SRR19180466 AC220317_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220317.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180467 MV220315_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220315.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180468 AC220315_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220315.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180469 AC220310_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220310.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180470 AC220301_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220301.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180471 MV220127_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220127.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180472 AC220127_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220127.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180473 AC220120_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220120.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180474 MV220414_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220414.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180475 AC220414_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220414.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180476 MV220407_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220407.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180477 MV220405_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220405.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180478 AC220405_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220405.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180479 MV220317_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220317.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180480 MV220118_iseq2_R1_dehosted.fastq.gz NJDOH-2_20220118.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19180481 AC220118_iseq2_R1_dehosted.fastq.gz NJDOH-1_20220118.01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 3 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688120 NJDOH-2_20220519_iseq_R1_dehosted.fastq.gz NJDOH-2_20220519.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688121 NJDOH-1_20220519_iseq_R1_dehosted.fastq.gz NJDOH-1_20220519.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination no quality control issues identified quality_control_issues quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688122 NJDOH-2_20220517_iseq_R1_dehosted.fastq.gz NJDOH-2_20220517.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688123 NJDOH-1_20220517_iseq_R1_dehosted.fastq.gz NJDOH-1_20220517.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688124 NJDOH-2_20220512_iseq_R1_dehosted.fastq.gz NJDOH-2_20220512.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688125 NJDOH-2_20220510_iseq_R1_dehosted.fastq.gz NJDOH-2_20220510.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688126 NJDOH-1_20220510_iseq_R1_dehosted.fastq.gz NJDOH-1_20220510.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688127 NJDOH-2_20220505_iseq_R1_dehosted.fastq.gz NJDOH-2_20220505.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688128 NJDOH-2_20220602_iseq_R1_dehosted.fastq.gz NJDOH-2_20220602.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688129 NJDOH-1_20220602_iseq_R1_dehosted.fastq.gz NJDOH-1_20220602.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688130 NJDOH-2_20220531_iseq_R1_dehosted.fastq.gz NJDOH-2_20220531.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688131 NJDOH-1_20220531_iseq_R1_dehosted.fastq.gz NJDOH-1_20220531.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688132 NJDOH-1_20220526_iseq_R1_dehosted.fastq.gz NJDOH-1_20220526.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688133 NJDOH-1_20220524_iseq_R1_dehosted.fastq.gz NJDOH-1_20220524.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688134 NJDOH-2_20220428_iseq_R1_dehosted.fastq.gz NJDOH-2_20220428.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR19688135 NJDOH-2_20220426_iseq_R1_dehosted.fastq.gz NJDOH-2_20220426.01_1 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20822324 LM-wk60-R1_001_val_1.fq.gz LM_wk60 enrichment_kit AmpliSeq for Illumina SARS-CoV-2 Research Panel amplicon_PCR_primer_scheme AmpliSeq SARS-CoV-2 Research Panel for Illumina library_preparation_kit AmpliSeq Library PLUS (24 Reactions) for Illumina amplicon_size 250 quality_control_method quality_control_method_version v3.5.1 quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample dehosting_method SRA human read removal tool sequence_submitter_contact_email volodymyr.tryndyak@fda.hhs.gov raw_sequence_data_processing_method Adapter and base quality trimming SRR20828808 NJDOH-2_20220623_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220623.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828809 NJDOH-1_20220623_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220623.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828810 NJDOH-2_20220621_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220621.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828811 NJDOH-1_20220621_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220621.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828812 NJDOH-1_20220616_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220616.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828813 NJDOH-2_20220614_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220614.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828814 NJDOH-1_20220614_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220614.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828815 NJDOH-2_20220714_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220714.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828816 NJDOH-1_20220714_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220714.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828817 NJDOH-2_20220609_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220609.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828818 NJDOH-2_20220712_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220712.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828819 NJDOH-1_20220712_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220712.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828820 NJDOH-2_20220707_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220707.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828821 NJDOH-1_20220707_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220707.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination no quality control issues identified quality_control_issues quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828822 NJDOH-2_20220705_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220705.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination no quality control issues identified quality_control_issues quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828823 NJDOH-1_20220705_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220705.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination no quality control issues identified quality_control_issues quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828824 NJDOH-2_20220630_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220630.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828825 NJDOH-1_20220630_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220630.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828826 NJDOH-2_20220628_iSeq_R1_dehosted.fastq.gz NJDOH-2_20220628.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828827 NJDOH-1_20220628_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220628.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828828 NJDOH-1_20220609_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220609.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination no quality control issues identified quality_control_issues quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR20828829 NJDOH-1_20220607_iSeq_R1_dehosted.fastq.gz NJDOH-1_20220607.01_01 enrichment_kit Not Applicable amplicon_PCR_primer_scheme ARTIC V4.1 library_preparation_kit Illumina DNA prep amplicon_size 151 quality_control_method GalaxyTrakr SSQuAWK quality_control_method_version 4.0.1 quality_control_determination sequence flagged for potential quality control issues quality_control_issues low average genome coverage quality_control_details dehosting_method NCBI scrubber sequence_submitter_contact_email nicholas.palmateer@doh.nj.gov raw_sequence_data_processing_method SRR21970126 PB-wk100-R1_001_val_1.fq.gz PB_wk100 enrichment_kit Illumina COVIDSeq Assay quality_control_method quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample sequence_submitter_contact_email volodymyr.tryndyak@fda.hhs.gov raw_sequence_data_processing_method Adapter and base quality trimming library_preparation_kit ARTIC V4 amplicon_size 400 quality_control_method_version v3.5.1 dehosting_method SRA human read removal tool amplicon_PCR_primer_scheme ARTIC V4 SRR21970155 FC-wk100-R1_001_val_1.fq.gz FC_wk100 enrichment_kit Illumina COVIDSeq Assay quality_control_method quality_control_determination sequence flagged for significant quality control issues quality_control_issues no target organism identified in the sample sequence_submitter_contact_email volodymyr.tryndyak@fda.hhs.gov raw_sequence_data_processing_method Adapter and base quality trimming library_preparation_kit ARTIC V4 amplicon_size 400 quality_control_method_version v3.5.1 dehosting_method SRA human read removal tool amplicon_PCR_primer_scheme ARTIC V4