<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="1135871705163 SAMN02698516 RIFCOMPOUND2-PE-IL60-1 Experiment" accession="SRX501491" center_name="JCVI">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX501491</PRIMARY_ID>
      <SUBMITTER_ID namespace="JCVI">1135871705163 SAMN02698516 RIFCOMPOUND2-PE-IL60-1 Experiment</SUBMITTER_ID>
    </IDENTIFIERS>
    <!-- Using accessions for study and sample reference, when they are not created from JCVI. -->
    <TITLE>1135871705163 SAMN02698516 RIFCOMPOUND2-PE-IL60-1 Experiment</TITLE>
    <STUDY_REF accession="SRP040579">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP040579</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA241252</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>S. aureus strain type USA300 was exposed to multiple classes of synthetic and naturally occurring antibiotics that representative of 20 compound classes.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS582548">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS582548</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN02698516</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>RIFCOMPOUND2-PE-IL60-1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
      <SPOT_DESCRIPTOR>
        <SPOT_DECODE_SPEC>
          <SPOT_LENGTH>101</SPOT_LENGTH>
          <READ_SPEC>
            <READ_INDEX>0</READ_INDEX>
            <READ_CLASS>Application Read</READ_CLASS>
            <READ_TYPE>Forward</READ_TYPE>
            <BASE_COORD>1</BASE_COORD>
          </READ_SPEC>
        </SPOT_DECODE_SPEC>
      </SPOT_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="base caller">
          <STEP_INDEX>N/A</STEP_INDEX>
          <PREV_STEP_INDEX>N/A</PREV_STEP_INDEX>
          <PROGRAM>Illumina HiSeq 2000</PROGRAM>
          <VERSION>RTA-1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Strain</TAG>
        <VALUE>Staphylococcus aureus USA300</VALUE>
      </EXPERIMENT_ATTRIBUTE>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>Collaborating institution</TAG>
        <VALUE>Northeastern University</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
