SRX475002 Oryza glumipatula leaf RNA seq Oryza Genome Evolution(OGE)- Transcriptome expriments SRP038763 PRJNA48429 SRS560808 Oryza glumipatula leaf RNAseq RNA-Seq TRANSCRIPTOMIC PolyA 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000 SRX475003 Oryza glumipatula panicle RNA seq Oryza glumipatula RNA seq SRP038763 PRJNA48429 SRS560809 Oryza glumipatula panicle RNAseq RNA-Seq TRANSCRIPTOMIC PolyA 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000 SRX475004 Oryza glumipatula root RNA seq Oryza Genome Evolution(OGE)- Transcriptome expriments SRP038763 PRJNA48429 SRS560810 SAMN02649587 RNA-Seq TRANSCRIPTOMIC PolyA 200 0 Application Read Forward 1 1 Application Read Reverse 101 Illumina HiSeq 2000 SRX621449 Oryza glumaepatula resequencing-1 <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645409"> <IDENTIFIERS> <PRIMARY_ID>SRS645409</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870170</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-2" accession="SRX621450" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621450</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-2</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645410"> <IDENTIFIERS> <PRIMARY_ID>SRS645410</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870171</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-3" accession="SRX621451" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621451</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-3</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645411"> <IDENTIFIERS> <PRIMARY_ID>SRS645411</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870172</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-4" accession="SRX621452" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621452</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-4</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645412"> <IDENTIFIERS> <PRIMARY_ID>SRS645412</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870173</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-5" accession="SRX621453" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621453</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-5</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645413"> <IDENTIFIERS> <PRIMARY_ID>SRS645413</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870174</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-6" accession="SRX621454" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621454</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-6</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645414"> <IDENTIFIERS> <PRIMARY_ID>SRS645414</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870175</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT alias="Oryza glumaepatula resequencing-7" accession="SRX621455" center_name="University of Arizona"> <IDENTIFIERS> <PRIMARY_ID>SRX621455</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">Oryza glumaepatula resequencing-7</SUBMITTER_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP038763"> <IDENTIFIERS> <PRIMARY_ID>SRP038763</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA48429</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION>First 4 bases are barcode</DESIGN_DESCRIPTION> <SAMPLE_DESCRIPTOR accession="SRS645415"> <IDENTIFIERS> <PRIMARY_ID>SRS645415</PRIMARY_ID> <EXTERNAL_ID namespace="BioSample">SAMN02870176</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY> <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE> <LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> </LIBRARY_DESCRIPTOR> <SPOT_DESCRIPTOR> <SPOT_DECODE_SPEC> <SPOT_LENGTH>200</SPOT_LENGTH> <READ_SPEC> <READ_INDEX>0</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Forward</READ_TYPE> <BASE_COORD>1</BASE_COORD> </READ_SPEC> <READ_SPEC> <READ_INDEX>1</READ_INDEX> <READ_CLASS>Application Read</READ_CLASS> <READ_TYPE>Reverse</READ_TYPE> <BASE_COORD>101</BASE_COORD> </READ_SPEC> </SPOT_DECODE_SPEC> </SPOT_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX663040" center_name="University of Arizona" alias="OG_wgs_fragment"> <IDENTIFIERS> <PRIMARY_ID>SRX663040</PRIMARY_ID> <SUBMITTER_ID namespace="University of Arizona">OG_wgs_fragment</SUBMITTER_ID> </IDENTIFIERS> <TITLE>Oryza glumipatula Illumina WGS fragment library data for de novo genome assembly: Sample O.glumipatula_wgs_fragment SRP038763 PRJNA48429 Standard Illumina Library prep SRS667926 SAMN02941241 OG_wgs_fragment WGS GENOMIC RANDOM 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000 SRX663041 OG_wgs_3kmp Oryza glumipatula Illumina WGS 3kMP library data for de novo genome assembly: Sample O.glumipatula_wgs_3k_MP SRP038763 PRJNA48429 Standard Illumina Library prep SRS667926 SAMN02941241 OG_wgs_3kmp WGS GENOMIC RANDOM 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000 SRX663042 OG_wgs_10kmp Oryza glumipatula Illumina WGS 10kMP library data for de novo genome assembly: Sample O.glumipatula_wgs_10k_MP SRP038763 PRJNA48429 Standard Illumina Library prep SRS667926 SAMN02941241 OG_wgs_10kmp WGS GENOMIC RANDOM 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000 SRX663043 OG_wgs_20kmp Oryza glumipatula Illumina WGS 20kMP library data for de novo genome assembly: Sample O.glumipatula_wgs_20k_MP SRP038763 PRJNA48429 Standard Illumina Library prep SRS667926 SAMN02941241 OG_wgs_20kmp WGS GENOMIC RANDOM 202 0 Application Read Forward 1 1 Application Read Reverse 102 Illumina HiSeq 2000