<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX17899200" alias="JI2AZA_3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899200</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JI2AZA_3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100I2AZA_3_Internodes_ 100 Aza_ JAN2019_ 3 weeks recovery in vitro_ rep1</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415938">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415938</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251320</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JI2AZA_3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17899201" alias="JI2AZA_1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899201</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JI2AZA_1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100I2AZA_1_Internodes_ 100Aza_ JAN2019_  recovery in vitro_ rep2</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415939">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415939</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251321</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JI2AZA_1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17899202" alias="JI2AZA_2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899202</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JI2AZA_2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100I2AZA_2_Internodes_ 100Aza_ JAN2019_  recovery in vitro rep3</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415940">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415940</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251322</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JI2AZA_2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17899203" alias="JR2AZA_1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899203</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JR2AZA_1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100R2AZA_1_Roots_ 100 Aza_ 3 weeks recovery in vitro_ JAN2019_ rep1</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415941">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415941</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251341</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JR2AZA_1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17899204" alias="JR2AZA_3">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899204</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JR2AZA_3</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100R2AZA_3_Roots_ 3 weeks recovery in vitro_ 100 Aza_ JAN2019_ rep2</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415942">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415942</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251342</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JR2AZA_3</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17899205" alias="JR2AZA_2">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17899205</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12161120">JR2AZA_2</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>100R2AZA_2_Roots_ 100Aza_ 3 weeks recovery in vitro_ JAN2019_ rep3</TITLE>
    <STUDY_REF accession="SRP402646">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP402646</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA889596</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>After the QC procedures, mRNA from eukaryotic organisms is enriched using oligo (dT) beads. For prokaryotic samples, rRNA is removed first using a specialized kit before enrichment. The mRNA is then fragmented randomly in fragmentation buffer. First-strand cDNA was synthesised using random hexamers and reverse transcriptase. Then the second strand was generated using a custom second-strand synthesis buffer (Illumina) with dNTPs, RNase H and Escherichia coli polymerase I by nick-translation. The final cDNA library is ready after purification, terminal repair, A-tailing, adapter ligation, size selection and PCR enrichment. (Novoene protocol)</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15415943">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15415943</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31251343</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>JR2AZA_2</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>PolyA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
