SRS15457479 SAMN31353434 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7449/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328026 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7449/2021 genbank_accession OP613981 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7449/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457478 SAMN31353433 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7448/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328025 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7448/2021 genbank_accession OP613982 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7448/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457477 SAMN31353432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7443/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328024 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7443/2021 genbank_accession OP613983 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7443/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457476 SAMN31353333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7166/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327934 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7166/2021 genbank_accession OP614076 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7166/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457475 SAMN31353431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-29 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7441/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328023 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7441/2021 genbank_accession OP613984 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7441/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457474 SAMN31353430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7434/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328022 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7434/2021 genbank_accession OP613985 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7434/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457473 SAMN31353429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7431/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328021 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7431/2021 genbank_accession OP613986 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7431/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457472 SAMN31353428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7428/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328020 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7428/2021 genbank_accession OP613987 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7428/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457471 SAMN31353427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7425/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328019 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7425/2021 genbank_accession OP613988 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7425/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457470 SAMN31353426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7410/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328018 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7410/2021 genbank_accession OP613989 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7410/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457469 SAMN31353425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7406/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328017 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7406/2021 genbank_accession OP613990 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7406/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457468 SAMN31353424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7404/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7404/2021 genbank_accession OP613991 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7404/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457467 SAMN31353423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-31 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7401/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328016 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7401/2021 genbank_accession OP613992 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7401/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457466 SAMN31353421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-31 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7388/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328015 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7388/2021 genbank_accession OP613994 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7388/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457465 SAMN31353420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7374/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328014 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7374/2021 genbank_accession OP613995 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7374/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457464 SAMN31353419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7369/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7369/2021 genbank_accession OP613996 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7369/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457463 SAMN31353418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7366/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328013 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7366/2021 genbank_accession OP613997 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7366/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457487 SAMN31353334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7173/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327936 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7173/2021 genbank_accession OP614074 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7173/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457486 SAMN31353441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7460/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328033 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7460/2021 genbank_accession OP613974 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7460/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457485 SAMN31353440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7459/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328032 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7459/2021 genbank_accession OP613975 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7459/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457484 SAMN31353439 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7457/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328031 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7457/2021 genbank_accession OP613976 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7457/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457483 SAMN31353438 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7456/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328030 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7456/2021 genbank_accession OP613977 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7456/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457482 SAMN31353437 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-29 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7453/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328029 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7453/2021 genbank_accession OP613978 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7453/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457481 SAMN31353436 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7452/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328028 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7452/2021 genbank_accession OP613979 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7452/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457480 SAMN31353435 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7450/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328027 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7450/2021 genbank_accession OP613980 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7450/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457488 SAMN31353442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7461/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328034 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7461/2021 genbank_accession OP613973 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7461/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457489 SAMN31353443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7468/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328035 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7468/2021 genbank_accession OP613972 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7468/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457490 SAMN31353444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7469/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328036 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7469/2021 genbank_accession OP613971 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7469/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457491 SAMN31353445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7471/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328037 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7471/2021 genbank_accession OP613970 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7471/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457492 SAMN31353446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7473/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328038 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7473/2021 genbank_accession OP613969 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7473/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457493 SAMN31353447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7475/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328039 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7475/2021 genbank_accession OP613968 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7475/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457494 SAMN31353448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7477/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328040 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7477/2021 genbank_accession OP613967 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7477/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457495 SAMN31353449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7478/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328041 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7478/2021 genbank_accession OP613966 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7478/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457496 SAMN31353450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7479/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7479/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7479/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457497 SAMN31353451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7480/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328042 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7480/2021 genbank_accession OP613965 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7480/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457498 SAMN31353335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7174/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327937 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7174/2021 genbank_accession OP614073 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7174/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457499 SAMN31353338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7178/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327940 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7178/2021 genbank_accession OP614070 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7178/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457500 SAMN31353482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7559/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328070 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7559/2021 genbank_accession OP613935 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7559/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457501 SAMN31353483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7562/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328071 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7562/2021 genbank_accession OP613934 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7562/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457502 SAMN31353484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7563/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328072 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7563/2021 genbank_accession OP613933 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7563/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457503 SAMN31353485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7564/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328073 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7564/2021 genbank_accession OP613932 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7564/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457504 SAMN31353486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7565/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328074 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7565/2021 genbank_accession OP613931 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7565/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457505 SAMN31353487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7567/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328075 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7567/2021 genbank_accession OP613930 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7567/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457506 SAMN31353488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7569/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328076 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7569/2021 genbank_accession OP613929 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7569/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457507 SAMN31353489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7570/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7570/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7570/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457508 SAMN31353490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7572/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7572/2021 genbank_accession OP613928 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7572/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457509 SAMN31353491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7573/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328077 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7573/2021 genbank_accession OP613927 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7573/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457510 SAMN31353339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7180/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327941 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7180/2021 genbank_accession OP614069 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7180/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457511 SAMN31353492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7574/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328078 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7574/2021 genbank_accession OP613926 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7574/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457512 SAMN31353493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7575/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328079 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7575/2021 genbank_accession OP613925 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7575/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457513 SAMN31353494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7578/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328080 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7578/2021 genbank_accession OP613924 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7578/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457514 SAMN31353495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7579/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328081 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7579/2021 genbank_accession OP613923 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7579/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457515 SAMN31353496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7580/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328082 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7580/2021 genbank_accession OP613922 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7580/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457516 SAMN31353497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7581/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328083 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7581/2021 genbank_accession OP613921 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7581/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457517 SAMN31353498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7583/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328084 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7583/2021 genbank_accession OP613920 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7583/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457518 SAMN31353499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7590/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328085 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7590/2021 genbank_accession OP613919 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7590/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457519 SAMN31353500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7591/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328086 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7591/2021 genbank_accession OP613918 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7591/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457520 SAMN31353501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7592/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328087 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7592/2021 genbank_accession OP613917 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7592/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457521 SAMN31353340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7181/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327942 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7181/2021 genbank_accession OP614068 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7181/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457522 SAMN31353502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7594/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328088 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7594/2021 genbank_accession OP613916 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7594/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457523 SAMN31353503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7595/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328089 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7595/2021 genbank_accession OP613915 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7595/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457524 SAMN31353504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7599/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328090 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7599/2021 genbank_accession OP613914 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7599/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457525 SAMN31353505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7602/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328091 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7602/2021 genbank_accession OP613913 