<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX17923105" alias="B-abortus2308W">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17923105</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12166858">B-abortus2308W</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>B. abortus wildtype strain</TITLE>
    <STUDY_REF accession="SRP403126">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP403126</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA891361</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic libraries were prepared with the rapid barcoding sequencing SQK-RBK004 kit (Oxford Nanopore Technologies, UK) for sequencing on a minION platform using the MinKNOW software, followed by base calling and conversion of the raw data to FASTQ format with Guppy v.3.6.0, reads quality assessment with nanoplot 1.40.2, nanofilt 2.8.0 and porechop 0.2.4 to finally get the whole genome assembly with Unicycler v0.4.8</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15440973">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15440973</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31324765</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>B-abortus2308W</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX17923106" alias="B-abortus-deltabvrRS">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX17923106</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12166858">B-abortus-deltabvrRS</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>B. abortus delta bvrRS strain</TITLE>
    <STUDY_REF accession="SRP403126">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP403126</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA891361</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Genomic libraries were prepared with the rapid barcoding sequencing SQK-RBK004 kit (Oxford Nanopore Technologies, UK) for sequencing on a minION platform using the MinKNOW software, followed by base calling and conversion of the raw data to FASTQ format with Guppy v.3.6.0, reads quality assessment with nanoplot 1.40.2, nanofilt 2.8.0 and porechop 0.2.4 to finally get the whole genome assembly with Unicycler v0.4.8</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15440974">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15440974</PRIMARY_ID>
          <EXTERNAL_ID namespace="BioSample">SAMN31324766</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>B-abortus-deltabvrRS</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
