SRS15423273 SAMN31271151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235720/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423274 SAMN31271150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235721/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423275 SAMN31271149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235726/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423276 SAMN31271148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235727/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423277 SAMN31271147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235734/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423278 SAMN31271146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235737/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423279 SAMN31271145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235738/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423280 SAMN31271144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235739/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423281 SAMN31271143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235741/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-05 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423282 SAMN31271142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235744/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423283 SAMN31271141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235745/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423284 SAMN31271140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6235748/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423285 SAMN31271139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236151/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423286 SAMN31271138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236154/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-06 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423287 SAMN31271137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236156/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423288 SAMN31271136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236157/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423289 SAMN31271135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236159/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423290 SAMN31271134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236163/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423291 SAMN31271133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236165/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423292 SAMN31271132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236166/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423293 SAMN31271131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236167/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423294 SAMN31271130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236172/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423295 SAMN31271129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236173/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423296 SAMN31271128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236174/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-08 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423297 SAMN31271127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236175/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423298 SAMN31271126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236177/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423299 SAMN31271125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236178/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423300 SAMN31271124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236179/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423301 SAMN31271123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236180/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423302 SAMN31271122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236182/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-05 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423303 SAMN31271121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236185/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423304 SAMN31271120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236186/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423305 SAMN31271119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236188/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423306 SAMN31271118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236190/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423307 SAMN31271117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236193/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423308 SAMN31271116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236194/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423309 SAMN31271115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236197/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-08 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423310 SAMN31271114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236200/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423311 SAMN31271113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236251/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423312 SAMN31271112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236252/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-05 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423313 SAMN31271111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236253/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-08 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423314 SAMN31271110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236255/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423315 SAMN31271109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236256/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423316 SAMN31271108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236257/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423317 SAMN31271107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236258/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423318 SAMN31271106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236259/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423319 SAMN31271073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236269/2022 collected_by SD Public Health Laboratory collection_date 2022-07-13 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423320 SAMN31271072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236270/2022 collected_by SD Public Health Laboratory collection_date 2022-07-12 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423321 SAMN31271163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236277/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-09 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423322 SAMN31271090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236278/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-09 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423323 SAMN31271089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236279/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423324 SAMN31271190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236280/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-11 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423325 SAMN31271162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236283/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423326 SAMN31271071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236288/2022 collected_by SD Public Health Laboratory collection_date 2022-07-13 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423327 SAMN31271070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236291/2022 collected_by SD Public Health Laboratory collection_date 2022-07-13 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423328 SAMN31271105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236294/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423329 SAMN31271161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236297/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-10 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423330 SAMN31271160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236298/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423331 SAMN31271069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236299/2022 collected_by SD Public Health Laboratory collection_date 2022-07-13 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423332 SAMN31271189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236300/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-11 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423333 SAMN31271159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236403/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-09 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423334 SAMN31271158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236406/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-08 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423335 SAMN31271088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236408/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423336 SAMN31271188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236409/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-12 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423337 SAMN31271087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236410/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-10 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423338 SAMN31271086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236411/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-12 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423339 SAMN31271187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236412/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-13 isolation_source nasopharyngeal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423340 SAMN31271085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236413/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-09 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423341 SAMN31271084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236414/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423342 SAMN31271186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236415/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-11 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423343 SAMN31271083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236416/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-08 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423344 SAMN31271082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236419/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-10 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423345 SAMN31271157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236421/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423346 SAMN31271156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236425/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-10 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423347 SAMN31271185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236427/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-11 isolation_source nasopharyngeal swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423348 SAMN31271184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236429/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-11 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423349 SAMN31271081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236430/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-08 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423350 SAMN31271155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236435/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-05 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423351 SAMN31271068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236439/2022 collected_by SD Public Health Laboratory collection_date 2022-07-13 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423352 SAMN31271154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236442/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-10 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423353 SAMN31271153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236443/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-05 isolation_source nasopharyngeal swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423354 SAMN31271067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236446/2022 collected_by SD Public Health Laboratory collection_date 2022-07-12 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423355 SAMN31271066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/SD-CDC-2-6236447/2022 collected_by SD Public Health Laboratory collection_date 2022-07-12 isolation_source Unknown geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Unknown collection_method Unknown purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423356 SAMN31271152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MN-CDC-2-6236448/2022 collected_by "MN PHL Division, Minnesota Department of Health" collection_date 2022-07-07 isolation_source Nasal midturbinate swab geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex missing host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423357 SAMN31271104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236502/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-12 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423358 SAMN31271080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236507/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423359 SAMN31271183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/AR-CDC-2-6236510/2022 collected_by "AR Dept. of Health-PHL, Molecular Diagnostics" collection_date 2022-07-13 isolation_source Nasal midturbinate swab geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasal midturbinate swab collection_method Nasal midturbinate swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423360 SAMN31271079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/NJ-CDC-2-6236511/2022 collected_by NJ Public Health and Environmental Laboratories collection_date 2022-07-13 isolation_source Anterior nasal swab geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423361 SAMN31271174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236882/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-08 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423362 SAMN31271182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236888/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423363 SAMN31271103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236891/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423364 SAMN31271102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236892/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423365 SAMN31271173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236893/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-02 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423366 SAMN31271101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236895/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423367 SAMN31271181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236952/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423368 SAMN31271180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236953/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.47 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423369 SAMN31271172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236954/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423370 SAMN31271078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-6236960/2022 collected_by Philadelphia Department of Public Health collection_date 2022-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423371 SAMN31271171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236962/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-09 isolation_source nasopharyngeal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423372 SAMN31271170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236963/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-06 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423373 SAMN31271179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236964/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423374 SAMN31271178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236965/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423375 SAMN31271169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236972/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-04 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423376 SAMN31271100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236973/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423377 SAMN31271099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236974/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423378 SAMN31271098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236975/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423379 SAMN31271097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236977/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423380 SAMN31271168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236978/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-07 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423381 SAMN31271167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236980/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-04 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423382 SAMN31271096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236981/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423383 SAMN31271095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236982/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423384 SAMN31271065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/VA-CDC-2-6236984/2022 collected_by VA-Division of Consolidated Laboratory Services collection_date 2022-06-29 isolation_source nasopharyngeal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423385 SAMN31271177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6236986/2021 collected_by DE Public Health Laboratory collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.103 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423386 SAMN31271077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-6236988/2022 collected_by Philadelphia Department of Public Health collection_date 2022-06-13 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423387 SAMN31271094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6236993/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423388 SAMN31271166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6236990/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-08 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423389 SAMN31271165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6237051/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-10 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423390 SAMN31271076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-6236998/2022 collected_by Philadelphia Department of Public Health collection_date 2022-06-17 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423391 SAMN31271064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/VA-CDC-2-6237057/2022 collected_by VA-Division of Consolidated Laboratory Services collection_date 2022-07-06 isolation_source nasopharyngeal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423392 SAMN31271075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-6237055/2022 collected_by Philadelphia Department of Public Health collection_date 2022-06-13 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423393 SAMN31271074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/PA-CDC-2-6237061/2022 collected_by Philadelphia Department of Public Health collection_date 2022-06-16 isolation_source nasopharyngeal swab geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.12.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423394 SAMN31271164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/ID-CDC-2-6237060/2022 collected_by ID Bureau of Laboratories collection_date 2022-07-11 isolation_source Anterior nasal swab geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Anterior nasal swab collection_method Anterior nasal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423395 SAMN31271176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6237063/2021 collected_by DE Public Health Laboratory collection_date 2021-09-30 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423396 SAMN31271063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/VA-CDC-2-6237069/2022 collected_by VA-Division of Consolidated Laboratory Services collection_date 2022-07-06 isolation_source nasopharyngeal swab geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423397 SAMN31271093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6237070/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423398 SAMN31271175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/DE-CDC-2-6237071/2021 collected_by DE Public Health Laboratory collection_date 2021-09-29 isolation_source nasopharyngeal swab geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal swab collection_method Nasopharyngeal swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name AY.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423399 SAMN31271091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6237074/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex male host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15423400 SAMN31271092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 689853 PRJNA689853 Isolate SARS-CoV-2/Human/USA/MP-CDC-2-6237072/2022 collected_by Commonwealth Healthcare Center collection_date 2022-07-07 isolation_source nasopharyngeal swab geo_loc_name Northern Mariana Islands host Homo sapiens host_disease COVID-19 host_sex female host_age Unknown host_race Unknown collection_device Nasopharyngeal Swab collection_method Nasopharyngeal Swab purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N diagnostic_pcr_protocol_1 Swift Primers V2 diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated