAMN26515699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-5YNFVT6YE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889358 SAMN26515794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-K4PFHWS9W/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889359 SAMN26515666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-K8CF74MCF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889360 SAMN26515793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KDWHSEJ7P/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889361 SAMN26515792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KDYB2T4V3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889362 SAMN26515877 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-KDZA5NQVP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889363 SAMN26515791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KKZJHW89J/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889364 SAMN26515790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KUPPJMRV5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889365 SAMN26515665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-KQ5QSVUFH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889366 SAMN26515789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KV746D5F3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889367 SAMN26515788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-KWXKPWSVT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889368 SAMN26515639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-KZYR7X9YE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889369 SAMN26515787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M527ETTAY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889370 SAMN26515786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-M79F4PVSH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889371 SAMN26515638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-MAM42W7YG/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889372 SAMN26515876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MCM9BM7YA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889373 SAMN26515785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MDGNJHRXE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889374 SAMN26515784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MGBERBUF9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889375 SAMN26515782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MGMJH49X3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889376 SAMN26515783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MGK9F8REW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889377 SAMN26515525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-MH4H8ZNV9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889378 SAMN26515637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-MJBR38C5U/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889379 SAMN26515605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-MR55HJ387/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889380 SAMN26515781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-MS4V6D58W/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889381 SAMN26515875 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-MTGKVY9J2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Decline collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889382 SAMN26515557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-MUVMJDGUD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889383 SAMN26515524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-MWWQQFRJN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889384 SAMN26515780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N25MREKE3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889385 SAMN26515874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-N2DGWJUNX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889386 SAMN26515779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N6GW32TQY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889387 SAMN26515778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-N7PCFHB5V/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889388 SAMN26515696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-NDB97XDYE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889389 SAMN26515523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-NFHMKQMQJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889390 SAMN26515856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-5ZWGUFQGW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889391 SAMN26515855 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-649DSPBEK/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889392 SAMN26515854 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-64AV8MPJW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889393 SAMN26515853 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6626UVVHM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889394 SAMN26515585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-69ZFY582Z/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889395 SAMN26515884 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6CQFCNAWX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889396 SAMN26515852 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6MHB8WXU9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889397 SAMN26515655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-6MW6K2DZ2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889398 SAMN26515883 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-6NSBW3V5X/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889399 SAMN26515851 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-6NTG6R7KZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889400 SAMN26515533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-6PHA2FUSU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889401 SAMN26515539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TN-CDC-STM-6SM82CETX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889402 SAMN26515584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6SW9RQNWG/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889403 SAMN26515583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-6WDPSN7UE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889404 SAMN26515617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-6WGSQMG8P/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889405 SAMN26515681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-766N6MZ5Y/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889406 SAMN26515882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-76FRTSPY2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889407 SAMN26515582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-793K3NXV7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889408 SAMN26515850 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-799HWBA82/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 62 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889409 SAMN26515616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-7BQTK7J3W/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889410 SAMN26515581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-7D8BTZUUQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889411 SAMN26515680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-7NY6WMFY6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889412 SAMN26515654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-7QN8JNZTR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889413 SAMN26515849 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-7TY69SAM7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889414 SAMN26515848 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8293QTW8C/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889415 SAMN26515653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-84F22WWZ2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889416 SAMN26515580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-88GZBDF74/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889417 SAMN26515847 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-894PP9S8R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889418 SAMN26515579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8FV4TWR35/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889419 SAMN26515578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8HEG3FDEC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889420 SAMN26515846 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8J5R66VSE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889421 SAMN26515881 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-8JCKFAN9K/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889422 SAMN26515845 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-8MS9EDYQ6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889423 SAMN26515652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-8QFUT2GQM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889424 SAMN26515577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-8VXTHS7AN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889425 SAMN26515576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-969UUUPJX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889426 SAMN26515888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-989J8GF84/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889427 SAMN26515615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-98AMPTHXN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889428 SAMN26515595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MN-CDC-STM-98CGSXR88/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889429 SAMN26515844 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9DAFX5W3T/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889430 SAMN26515843 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9EGFXQC99/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889431 SAMN26515842 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9JRZ4QVHU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889432 SAMN26515660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/LA-CDC-STM-9MJP9QQQ2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889433 SAMN26515841 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9ND3KZEUH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889434 SAMN26515840 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9S4V83MNR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889435 SAMN26515839 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9UUVXVYRS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889436 SAMN26515838 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9VWMGU6FA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889437 SAMN26515651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-9Y9D8SCG6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889438 SAMN26515837 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-9ZCZUJYW2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889439 SAMN26515836 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A24GV7YJM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889440 SAMN26515835 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-A38G4J4MW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889441 SAMN26515679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-A5U7PSNUD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889442 SAMN26515593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-A6CF96QFF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889443 SAMN26515575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-A7R9KD52B/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889444 SAMN26515650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-A8A35WEKC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889445 SAMN26515880 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-A8ZCJNSPE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889446 SAMN26515614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-A95QB2QBH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889447 SAMN26515649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-AEKBEWPNS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889448 SAMN26515648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-AKKRPFG9K/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889449 SAMN26515532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-AMXVYP3XW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889450 SAMN26515834 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AN2RGB2B6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889451 SAMN26515833 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-AUHZR9HMT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889452 SAMN26515531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-B2UENRUXF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889453 SAMN26515613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-B6F8JQEJ4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889454 SAMN26515879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-B6FMJRE4V/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889455 SAMN26515832 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-B9687BPFY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889456 SAMN26515831 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BB8ZCQXM9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889457 