SRX17898244 healthy_bee_1_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415117 healthy_bee_1 healthy_bee_1_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898245 healthy_bee_1_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415117 healthy_bee_1 healthy_bee_1_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898246 diseased_bee_6_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415118 diseased_bee_6 diseased_bee_6_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898247 diseased_bee_6_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415118 diseased_bee_6 diseased_bee_6_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898248 healthy_bee_2_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415119 healthy_bee_2 healthy_bee_2_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898249 healthy_bee_2_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415119 healthy_bee_2 healthy_bee_2_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898250 healthy_bee_3_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415120 healthy_bee_3 healthy_bee_3_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898251 healthy_bee_3_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415120 healthy_bee_3 healthy_bee_3_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898252 diseased_bee_1_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415121 diseased_bee_1 diseased_bee_1_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898253 diseased_bee_1_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415121 diseased_bee_1 diseased_bee_1_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898254 diseased_bee_2_fastq1 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415122 diseased_bee_2 diseased_bee_2_fastq1 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500 SRX17898255 diseased_bee_2_fastq2 SRP402742 bp0 Illumina RNAseq libraries were prepared with the TruSeq RNA Sample Prep kit (Illumina, San Diego, CA) per the manufacturers protocol, without the poly-A isolation steps. Adapters containing six nucleotide indexes were ligated to the double-stranded cDNA. The DNA was purified between enzymatic reactions and the size selection of the library was performed with AMPure XT beads (Beckman Coulter Genomics, Danvers, MA). Libraries are assessed for concentration and fragment size using the DNA High Sensitivity Assay on the LabChip GX (Perkin Elmer, Waltham, MA) SRS15415122 diseased_bee_2 diseased_bee_2_fastq2 RNA-Seq METAGENOMIC RANDOM Illumina HiSeq 2500