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7602/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457526 SAMN31353506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7604/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328092 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7604/2021 genbank_accession OP613912 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7604/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457527 SAMN31353507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7605/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328093 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7605/2021 genbank_accession OP613911 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7605/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457528 SAMN31353508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7606/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328094 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7606/2021 genbank_accession OP613910 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7606/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457529 SAMN31353509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7607/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328095 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7607/2021 genbank_accession OP613909 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7607/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457530 SAMN31353510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7608/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328096 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7608/2021 genbank_accession OP613908 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7608/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457531 SAMN31353625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7904/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328201 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7904/2021 genbank_accession OP613797 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7904/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457532 SAMN31353626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7905/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328202 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7905/2021 genbank_accession OP613796 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7905/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457533 SAMN31353627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7907/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328203 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7907/2021 genbank_accession OP613795 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7907/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457534 SAMN31353628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7911/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328204 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7911/2021 genbank_accession OP613794 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7911/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457535 SAMN31353629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7912/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328205 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7912/2021 genbank_accession OP613793 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7912/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457536 SAMN31353630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7914/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7914/2021 genbank_accession OP613792 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7914/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457537 SAMN31353631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7917/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328206 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7917/2021 genbank_accession OP613791 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7917/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457538 SAMN31353353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7203/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7203/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7203/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457539 SAMN31353632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7918/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328207 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7918/2021 genbank_accession OP613790 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7918/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457540 SAMN31353633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7919/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328208 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7919/2021 genbank_accession OP613789 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7919/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457541 SAMN31353634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7921/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328209 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7921/2021 genbank_accession OP613788 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7921/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457542 SAMN31353635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7922/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328210 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7922/2021 genbank_accession OP613787 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7922/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457543 SAMN31353636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7924/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328211 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7924/2021 genbank_accession OP613786 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7924/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457544 SAMN31353637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7926/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328212 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7926/2021 genbank_accession OP613785 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7926/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457545 SAMN31353638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7927/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328213 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7927/2021 genbank_accession OP613784 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7927/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457546 SAMN31353639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7930/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328214 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7930/2021 genbank_accession OP613783 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7930/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457547 SAMN31353640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7931/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328215 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7931/2021 genbank_accession OP613782 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7931/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457548 SAMN31353641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7933/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328216 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7933/2021 genbank_accession OP613781 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7933/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457549 SAMN31353354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7204/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327953 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7204/2021 genbank_accession OP614057 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7204/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457550 SAMN31353642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7935/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328217 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7935/2021 genbank_accession OP613780 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7935/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457551 SAMN31353643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7936/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328218 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7936/2021 genbank_accession OP613779 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7936/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457553 SAMN31353644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7942/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328219 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7942/2021 genbank_accession OP613778 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7942/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457554 SAMN31353646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7946/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328221 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7946/2021 genbank_accession OP613776 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7946/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457555 SAMN31353647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7948/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328222 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7948/2021 genbank_accession OP613775 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7948/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457556 SAMN31353648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7950/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328223 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7950/2021 genbank_accession OP613774 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7950/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457557 SAMN31353649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7953/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328224 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7953/2021 genbank_accession OP613773 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7953/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457558 SAMN31353650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7956/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328225 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7956/2021 genbank_accession OP613772 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7956/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457559 SAMN31353651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7958/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328226 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7958/2021 genbank_accession OP613771 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7958/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457560 SAMN31353355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7205/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327954 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7205/2021 genbank_accession OP614056 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7205/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457561 SAMN31353652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7959/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328227 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7959/2021 genbank_accession OP613770 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7959/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457562 SAMN31353653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7961/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328228 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7961/2021 genbank_accession OP613769 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7961/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457563 SAMN31353712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8067 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426592 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8067/2021 genbank_accession ON383569 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8067 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457564 SAMN31353713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8068 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426593 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8068/2021 genbank_accession ON383570 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8068 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457565 SAMN31353714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8070 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426594 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8070/2021 genbank_accession ON383571 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8070 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457566 SAMN31353715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8072 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426595 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8072/2021 genbank_accession ON383572 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8072 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457567 SAMN31353716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8073 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426596 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8073/2021 genbank_accession ON383573 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8073 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457568 SAMN31353717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8077 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426597 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8077/2021 genbank_accession ON383574 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8077 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457569 SAMN31353718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8080 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426598 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8080/2021 genbank_accession ON383575 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8080 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457570 SAMN31353719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8084 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426599 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8084/2021 genbank_accession ON383576 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8084 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457571 SAMN31353720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8085 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426600 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8085/2021 genbank_accession ON383577 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8085 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457552 SAMN31353645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7944/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328220 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7944/2021 genbank_accession OP613777 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7944/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457572 SAMN31353721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8089 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426601 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8089/2021 genbank_accession ON383578 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8089 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457573 SAMN31353326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7155/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327927 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7155/2021 genbank_accession OP614083 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7155/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457574 SAMN31353362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7222/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327961 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7222/2021 genbank_accession OP614049 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7222/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457575 SAMN31353722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8090 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426602 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8090/2021 genbank_accession ON383579 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8090 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457576 SAMN31353723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8096 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426603 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8096/2021 genbank_accession ON383580 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8096 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457577 SAMN31353724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8097 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426604 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8097/2021 genbank_accession ON383581 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8097 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457578 SAMN31353725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8100 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426605 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8100/2021 genbank_accession ON383582 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8100 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457579 SAMN31353726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8106 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426606 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8106/2021 genbank_accession ON383583 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8106 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457580 SAMN31353727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8107 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426607 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8107/2021 genbank_accession ON383584 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8107 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457581 SAMN31353728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8109 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426608 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8109/2021 genbank_accession ON383585 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8109 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457582 SAMN31353729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8122 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426609 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8122/2021 genbank_accession ON383586 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8122 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457583 SAMN31353730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8125 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426610 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8125/2021 genbank_accession ON383587 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8125 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457584 SAMN31353731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8126 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426611 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8126/2021 genbank_accession ON383588 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8126 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457585 SAMN31353363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7223/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7223/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7223/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457586 SAMN31353732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8127 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426612 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8127/2021 genbank_accession ON383589 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8127 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457587 SAMN31353733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8130 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426613 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8130/2021 genbank_accession ON383590 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8130 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457588 SAMN31353734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8132 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426614 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8132/2021 genbank_accession ON383591 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8132 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457589 SAMN31353735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8133 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426615 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8133/2021 genbank_accession ON383592 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8133 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457590 SAMN31353736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8135 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8135/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8135 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457591 SAMN31353737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8140 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426616 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8140/2021 genbank_accession ON383593 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8140 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457592 SAMN31353738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8141 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426617 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8141/2021 genbank_accession ON383594 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8141 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457593 SAMN31353739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8144 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426618 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8144/2021 genbank_accession ON383595 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8144 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457594 SAMN31353740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8159 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426619 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8159/2021 genbank_accession ON383596 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8159 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457595 SAMN31353378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7266/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327976 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7266/2021 genbank_accession OP614034 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7266/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457596 SAMN31353379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7272/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327977 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7272/2021 genbank_accession OP614033 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7272/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457597 SAMN31353380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7273/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327978 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7273/2021 genbank_accession OP614032 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7273/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457598 SAMN31353381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7275/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327979 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7275/2021 genbank_accession OP614031 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7275/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457599 SAMN31353328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7157/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327929 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7157/2021 genbank_accession OP614081 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7157/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457600 SAMN31353382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7278/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7278/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7278/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457601 SAMN31353383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7279/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327980 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7279/2021 genbank_accession OP614030 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7279/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457602 SAMN31353384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7281/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327981 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7281/2021 genbank_accession OP614029 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7281/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457603 SAMN31353385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7286/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327982 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7286/2021 genbank_accession OP614028 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7286/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457604 SAMN31353386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7291/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327983 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7291/2021 genbank_accession OP614027 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7291/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457605 SAMN31353388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7297/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7297/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7297/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457606 SAMN31353387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7293/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327984 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7293/2021 genbank_accession OP614026 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7293/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457607 SAMN31353389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7300/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327985 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7300/2021 genbank_accession OP614025 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7300/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457608 SAMN31353390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7301/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327986 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7301/2021 genbank_accession OP614024 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7301/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457609 SAMN31353329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7158/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327930 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7158/2021 genbank_accession OP614080 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7158/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457610 SAMN31353391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7306/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327987 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7306/2021 genbank_accession OP614023 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7306/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457611 SAMN31353392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7307/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7307/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7307/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457612 SAMN31353393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7308/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327988 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7308/2021 genbank_accession OP614022 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7308/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457613 SAMN31353394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7310/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327989 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7310/2021 genbank_accession OP614021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7310/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457614 SAMN31353395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7311/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327990 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7311/2021 genbank_accession OP614020 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7311/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457615 SAMN31353396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7312/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327991 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7312/2021 genbank_accession OP614019 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7312/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457616 SAMN31353397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7313/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327992 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7313/2021 genbank_accession OP614018 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7313/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457617 SAMN31353399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7319/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327994 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7319/2021 genbank_accession OP614016 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7319/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457618 SAMN31353398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7317/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327993 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7317/2021 genbank_accession OP614017 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7317/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457619 SAMN31353400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7322/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327995 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7322/2021 genbank_accession OP614015 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7322/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457620 SAMN31353401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7326/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327996 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7326/2021 genbank_accession OP614014 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7326/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457621 SAMN31353330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7159/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327931 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7159/2021 genbank_accession OP614079 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7159/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457622 SAMN31353402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7327/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327997 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7327/2021 genbank_accession OP614013 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7327/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457623 SAMN31353403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7328/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327998 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7328/2021 genbank_accession OP614012 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7328/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457624 SAMN31353404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7331/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327999 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7331/2021 genbank_accession OP614011 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7331/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457625 SAMN31353405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7334/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328000 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7334/2021 genbank_accession OP614010 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7334/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457626 SAMN31353406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7335/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328001 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7335/2021 genbank_accession OP614009 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7335/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457627 SAMN31353452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7483/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328043 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7483/2021 genbank_accession OP613964 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7483/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457628 SAMN31353453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7484/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328044 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7484/2021 genbank_accession OP613963 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7484/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457629 SAMN31353454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7489/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328045 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7489/2021 genbank_accession OP613962 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7489/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457630 SAMN31353455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7493/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7493/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7493/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457631 SAMN31353456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7501/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328046 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7501/2021 genbank_accession OP613961 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7501/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457632 SAMN31353457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7506/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328047 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7506/2021 genbank_accession OP613960 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7506/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457633 SAMN31353458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7509/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328048 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7509/2021 genbank_accession OP613959 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7509/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457634 SAMN31353459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7512/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328049 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7512/2021 genbank_accession OP613958 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7512/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457635 SAMN31353460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7513/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328050 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7513/2021 genbank_accession OP613957 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7513/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457636 SAMN31353461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7515/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328051 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7515/2021 genbank_accession OP613956 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7515/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457637 SAMN31353336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7175/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327938 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7175/2021 genbank_accession OP614072 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7175/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457638 SAMN31353462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7519/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328052 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7519/2021 genbank_accession OP613955 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7519/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457639 SAMN31353463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7524/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328053 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7524/2021 genbank_accession OP613954 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7524/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457640 SAMN31353464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7525/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328054 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7525/2021 genbank_accession OP613953 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7525/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457641 SAMN31353465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7526/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7526/2021 genbank_accession OP613952 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7526/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457642 SAMN31353466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7528/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328055 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7528/2021 genbank_accession OP613951 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7528/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457643 SAMN31353467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7533/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328056 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7533/2021 genbank_accession OP613950 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7533/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457644 SAMN31353468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7535/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328057 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7535/2021 genbank_accession OP613949 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7535/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457645 SAMN31353470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7542/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328059 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7542/2021 genbank_accession OP613947 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7542/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457646 SAMN31353469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7540/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328058 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7540/2021 genbank_accession OP613948 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7540/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457647 SAMN31353471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7543/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328060 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7543/2021 genbank_accession OP613946 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7543/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457648 SAMN31353337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7177/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327939 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7177/2021 genbank_accession OP614071 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7177/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457649 SAMN31353472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7546/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328061 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7546/2021 genbank_accession OP613945 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7546/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457650 SAMN31353474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7548/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7548/2021 genbank_accession OP613943 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7548/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457651 SAMN31353473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7547/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328062 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7547/2021 genbank_accession OP613944 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7547/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457652 SAMN31353475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7549/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328063 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7549/2021 genbank_accession OP613942 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7549/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457653 SAMN31353477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7552/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328065 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7552/2021 genbank_accession OP613940 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7552/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457654 SAMN31353476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7551/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328064 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7551/2021 genbank_accession OP613941 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7551/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457655 SAMN31353478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7554/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328066 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7554/2021 genbank_accession OP613939 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7554/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457656 SAMN31353479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7556/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328067 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7556/2021 genbank_accession OP613938 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7556/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457657 SAMN31353480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7557/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328068 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7557/2021 genbank_accession OP613937 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7557/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457658 SAMN31353481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7558/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328069 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7558/2021 genbank_accession OP613936 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7558/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457659 SAMN31353322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7142/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327920 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7142/2021 genbank_accession OP614090 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7142/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457660 SAMN31353323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7143/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327921 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7143/2021 genbank_accession OP614089 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7143/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457661 SAMN31353332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7161/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7161/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7161/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457662 SAMN31353422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-31 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7390/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7390/2021 genbank_accession OP613993 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7390/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457663 SAMN31353568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7728/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328146 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7728/2021 genbank_accession OP613854 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7728/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457664 SAMN31353570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7733/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328148 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7733/2021 genbank_accession OP613852 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7733/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457665 SAMN31353569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7732/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328147 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7732/2021 genbank_accession OP613853 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7732/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457666 SAMN31353571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7734/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328149 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7734/2021 genbank_accession OP613851 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7734/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457667 SAMN31353347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7191/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327947 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7191/2021 genbank_accession OP614063 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7191/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457668 SAMN31353573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7738/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328151 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7738/2021 genbank_accession OP613849 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7738/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457669 SAMN31353572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7735/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328150 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7735/2021 genbank_accession OP613850 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7735/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457670 SAMN31353574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7745/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328152 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7745/2021 genbank_accession OP613848 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7745/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457671 SAMN31353575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7748/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7748/2021 genbank_accession OP613847 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7748/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457672 SAMN31353576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7750/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328153 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7750/2021 genbank_accession OP613846 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7750/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457673 SAMN31353577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7762/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328154 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7762/2021 genbank_accession OP613845 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7762/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457674 SAMN31353578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7772/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328155 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7772/2021 genbank_accession OP613844 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7772/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457675 SAMN31353579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7785/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328156 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7785/2021 genbank_accession OP613843 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7785/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457676 SAMN31353580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7786/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328157 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7786/2021 genbank_accession OP613842 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7786/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457677 SAMN31353581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7790/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328158 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7790/2021 genbank_accession OP613841 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7790/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457678 SAMN31353348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7195/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327948 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7195/2021 genbank_accession OP614062 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7195/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457679 SAMN31353582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7794/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328159 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7794/2021 genbank_accession OP613840 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7794/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457680 SAMN31353583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7795/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328160 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7795/2021 genbank_accession OP613839 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7795/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457681 SAMN31353584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7800/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328161 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7800/2021 genbank_accession OP613838 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7800/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457682 SAMN31353585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7805/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328162 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7805/2021 genbank_accession OP613837 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7805/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457683 SAMN31353586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7806/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328163 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7806/2021 genbank_accession OP613836 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7806/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457684 SAMN31353587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7810/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328164 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7810/2021 genbank_accession OP613835 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7810/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457685 SAMN31353588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7814/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328165 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7814/2021 genbank_accession OP613834 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7814/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457686 SAMN31353589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7815/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7815/2021 genbank_accession OP613833 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7815/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457687 SAMN31353590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7819/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328166 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7819/2021 genbank_accession OP613832 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7819/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457688 SAMN31353591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7820/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328167 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7820/2021 genbank_accession OP613831 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7820/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457689 SAMN31353349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7196/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327949 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7196/2021 genbank_accession OP614061 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7196/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457690 SAMN31353593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7822/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328169 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7822/2021 genbank_accession OP613829 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7822/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457691 SAMN31353592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7821/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328168 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7821/2021 genbank_accession OP613830 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7821/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457692 SAMN31353594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7829/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328170 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7829/2021 genbank_accession OP613828 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7829/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457693 SAMN31353595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7830/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328171 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7830/2021 genbank_accession OP613827 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7830/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457694 SAMN31353596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7834/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328172 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7834/2021 genbank_accession OP613826 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7834/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457695 SAMN31353741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8160 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426620 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8160/2021 genbank_accession ON383597 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8160 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457696 SAMN31353364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7224/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327962 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7224/2021 genbank_accession OP614048 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7224/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457697 SAMN31353742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8163 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426621 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8163/2021 genbank_accession ON383598 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8163 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457698 SAMN31353743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8168 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426622 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8168/2021 genbank_accession ON383599 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8168 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457699 SAMN31353744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8176 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426623 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8176/2021 genbank_accession ON383600 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8176 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457700 SAMN31353745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8177 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426624 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8177/2021 genbank_accession ON383601 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8177 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457701 SAMN31353746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8178 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426625 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8178/2021 genbank_accession ON383602 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8178 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457702 SAMN31353747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8180 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426626 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8180/2021 genbank_accession ON383603 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8180 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457703 SAMN31353748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8184 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426627 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8184/2021 genbank_accession ON383604 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8184 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457704 SAMN31353749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8186 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426628 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8186/2021 genbank_accession ON383605 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8186 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457705 SAMN31353751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8198 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426630 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8198/2021 genbank_accession ON383607 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8198 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457706 SAMN31353750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8191 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426629 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8191/2021 genbank_accession ON383606 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8191 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457707 SAMN31353365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7229/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327963 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7229/2021 genbank_accession OP614047 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7229/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457708 SAMN31353752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8201 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426631 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8201/2021 genbank_accession ON383608 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8201 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457709 SAMN31353753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8202 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426632 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8202/2021 genbank_accession ON383609 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8202 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457710 SAMN31353754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8203 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426633 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8203/2021 genbank_accession ON383610 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8203 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457711 SAMN31353755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8206 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426634 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8206/2021 genbank_accession ON383611 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8206 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457712 SAMN31353756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8209 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426635 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8209/2021 genbank_accession ON383612 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8209 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457713 SAMN31353758 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8214 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426637 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8214/2021 genbank_accession ON383614 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8214 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457714 SAMN31353757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8212 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426636 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8212/2021 genbank_accession ON383613 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8212 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457715 SAMN31353759 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8216 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426638 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8216/2021 genbank_accession ON383615 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8216 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457716 SAMN31353760 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8223 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426639 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8223/2021 genbank_accession ON383616 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8223 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457717 SAMN31353761 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8226 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426640 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8226/2021 genbank_accession ON383617 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8226 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457718 SAMN31353366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7230/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327964 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7230/2021 genbank_accession OP614046 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7230/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457719 SAMN31353762 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8227 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8227/2021 genbank_accession ON383618 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8227 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457720 SAMN31353763 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8230 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426641 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8230/2021 genbank_accession ON383619 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8230 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457722 SAMN31353765 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8246 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426643 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8246/2021 genbank_accession ON383621 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8246 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457723 SAMN31353767 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8263 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8263/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8263 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457721 SAMN31353764 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8238 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426642 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8238/2021 genbank_accession ON383620 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8238 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457724 SAMN31353766 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8262 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426644 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8262/2021 genbank_accession ON383622 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8262 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457725 SAMN31353768 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8265 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426645 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8265/2021 genbank_accession ON383623 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8265 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457726 SAMN31353769 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8267 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426646 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8267/2021 genbank_accession ON383624 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8267 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457727 SAMN31353511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7609/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328097 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7609/2021 genbank_accession OP613907 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7609/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457728 SAMN31353341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7183/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327943 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7183/2021 genbank_accession OP614067 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7183/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457729 SAMN31353513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7618/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328099 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7618/2021 genbank_accession OP613905 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7618/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457730 SAMN31353512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7611/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328098 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7611/2021 genbank_accession OP613906 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7611/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457731 SAMN31353514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7620/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328100 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7620/2021 genbank_accession OP613904 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7620/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457732 SAMN31353515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-29 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7622/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328101 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7622/2021 genbank_accession OP613903 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7622/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457733 SAMN31353516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7625/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328102 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7625/2021 genbank_accession OP613902 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7625/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457734 SAMN31353517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7627/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328103 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7627/2021 genbank_accession OP613901 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7627/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457735 SAMN31353518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7631/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328104 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7631/2021 genbank_accession OP613900 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7631/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457736 SAMN31353519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7633/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328105 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7633/2021 genbank_accession OP613899 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7633/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457737 SAMN31353520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7636/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328106 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7636/2021 genbank_accession OP613898 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7636/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457738 SAMN31353521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7638/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328107 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7638/2021 genbank_accession OP613897 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7638/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457739 SAMN31353324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7151/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327925 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7151/2021 genbank_accession OP614085 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7151/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457740 SAMN31353342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7185/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327944 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7185/2021 genbank_accession OP614066 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7185/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457741 SAMN31353522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7639/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328108 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7639/2021 genbank_accession OP613896 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7639/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457742 SAMN31353523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7640/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328109 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7640/2021 genbank_accession OP613895 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7640/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457743 SAMN31353524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7642/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328110 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7642/2021 genbank_accession OP613894 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7642/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457744 SAMN31353525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7643/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328111 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7643/2021 genbank_accession OP613893 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7643/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457745 SAMN31353526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7644/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328112 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7644/2021 genbank_accession OP613892 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7644/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457746 SAMN31353527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7646/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328113 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7646/2021 genbank_accession OP613891 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7646/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457747 SAMN31353528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7647/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328114 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7647/2021 genbank_accession OP613890 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7647/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457748 SAMN31353529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7648/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328115 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7648/2021 genbank_accession OP613889 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7648/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457749 SAMN31353530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7650/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328116 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7650/2021 genbank_accession OP613888 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7650/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457750 SAMN31353531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-09-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7651/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328117 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7651/2021 genbank_accession OP613887 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7651/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457751 SAMN31353343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7186/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7186/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7186/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457752 SAMN31353532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7652/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328118 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7652/2021 genbank_accession OP613886 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7652/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457753 SAMN31353533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7653/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328119 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7653/2021 genbank_accession OP613885 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7653/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457754 SAMN31353534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7655/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328120 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7655/2021 genbank_accession OP613884 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7655/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457755 SAMN31353535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7656/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328121 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7656/2021 genbank_accession OP613883 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7656/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457756 SAMN31353537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7661/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328123 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7661/2021 genbank_accession OP613881 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7661/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457757 SAMN31353536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7660/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328122 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7660/2021 genbank_accession OP613882 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7660/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457758 SAMN31353538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7663/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328124 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7663/2021 genbank_accession OP613880 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7663/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457759 SAMN31353539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7664/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328125 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7664/2021 genbank_accession OP613879 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7664/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457760 SAMN31353540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7665/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328126 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7665/2021 genbank_accession OP613878 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7665/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457761 SAMN31353541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7666/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328127 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7666/2021 genbank_accession OP613877 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7666/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457762 SAMN31353344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7187/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327945 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7187/2021 genbank_accession OP614065 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7187/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457763 SAMN31353542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7667/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328128 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7667/2021 genbank_accession OP613876 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7667/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457764 SAMN31353543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7669/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328129 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7669/2021 genbank_accession OP613875 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7669/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457765 SAMN31353544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-07 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7672/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7672/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7672/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457766 SAMN31353545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7673/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328130 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7673/2021 genbank_accession OP613874 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7673/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457767 SAMN31353546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7675/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7675/2021 genbank_accession OP613873 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7675/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457768 SAMN31353547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7678/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328131 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7678/2021 genbank_accession OP613872 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7678/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457769 SAMN31353548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7686/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328132 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7686/2021 genbank_accession OP613871 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7686/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457770 SAMN31353549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7688/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7688/2021 genbank_accession OP613870 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7688/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457771 SAMN31353550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7691/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328133 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7691/2021 genbank_accession OP613869 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7691/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457772 SAMN31353551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7694/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328134 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7694/2021 genbank_accession OP613868 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7694/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457773 SAMN31353345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7189/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327946 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7189/2021 genbank_accession OP614064 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7189/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457774 SAMN31353552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7701/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7701/2021 genbank_accession OP613867 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7701/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457775 SAMN31353553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7703/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7703/2021 genbank_accession OP613866 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7703/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457776 SAMN31353554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7706/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7706/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7706/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457777 SAMN31353555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7707/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328135 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7707/2021 genbank_accession OP613865 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7707/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457778 SAMN31353556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7708/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328136 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7708/2021 genbank_accession OP613864 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7708/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457779 SAMN31353557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7709/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328137 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7709/2021 genbank_accession OP613863 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7709/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457780 SAMN31353558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7710/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328138 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7710/2021 genbank_accession OP613862 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7710/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457781 SAMN31353559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7711/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7711/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7711/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457782 SAMN31353560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7712/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328139 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7712/2021 genbank_accession OP613861 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7712/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457783 SAMN31353561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7714/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328140 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7714/2021 genbank_accession OP613860 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7714/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457784 SAMN31353346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7190/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7190/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7190/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457785 SAMN31353562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7715/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328141 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7715/2021 genbank_accession OP613859 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7715/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457786 SAMN31353563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7717/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328142 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7717/2021 genbank_accession OP613858 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7717/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457787 SAMN31353564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7718/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328143 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7718/2021 genbank_accession OP613857 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7718/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457788 SAMN31353565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7721/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328144 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7721/2021 genbank_accession OP613856 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7721/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457789 SAMN31353566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7723/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328145 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7723/2021 genbank_accession OP613855 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7723/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457790 SAMN31353567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-10-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7724/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7724/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7724/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457791 SAMN31353597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7840/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328173 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7840/2021 genbank_accession OP613825 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7840/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457792 SAMN31353598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7847/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328174 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7847/2021 genbank_accession OP613824 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7847/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457793 SAMN31353599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7848/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328175 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7848/2021 genbank_accession OP613823 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7848/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457794 SAMN31353600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7851/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328176 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7851/2021 genbank_accession OP613822 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7851/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457795 SAMN31353601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7853/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328177 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7853/2021 genbank_accession OP613821 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7853/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457796 SAMN31353350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7197/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327950 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7197/2021 genbank_accession OP614060 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7197/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457797 SAMN31353602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7859/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328178 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7859/2021 genbank_accession OP613820 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7859/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457798 SAMN31353603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7860/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328179 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7860/2021 genbank_accession OP613819 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7860/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457799 SAMN31353604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7862/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328180 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7862/2021 genbank_accession OP613818 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7862/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457800 SAMN31353605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7863/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328181 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7863/2021 genbank_accession OP613817 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7863/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457801 SAMN31353606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-27 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7864/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328182 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7864/2021 genbank_accession OP613816 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7864/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457802 SAMN31353607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7869/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328183 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7869/2021 genbank_accession OP613815 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7869/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457803 SAMN31353608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7871/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328184 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7871/2021 genbank_accession OP613814 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7871/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457804 SAMN31353610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7875/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328186 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7875/2021 genbank_accession OP613812 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7875/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457805 SAMN31353609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-23 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7872/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328185 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7872/2021 genbank_accession OP613813 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7872/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457806 SAMN31353611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7876/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328187 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7876/2021 genbank_accession OP613811 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7876/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457807 SAMN31353351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7198/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327951 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7198/2021 genbank_accession OP614059 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7198/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457808 SAMN31353613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7878/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328189 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7878/2021 genbank_accession OP613809 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7878/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457809 SAMN31353612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-29 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7877/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328188 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7877/2021 genbank_accession OP613810 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7877/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457810 SAMN31353614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7879/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328190 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7879/2021 genbank_accession OP613808 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7879/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457811 SAMN31353615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7880/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328191 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7880/2021 genbank_accession OP613807 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7880/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457812 SAMN31353616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-30 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7882/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328192 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7882/2021 genbank_accession OP613806 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7882/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457813 SAMN31353617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-11-28 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7883/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328193 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7883/2021 genbank_accession OP613805 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7883/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457814 SAMN31353619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-02 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7890/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328195 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7890/2021 genbank_accession OP613803 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7890/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457815 SAMN31353618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7889/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328194 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7889/2021 genbank_accession OP613804 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7889/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457816 SAMN31353620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-01 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7895/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328196 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7895/2021 genbank_accession OP613802 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7895/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457817 SAMN31353621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7897/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328197 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7897/2021 genbank_accession OP613801 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7897/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457818 SAMN31353325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7153/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327926 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7153/2021 genbank_accession OP614084 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7153/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457819 SAMN31353352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7199/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327952 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7199/2021 genbank_accession OP614058 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7199/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457820 SAMN31353622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7900/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328198 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7900/2021 genbank_accession OP613800 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7900/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457821 SAMN31353623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7902/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328199 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7902/2021 genbank_accession OP613799 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7902/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457822 SAMN31353624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7903/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328200 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7903/2021 genbank_accession OP613798 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7903/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457823 SAMN31353654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7962/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328229 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7962/2021 genbank_accession OP613768 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7962/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457824 SAMN31353655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7963/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328230 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7963/2021 genbank_accession OP613767 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7963/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457825 SAMN31353656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7965/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328231 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7965/2021 genbank_accession OP613766 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7965/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457826 SAMN31353657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7966/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328232 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7966/2021 genbank_accession OP613765 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7966/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457827 SAMN31353658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7968/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7968/2021 genbank_accession OP613764 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7968/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457828 SAMN31353659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7969/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328233 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7969/2021 genbank_accession OP613763 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7969/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457829 SAMN31353660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7970/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328234 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7970/2021 genbank_accession OP613762 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7970/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457830 SAMN31353356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7206/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327955 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7206/2021 genbank_accession OP614055 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7206/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457831 SAMN31353661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7972/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328235 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7972/2021 genbank_accession OP613761 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7972/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457832 SAMN31353663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7975/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328237 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7975/2021 genbank_accession OP613759 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7975/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457833 SAMN31353662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7973/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328236 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7973/2021 genbank_accession OP613760 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7973/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457834 SAMN31353664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7978/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328238 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7978/2021 genbank_accession OP613758 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7978/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457835 SAMN31353665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7979/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328239 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7979/2021 genbank_accession OP613757 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7979/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457836 SAMN31353666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7980/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328240 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7980/2021 genbank_accession OP613756 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7980/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457837 SAMN31353667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7981/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328241 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7981/2021 genbank_accession OP613755 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7981/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457838 SAMN31353668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7982/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328242 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7982/2021 genbank_accession OP613754 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7982/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457839 SAMN31353669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7983/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328243 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7983/2021 genbank_accession OP613753 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7983/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457840 SAMN31353670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7985/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328244 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7985/2021 genbank_accession OP613752 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7985/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457841 SAMN31353671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7986/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328245 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7986/2021 genbank_accession OP613751 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7986/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457842 SAMN31353357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7208/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327956 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7208/2021 genbank_accession OP614054 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7208/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457843 SAMN31353672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7987/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328246 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7987/2021 genbank_accession OP613750 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7987/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457844 SAMN31353673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7988/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328247 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7988/2021 genbank_accession OP613749 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7988/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457845 SAMN31353674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7989/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328248 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7989/2021 genbank_accession OP613748 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7989/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457846 SAMN31353675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7993/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328249 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7993/2021 genbank_accession OP613747 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7993/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457847 SAMN31353676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7994/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328250 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7994/2021 genbank_accession OP613746 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7994/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457848 SAMN31353678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7998/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328252 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7998/2021 genbank_accession OP613744 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7998/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457849 SAMN31353677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-05 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7996/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328251 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7996/2021 genbank_accession OP613745 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7996/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457850 SAMN31353679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8002 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426560 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8002/2021 genbank_accession ON383537 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8002 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457851 SAMN31353680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8007 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426561 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8007/2021 genbank_accession ON383538 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8007 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457852 SAMN31353681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8011 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426562 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8011/2021 genbank_accession ON383539 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8011 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457853 SAMN31353358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7209/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327957 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7209/2021 genbank_accession OP614053 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7209/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457854 SAMN31353682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8012 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426563 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8012/2021 genbank_accession ON383540 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8012 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457855 SAMN31353683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8014 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426564 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8014/2021 genbank_accession ON383541 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8014 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457856 SAMN31353684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8015 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426565 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8015/2021 genbank_accession ON383542 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8015 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457857 SAMN31353685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8017 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426566 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8017/2021 genbank_accession ON383543 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8017 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457858 SAMN31353686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8020 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426567 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8020/2021 genbank_accession ON383544 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8020 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457859 SAMN31353687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426568 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8021/2021 genbank_accession ON383545 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457860 SAMN31353688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8024 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426569 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8024/2021 genbank_accession ON383546 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8024 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457861 SAMN31353689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8026 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426570 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8026/2021 genbank_accession ON383547 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8026 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457862 SAMN31353690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8028 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426571 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8028/2021 genbank_accession ON383548 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8028 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457863 SAMN31353691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8029 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8029/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8029 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457864 SAMN31353359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-06 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7215/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327958 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7215/2021 genbank_accession OP614052 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7215/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457865 SAMN31353692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8030 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426572 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8030/2021 genbank_accession ON383549 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8030 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457866 SAMN31353693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8031 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426573 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8031/2021 genbank_accession ON383550 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8031 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457867 SAMN31353694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8032 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426574 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8032/2021 genbank_accession ON383551 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8032 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457868 SAMN31353695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8035 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426575 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8035/2021 genbank_accession ON383552 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8035 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457869 SAMN31353696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8036 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426576 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8036/2021 genbank_accession ON383553 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8036 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457870 SAMN31353697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8037 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426577 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8037/2021 genbank_accession ON383554 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8037 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457871 SAMN31353698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-08 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8040 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426578 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8040/2021 genbank_accession ON383555 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8040 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457872 SAMN31353699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8041 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426579 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8041/2021 genbank_accession ON383556 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8041 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457873 SAMN31353700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8042 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426580 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8042/2021 genbank_accession ON383557 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8042 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457874 SAMN31353701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8043 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426581 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8043/2021 genbank_accession ON383558 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8043 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457875 SAMN31353360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7218/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327959 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7218/2021 genbank_accession OP614051 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7218/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457876 SAMN31353703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8046 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426583 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8046/2021 genbank_accession ON383560 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8046 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457877 SAMN31353702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-09 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8044 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426582 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8044/2021 genbank_accession ON383559 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8044 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457878 SAMN31353704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8049 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426584 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8049/2021 genbank_accession ON383561 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8049 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457879 SAMN31353706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8054 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426586 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8054/2021 genbank_accession ON383563 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8054 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457880 SAMN31353705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-15 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8052 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426585 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8052/2021 genbank_accession ON383562 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8052 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457881 SAMN31353707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8055 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426587 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8055/2021 genbank_accession ON383564 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8055 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457882 SAMN31353708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8056 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426588 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8056/2021 genbank_accession ON383565 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8056 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457883 SAMN31353709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8057 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426589 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8057/2021 genbank_accession ON383566 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8057 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457884 SAMN31353710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8062 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426590 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8062/2021 genbank_accession ON383567 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8062 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457885 SAMN31353711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8066 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426591 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8066/2021 genbank_accession ON383568 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8066 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457886 SAMN31353361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7220/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7220/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7220/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457887 SAMN31353770 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8270 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426647 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8270/2021 genbank_accession ON383625 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8270 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457888 SAMN31353771 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8271 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426648 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8271/2021 genbank_accession ON383626 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8271 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457889 SAMN31353367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7231/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327965 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7231/2021 genbank_accession OP614045 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7231/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457890 SAMN31353772 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8273 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426649 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8273/2021 genbank_accession ON383627 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8273 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457891 SAMN31353773 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8276 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426650 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8276/2021 genbank_accession ON383628 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8276 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457892 SAMN31353775 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8279 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426652 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8279/2021 genbank_accession ON383630 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8279 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457893 SAMN31353774 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8277 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426651 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8277/2021 genbank_accession ON383629 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8277 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457894 SAMN31353777 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8281 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426654 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8281/2021 genbank_accession ON383632 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8281 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457895 SAMN31353776 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8280 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426653 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8280/2021 genbank_accession ON383631 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8280 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457896 SAMN31353778 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8284 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8284/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8284 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457897 SAMN31353779 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8285 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426655 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8285/2021 genbank_accession ON383633 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8285 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457898 SAMN31353780 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8286 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426656 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8286/2021 genbank_accession ON383634 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8286 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457899 SAMN31353781 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8289 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426657 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8289/2021 genbank_accession ON383635 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8289 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457900 SAMN31353368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-11 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7233/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327966 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7233/2021 genbank_accession OP614044 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7233/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457901 SAMN31353782 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8292 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426658 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8292/2021 genbank_accession ON383636 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8292 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457902 SAMN31353783 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8294 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426659 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8294/2021 genbank_accession ON383637 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8294 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457903 SAMN31353784 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8304 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426660 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8304/2021 genbank_accession ON383638 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8304 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457904 SAMN31353785 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8313 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426661 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8313/2021 genbank_accession ON383639 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8313 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457905 SAMN31353786 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8315 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426662 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8315/2021 genbank_accession ON383640 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8315 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457906 SAMN31353787 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8316 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426663 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8316/2021 genbank_accession ON383641 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8316 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457907 SAMN31353788 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8317 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426664 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8317/2021 genbank_accession ON383642 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8317 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457908 SAMN31353789 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8325 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426665 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8325/2021 genbank_accession ON383643 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8325 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457909 SAMN31353790 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8326 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426666 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8326/2021 genbank_accession ON383644 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8326 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457910 SAMN31353791 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8328 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426667 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8328/2021 genbank_accession ON383645 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8328 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457911 SAMN31353369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-12 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7234/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327967 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7234/2021 genbank_accession OP614043 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7234/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457912 SAMN31353792 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8331 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426668 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8331/2021 genbank_accession ON383646 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8331 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457913 SAMN31353793 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8333 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426669 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8333/2021 genbank_accession ON383647 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8333 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457914 SAMN31353794 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8335 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426670 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8335/2021 genbank_accession ON383648 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8335 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457915 SAMN31353795 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8337 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426671 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8337/2021 genbank_accession ON383649 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8337 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457916 SAMN31353796 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8339 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426672 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8339/2021 genbank_accession ON383650 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8339 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457917 SAMN31353797 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-18 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8341 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426673 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8341/2021 genbank_accession ON383651 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8341 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457918 SAMN31353798 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8344 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426674 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8344/2021 genbank_accession ON383652 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8344 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457919 SAMN31353800 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8351 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426676 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8351/2021 genbank_accession ON383654 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8351 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457920 SAMN31353799 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-19 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8347 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426675 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8347/2021 genbank_accession ON383653 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8347 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457921 SAMN31353801 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8353 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426677 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8353/2021 genbank_accession ON383655 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8353 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457922 SAMN31353370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7242/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327968 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7242/2021 genbank_accession OP614042 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7242/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457923 SAMN31353802 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8430 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426678 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8430/2021 genbank_accession ON383656 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8430 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457924 SAMN31353803 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8465 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426679 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8465/2021 genbank_accession ON383657 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8465 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457925 SAMN31353804 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-17 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8473 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426680 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8473/2021 genbank_accession ON383658 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8473 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457926 SAMN31353805 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8489 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426681 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8489/2021 genbank_accession ON383659 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8489 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457927 SAMN31353807 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8513 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426683 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8513/2021 genbank_accession ON383661 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8513 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457928 SAMN31353806 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-20 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8507 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426682 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8507/2021 genbank_accession ON383660 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8507 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457929 SAMN31353808 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8645 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426684 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8645/2021 genbank_accession ON383662 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8645 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457930 SAMN31353809 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8647 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426685 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8647/2021 genbank_accession ON383663 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8647 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457931 SAMN31353810 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8649 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426686 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8649/2021 genbank_accession ON383664 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8649 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457932 SAMN31353371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7245/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327969 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7245/2021 genbank_accession OP614041 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7245/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457933 SAMN31353811 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8650 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426687 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8650/2021 genbank_accession ON383665 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8650 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457934 SAMN31353812 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8653 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8653/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8653 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457935 SAMN31353813 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8655 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426688 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8655/2021 genbank_accession ON383666 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8655 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457936 SAMN31353814 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8656 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426689 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8656/2021 genbank_accession ON383667 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8656 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457937 SAMN31353816 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8661 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426691 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8661/2021 genbank_accession ON383669 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8661 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457938 SAMN31353815 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8660 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426690 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8660/2021 genbank_accession ON383668 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8660 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457939 SAMN31353817 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8663 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426692 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8663/2021 genbank_accession ON383670 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8663 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457940 SAMN31353818 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8667 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8667/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8667 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457941 SAMN31353819 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-22 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8670 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426693 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8670/2021 genbank_accession ON383671 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8670 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457942 SAMN31353820 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8671 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_12426694 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8671/2021 genbank_accession ON383672 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8671 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457943 SAMN31353821 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-12-21 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-8673 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-8673/2021 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-8673 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457944 SAMN31353327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-04 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7156/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327928 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7156/2021 genbank_accession OP614082 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7156/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457945 SAMN31353372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7249/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327970 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7249/2021 genbank_accession OP614040 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7249/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457946 SAMN31353373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7253/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327971 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7253/2021 genbank_accession OP614039 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7253/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457947 SAMN31353375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7259/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327973 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7259/2021 genbank_accession OP614037 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7259/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457949 SAMN31353376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7260/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327974 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7260/2021 genbank_accession OP614036 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7260/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457950 SAMN31353377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7265/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327975 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7265/2021 genbank_accession OP614035 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7265/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457951 SAMN31353408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7337/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328003 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7337/2021 genbank_accession OP614007 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7337/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457952 SAMN31353407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-13 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7336/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328002 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7336/2021 genbank_accession OP614008 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7336/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457954 SAMN31353411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7342/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328006 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7342/2021 genbank_accession OP614004 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7342/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457955 SAMN31353410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7341/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328005 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7341/2021 genbank_accession OP614005 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7341/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457956 SAMN31353331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-03 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7160/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327932 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7160/2021 genbank_accession OP614078 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7160/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457957 SAMN31353412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-10 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7344/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328007 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7344/2021 genbank_accession OP614003 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7344/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457958 SAMN31353414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7348/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328009 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7348/2021 genbank_accession OP614001 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7348/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457959 SAMN31353413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7347/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328008 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7347/2021 genbank_accession OP614002 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7347/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457960 SAMN31353415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-26 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7349/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328010 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7349/2021 genbank_accession OP614000 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7349/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457961 SAMN31353416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-25 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7352/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328011 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7352/2021 genbank_accession OP613999 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7352/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457962 SAMN31353417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-24 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7353/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328012 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7353/2021 genbank_accession OP613998 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7353/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457948 SAMN31353374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-16 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7254/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15327972 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7254/2021 genbank_accession OP614038 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7254/2021 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15457953 SAMN31353409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 751551 PRJNA751551 collected_by Clinical Microbiology Laboratory, NewYork Presbyterian Hospital/Columbia University Irving Medical Center collection_date 2021-08-14 geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 [MONDO:0100096] isolate SARS-CoV-2/human/USA/NY-CUIMC-NP-7338/2021 isolation_source clinical collection_device Swab [GENEPIO:0100027] collection_method Swabbing [GENEPIO:0002117] purpose_of_sampling Surveillance [GENEPIO:0100004] purpose_of_sequencing Baseline surveillance (random sampling) [GENEPIO:0100005] sequenced_by Uhlemann Laboratory, Columbia University Irving Medical Center gisaid_accession EPI_ISL_15328004 gisaid_virus_name hCoV-19/USA/NY-CUIMC-NP-7338/2021 genbank_accession OP614006 genbank_virus_name SARS-CoV-2/human/USA/NY-CUIMC-NP-7338/2021 BioSampleModel SARS-CoV-2: clinical or host-associated