SAMN26515515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/WI-CDC-STM-BCDAWJW8R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889458 SAMN26515830 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BJW3YNEYQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889459 SAMN26515530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-BKU7TJ88J/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889460 SAMN26515574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-BWA2Q4JAY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889461 SAMN26515887 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/AZ-CDC-STM-BM6DA8MSZ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889462 SAMN26515829 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-BYPSQUF7J/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889463 SAMN26515828 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-C28M7VKPD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889464 SAMN26515647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-C4GKXET8F/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889465 SAMN26515612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-C5MMQRRZG/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889466 SAMN26515827 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-CBDHSET6R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889467 SAMN26515646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CBYQ9DJB7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889468 SAMN26515645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-CE5BQJGPH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889469 SAMN26515529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-CQ46MDEQE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889470 SAMN26515592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/NY-CDC-STM-CNAY6CP4X/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889471 SAMN26515678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-CQBQWU5FJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889472 SAMN26515677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-D56NH6M2H/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889473 SAMN26515826 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-D49WPVUX6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889474 SAMN26515825 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-D9TXC2ZA3/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889475 SAMN26515824 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DH3BZ22VT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889476 SAMN26515698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-DHTYDKRAN/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889477 SAMN26515676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DJ9X5E6Y5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889478 SAMN26515644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-DQFKWRH4J/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889479 SAMN26515675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-DV8R2CCNG/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889480 SAMN26515643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-DW4S6P84K/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889481 SAMN26515823 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DW3465XZ7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889482 SAMN26515822 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-DZ8NS95XS/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889483 SAMN26515528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-DZ2B96VRR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889484 SAMN26515820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-E8HYNZFA8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889485 SAMN26515821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-E7Z9KZC94/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889486 SAMN26515565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GGYHQMJPF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889487 SAMN26515609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GC52KP7AU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889488 SAMN26515805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GHCSDTCQ6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889489 SAMN26515673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-GHFNRQYJD/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889490 SAMN26515804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-GK568E2WJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889491 SAMN26515608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-GHMX7382H/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889492 SAMN26515564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-GX4G7DZNP/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889493 SAMN26515607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-H28JKAY69/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889494 SAMN26515803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H36NT9VU5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889495 SAMN26515802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-H4NVN8FMJ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889496 SAMN26515563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-H64YN25EU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889497 SAMN26515672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-H7WNNJFKA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889498 SAMN26515671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HBJTATVQ8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889499 SAMN26515562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HEPJCEXJ8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889500 SAMN26515670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HF66Q9ME2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889501 SAMN26515669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HGCH7JTTW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889502 SAMN26515801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HHTQ2TVRV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889504 SAMN26515800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-HTZXGC9CM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889505 SAMN26515560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-J2T9VW58U/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889506 SAMN26515561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-HWFURJMKT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889507 SAMN26515798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JCA5CMM3T/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889508 SAMN26515799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-J66EGMT2W/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889509 SAMN26515667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-JFX6T2V2N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889510 SAMN26515559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JF7DSPMMV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889194 SAMN26515568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-FQRP63V6N/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889503 SAMN26515668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-HT64JCYPF/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889511 SAMN26515878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-JKVCY8WM4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Asian collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889512 SAMN26515797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JJMY66PHM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889513 SAMN26515796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JR7SHUFK4/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889514 SAMN26515685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IA-CDC-STM-JSESDFMK8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889515 SAMN26515795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-JVFJEJD7D/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889516 SAMN26515558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-JZKK2BGEC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889517 SAMN26515606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-K426MBTA2/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889518 SAMN26515544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-VDUU93RQU/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889519 SAMN26515520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-VE937QFJA/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889520 SAMN26515728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VG8BMX9XT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889521 SAMN26515727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VGQNVPEME/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 23 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889522 SAMN26515726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VHY23RTV6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889523 SAMN26515627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-VWB3X6PT9/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Black or African American collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889524 SAMN26515725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-VXPW66EDH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889525 SAMN26515724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-W4GZMHTPK/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889526 SAMN26515543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-W28XZTNYX/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889527 SAMN26515519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/TX-CDC-STM-WDT5VT7Y6/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889528 SAMN26515723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WBYUAHMUT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889529 SAMN26515722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WGSW4EGVT/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889530 SAMN26515721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WUBFRJ88S/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889531 SAMN26515720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WUNVHR72R/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889532 SAMN26515719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WV9Y7XJYE/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889533 SAMN26515598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-WW5W8S3VB/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889534 SAMN26515718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-WXERGRUKK/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889535 SAMN26515626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-WXT4UGNPQ/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889536 SAMN26515662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-WY8WTC2Y7/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889537 SAMN26515869 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/CA-CDC-STM-X3UAB8G5Q/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889538 SAMN26515625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MA-CDC-STM-X48A2DWGR/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 41 host_race Not sure collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889539 SAMN26515717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XB546MACW/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889540 SAMN26515661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/IN-CDC-STM-X9GCHC657/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889541 SAMN26515716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XBJ69FKJH/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889542 SAMN26515597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/MI-CDC-STM-XBKBZ94ZY/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889543 SAMN26515542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XCG4D4FZV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889544 SAMN26515541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/PA-CDC-STM-XGPAD47UC/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889545 SAMN26515715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XGR5ZXXED/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889546 SAMN26515714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XH5PNJRY5/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889547 SAMN26515713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XKGRN4PRV/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Other Race collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889548 SAMN26515687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/GA-CDC-STM-XP2P3DPVM/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS12889549 SAMN26515712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 720050 PRJNA720050 Isolate SARS-CoV-2/Human/USA/FL-CDC-STM-XMEEZXYS8/2022 collected_by 'Helix' collection_date 2022-02-22 isolation_source nasal swab geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race White collection_device Nasal swab collection_method Nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 ORF1ab diagnostic_pcr_protocol_2 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 S diagnostic_pcr_protocol_3 Helix COVID-19 and Flu Test diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated