SRX17861607 CORVASEQ-CLT-010612_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380300 CORVASEQ-CLT-010612_BioSample CORVASEQ-CLT-010612 AMPLICON VIRAL RNA PCR PromethION SRX17861608 CORVASEQ-CLT-010613_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380301 CORVASEQ-CLT-010613_BioSample CORVASEQ-CLT-010613 AMPLICON VIRAL RNA PCR PromethION SRX17861609 CORVASEQ-CLT-010614_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380302 CORVASEQ-CLT-010614_BioSample CORVASEQ-CLT-010614 AMPLICON VIRAL RNA PCR PromethION SRX17861610 CORVASEQ-CLT-010615_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380303 CORVASEQ-CLT-010615_BioSample CORVASEQ-CLT-010615 AMPLICON VIRAL RNA PCR PromethION SRX17861611 CORVASEQ-CLT-010617_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380304 CORVASEQ-CLT-010617_BioSample CORVASEQ-CLT-010617 AMPLICON VIRAL RNA PCR PromethION SRX17861612 CORVASEQ-CLT-010618_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380305 CORVASEQ-CLT-010618_BioSample CORVASEQ-CLT-010618 AMPLICON VIRAL RNA PCR PromethION SRX17861613 CORVASEQ-CLT-010619_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380306 CORVASEQ-CLT-010619_BioSample CORVASEQ-CLT-010619 AMPLICON VIRAL RNA PCR PromethION SRX17861614 CORVASEQ-CLT-010620_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380307 CORVASEQ-CLT-010620_BioSample CORVASEQ-CLT-010620 AMPLICON VIRAL RNA PCR PromethION SRX17861615 CORVASEQ-CLT-010621_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380308 CORVASEQ-CLT-010621_BioSample CORVASEQ-CLT-010621 AMPLICON VIRAL RNA PCR PromethION SRX17861616 CORVASEQ-CLT-010622_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380309 CORVASEQ-CLT-010622_BioSample CORVASEQ-CLT-010622 AMPLICON VIRAL RNA PCR PromethION SRX17861617 CORVASEQ-CLT-010623_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380310 CORVASEQ-CLT-010623_BioSample CORVASEQ-CLT-010623 AMPLICON VIRAL RNA PCR PromethION SRX17861618 CORVASEQ-CLT-010624_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380311 CORVASEQ-CLT-010624_BioSample CORVASEQ-CLT-010624 AMPLICON VIRAL RNA PCR PromethION SRX17861619 CORVASEQ-CLT-010625_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380312 CORVASEQ-CLT-010625_BioSample CORVASEQ-CLT-010625 AMPLICON VIRAL RNA PCR PromethION SRX17861620 CORVASEQ-CLT-010627_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380313 CORVASEQ-CLT-010627_BioSample CORVASEQ-CLT-010627 AMPLICON VIRAL RNA PCR PromethION SRX17861621 CORVASEQ-CLT-010628_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380314 CORVASEQ-CLT-010628_BioSample CORVASEQ-CLT-010628 AMPLICON VIRAL RNA PCR PromethION SRX17861622 CORVASEQ-CLT-010629_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380315 CORVASEQ-CLT-010629_BioSample CORVASEQ-CLT-010629 AMPLICON VIRAL RNA PCR PromethION SRX17861623 CORVASEQ-CLT-010630_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380316 CORVASEQ-CLT-010630_BioSample CORVASEQ-CLT-010630 AMPLICON VIRAL RNA PCR PromethION SRX17861624 CORVASEQ-CLT-010631_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380317 CORVASEQ-CLT-010631_BioSample CORVASEQ-CLT-010631 AMPLICON VIRAL RNA PCR PromethION SRX17861625 CORVASEQ-CLT-010632_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380318 CORVASEQ-CLT-010632_BioSample CORVASEQ-CLT-010632 AMPLICON VIRAL RNA PCR PromethION SRX17861626 CORVASEQ-CLT-010634_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380319 CORVASEQ-CLT-010634_BioSample CORVASEQ-CLT-010634 AMPLICON VIRAL RNA PCR PromethION SRX17861627 CORVASEQ-CLT-010635_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380320 CORVASEQ-CLT-010635_BioSample CORVASEQ-CLT-010635 AMPLICON VIRAL RNA PCR PromethION SRX17861628 CORVASEQ-CLT-010636_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380321 CORVASEQ-CLT-010636_BioSample CORVASEQ-CLT-010636 AMPLICON VIRAL RNA PCR PromethION SRX17861629 CORVASEQ-CLT-010637_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380322 CORVASEQ-CLT-010637_BioSample CORVASEQ-CLT-010637 AMPLICON VIRAL RNA PCR PromethION SRX17861630 CORVASEQ-CLT-010667_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380323 CORVASEQ-CLT-010667_BioSample CORVASEQ-CLT-010667 AMPLICON VIRAL RNA PCR PromethION SRX17861631 CORVASEQ-CLT-010669_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380324 CORVASEQ-CLT-010669_BioSample CORVASEQ-CLT-010669 AMPLICON VIRAL RNA PCR PromethION SRX17861632 CORVASEQ-CLT-010670_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380325 CORVASEQ-CLT-010670_BioSample CORVASEQ-CLT-010670 AMPLICON VIRAL RNA PCR PromethION SRX17861633 CORVASEQ-CLT-010671_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380326 CORVASEQ-CLT-010671_BioSample CORVASEQ-CLT-010671 AMPLICON VIRAL RNA PCR PromethION SRX17861634 CORVASEQ-CLT-010672_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380327 CORVASEQ-CLT-010672_BioSample CORVASEQ-CLT-010672 AMPLICON VIRAL RNA PCR PromethION SRX17861635 CORVASEQ-CLT-010673_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380328 CORVASEQ-CLT-010673_BioSample CORVASEQ-CLT-010673 AMPLICON VIRAL RNA PCR PromethION SRX17861636 CORVASEQ-CLT-010674_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380329 CORVASEQ-CLT-010674_BioSample CORVASEQ-CLT-010674 AMPLICON VIRAL RNA PCR PromethION SRX17861637 CORVASEQ-CLT-010675_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380330 CORVASEQ-CLT-010675_BioSample CORVASEQ-CLT-010675 AMPLICON VIRAL RNA PCR PromethION SRX17861638 CORVASEQ-CLT-010676_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380331 CORVASEQ-CLT-010676_BioSample CORVASEQ-CLT-010676 AMPLICON VIRAL RNA PCR PromethION SRX17861639 CORVASEQ-CLT-010677_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380333 CORVASEQ-CLT-010677_BioSample CORVASEQ-CLT-010677 AMPLICON VIRAL RNA PCR PromethION SRX17861640 CORVASEQ-CLT-010678_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380332 CORVASEQ-CLT-010678_BioSample CORVASEQ-CLT-010678 AMPLICON VIRAL RNA PCR PromethION SRX17861641 CORVASEQ-CLT-010639_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380334 CORVASEQ-CLT-010639_BioSample CORVASEQ-CLT-010639 AMPLICON VIRAL RNA PCR PromethION SRX17861642 CORVASEQ-CLT-010640_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380335 CORVASEQ-CLT-010640_BioSample CORVASEQ-CLT-010640 AMPLICON VIRAL RNA PCR PromethION SRX17861643 CORVASEQ-CLT-010642_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380336 CORVASEQ-CLT-010642_BioSample CORVASEQ-CLT-010642 AMPLICON VIRAL RNA PCR PromethION SRX17861644 CORVASEQ-CLT-010643_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380337 CORVASEQ-CLT-010643_BioSample CORVASEQ-CLT-010643 AMPLICON VIRAL RNA PCR PromethION SRX17861645 CORVASEQ-CLT-010644_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380338 CORVASEQ-CLT-010644_BioSample CORVASEQ-CLT-010644 AMPLICON VIRAL RNA PCR PromethION SRX17861646 CORVASEQ-CLT-010645_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380339 CORVASEQ-CLT-010645_BioSample CORVASEQ-CLT-010645 AMPLICON VIRAL RNA PCR PromethION SRX17861647 CORVASEQ-CLT-010647_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380340 CORVASEQ-CLT-010647_BioSample CORVASEQ-CLT-010647 AMPLICON VIRAL RNA PCR PromethION SRX17861648 CORVASEQ-CLT-010648_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380341 CORVASEQ-CLT-010648_BioSample CORVASEQ-CLT-010648 AMPLICON VIRAL RNA PCR PromethION SRX17861649 CORVASEQ-CLT-010649_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380342 CORVASEQ-CLT-010649_BioSample CORVASEQ-CLT-010649 AMPLICON VIRAL RNA PCR PromethION SRX17861650 CORVASEQ-CLT-010650_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380343 CORVASEQ-CLT-010650_BioSample CORVASEQ-CLT-010650 AMPLICON VIRAL RNA PCR PromethION SRX17861651 CORVASEQ-CLT-010651_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380344 CORVASEQ-CLT-010651_BioSample CORVASEQ-CLT-010651 AMPLICON VIRAL RNA PCR PromethION SRX17861652 CORVASEQ-CLT-010652_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380345 CORVASEQ-CLT-010652_BioSample CORVASEQ-CLT-010652 AMPLICON VIRAL RNA PCR PromethION SRX17861653 CORVASEQ-CLT-010653_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380346 CORVASEQ-CLT-010653_BioSample CORVASEQ-CLT-010653 AMPLICON VIRAL RNA PCR PromethION SRX17861654 CORVASEQ-CLT-010654_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380347 CORVASEQ-CLT-010654_BioSample CORVASEQ-CLT-010654 AMPLICON VIRAL RNA PCR PromethION SRX17861655 CORVASEQ-CLT-010655_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380348 CORVASEQ-CLT-010655_BioSample CORVASEQ-CLT-010655 AMPLICON VIRAL RNA PCR PromethION SRX17861656 CORVASEQ-CLT-010656_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380349 CORVASEQ-CLT-010656_BioSample CORVASEQ-CLT-010656 AMPLICON VIRAL RNA PCR PromethION SRX17861657 CORVASEQ-CLT-010658_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380350 CORVASEQ-CLT-010658_BioSample CORVASEQ-CLT-010658 AMPLICON VIRAL RNA PCR PromethION SRX17861658 CORVASEQ-CLT-010660_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380351 CORVASEQ-CLT-010660_BioSample CORVASEQ-CLT-010660 AMPLICON VIRAL RNA PCR PromethION SRX17861659 CORVASEQ-CLT-010662_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380352 CORVASEQ-CLT-010662_BioSample CORVASEQ-CLT-010662 AMPLICON VIRAL RNA PCR PromethION SRX17861660 CORVASEQ-CLT-010664_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss2b primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15380353 CORVASEQ-CLT-010664_BioSample CORVASEQ-CLT-010664 AMPLICON VIRAL RNA PCR PromethION