CDC Sars CoV2 Sequencing Baseline Constellation

SRS15463149 SAMN31332959 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898633/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.547 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463171 SAMN31332278 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898692/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463170 SAMN31332951 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898691/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463169 SAMN31332952 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898686/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463168 SAMN31332953 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898685/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463167 SAMN31331997 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898684/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463166 SAMN31331998 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898678/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463165 SAMN31331999 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898676/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463164 SAMN31332279 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898675/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.126 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463163 SAMN31332280 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898671/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.815 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.538 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463162 SAMN31332281 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898668/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.849 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463150 SAMN31332284 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898635/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.362 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463151 SAMN31333428 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898639/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.841 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.532 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463152 SAMN31332283 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898640/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.788 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463153 SAMN31332000 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898644/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.585 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.668 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463154 SAMN31332958 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898646/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.366 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463155 SAMN31332282 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898651/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463156 SAMN31332957 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898652/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463157 SAMN31333140 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0898654/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463158 SAMN31333427 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898658/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463159 SAMN31332956 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898660/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463160 SAMN31332955 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898665/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.742 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463161 SAMN31332954 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898666/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.945 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463172 SAMN31332050 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898695/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463173 SAMN31333426 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898697/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463174 SAMN31331996 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898698/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463175 SAMN31332950 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898699/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463176 SAMN31333425 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898702/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463177 SAMN31331995 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898704/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463178 SAMN31332949 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898705/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463179 SAMN31332277 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898707/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.159 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463180 SAMN31332049 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898708/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.410 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463181 SAMN31332948 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898709/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.048 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463182 SAMN31332946 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898713/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.037 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463183 SAMN31332947 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898711/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.864 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463184 SAMN31332048 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898716/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.129 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463185 SAMN31332047 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898718/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463186 SAMN31332046 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898719/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.689 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463187 SAMN31332276 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898720/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.633 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463188 SAMN31332275 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898721/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.679 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463189 SAMN31333424 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898722/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.410 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463190 SAMN31332274 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898723/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.150 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463191 SAMN31332273 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898727/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.682 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463192 SAMN31331994 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898725/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.285 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463193 SAMN31331993 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898728/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.315 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463194 SAMN31333024 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898729/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.427 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463195 SAMN31332945 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898731/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.792 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463196 SAMN31332944 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898732/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.593 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463197 SAMN31332943 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898735/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.841 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463198 SAMN31332942 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898737/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.560 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463199 SAMN31332941 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898739/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.325 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463200 SAMN31332940 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898742/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.963 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463201 SAMN31332272 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898743/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.143 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463202 SAMN31332939 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898744/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.155 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.431 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463203 SAMN31333423 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898748/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.391 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463204 SAMN31332938 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898750/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.260 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463205 SAMN31333422 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898751/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.969 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463206 SAMN31332937 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898753/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.134 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463207 SAMN31332936 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898758/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.966 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463208 SAMN31333421 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898757/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.043 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.698 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.198 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463209 SAMN31332271 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898759/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.135 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463210 SAMN31332253 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898812/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.095 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.185 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463211 SAMN31332270 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898760/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.912 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463212 SAMN31332252 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898814/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.083 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463213 SAMN31332251 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898816/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.666 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463214 SAMN31332250 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898817/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.144 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463215 SAMN31332249 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898818/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.034 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463216 SAMN31332248 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898820/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.268 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463217 SAMN31332920 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898824/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.190 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463218 SAMN31332045 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898825/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.152 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463219 SAMN31332919 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898827/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.903 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463221 SAMN31331992 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898829/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.808 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463222 SAMN31332247 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898830/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.848 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463223 SAMN31332246 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898831/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.139 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.016 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463224 SAMN31332245 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898832/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.209 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463225 SAMN31332244 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898833/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.92 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.041 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463226 SAMN31332243 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898834/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.524 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463227 SAMN31332242 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898836/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.535 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463228 SAMN31332241 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898837/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 12.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.236 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463229 SAMN31332240 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898838/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.511 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463230 SAMN31333420 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898839/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.276 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463231 SAMN31332239 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898840/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.700 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463232 SAMN31333023 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898843/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.994 lineage/clade name BF.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463220 SAMN31332044 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898828/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.23 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.981 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463233 SAMN31332238 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898841/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.781 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463234 SAMN31332918 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898844/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.160 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463235 SAMN31332917 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898846/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.338 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463236 SAMN31332237 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898847/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.788 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.510 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463237 SAMN31331991 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898849/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.125 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463238 SAMN31333022 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898852/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.922 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463239 SAMN31333021 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898853/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.441 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463240 SAMN31333419 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898856/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463241 SAMN31333418 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898858/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463242 SAMN31333139 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0898859/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463243 SAMN31333413 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898925/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463244 SAMN31331988 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898927/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463245 SAMN31333412 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898928/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463246 SAMN31333411 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898931/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463247 SAMN31333410 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898932/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463248 SAMN31331987 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898933/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BU.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463249 SAMN31333409 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898936/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463250 SAMN31331986 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898938/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463251 SAMN31332899 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898940/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463252 SAMN31331985 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898943/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.224 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.802 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463253 SAMN31331984 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898944/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.678 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463254 SAMN31333408 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898945/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.701 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463255 SAMN31331983 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898946/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.503 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463256 SAMN31333407 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898948/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.156 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463257 SAMN31331982 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898949/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.856 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463258 SAMN31331981 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898950/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.759 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463259 SAMN31331980 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898952/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.524 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463260 SAMN31332898 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898954/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.424 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463261 SAMN31332897 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898955/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.713 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463262 SAMN31332896 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898956/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.546 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.895 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463263 SAMN31332895 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898959/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.037 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463264 SAMN31332894 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898960/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.759 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463265 SAMN31332229 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898963/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.477 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463266 SAMN31332893 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898964/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.928 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463267 SAMN31332892 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898965/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.872 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463268 SAMN31332891 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898966/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.340 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463269 SAMN31332890 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898970/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.324 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463270 SAMN31332889 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898972/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.501 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463271 SAMN31332888 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898974/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.934 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.045 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463272 SAMN31333148 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0898981/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.086 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463273 SAMN31332887 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898982/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.533 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463274 SAMN31332886 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898984/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.414 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463275 SAMN31333017 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0899763/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.101 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.515 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.782 lineage/clade name CF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463276 SAMN31333373 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899764/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.592 lineage/clade name CA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463277 SAMN31333372 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899765/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.050 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463278 SAMN31332136 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899766/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.670 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463279 SAMN31332135 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899767/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.402 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463280 SAMN31332033 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899768/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.882 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463281 SAMN31332814 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899769/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.532 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.746 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.533 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463282 SAMN31332134 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899770/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.360 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463283 SAMN31332133 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899771/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.236 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463284 SAMN31332132 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899772/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.390 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463285 SAMN31332131 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899773/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.746 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463286 SAMN31332813 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899774/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.943 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463287 SAMN31332812 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899775/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.213 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463288 SAMN31332811 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899776/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.453 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463289 SAMN31332810 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899777/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.461 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.948 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463290 SAMN31332809 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899778/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.788 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463291 SAMN31332808 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899780/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.520 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463292 SAMN31332807 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899781/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.217 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.709 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463293 SAMN31333143 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0899782/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.103 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463294 SAMN31332806 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899783/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.868 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463295 SAMN31332805 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899784/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.25 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.096 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463296 SAMN31332804 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899785/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.648 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463297 SAMN31332803 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899786/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.790 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463298 SAMN31332802 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899787/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.330 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463299 SAMN31332801 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899788/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.380 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463300 SAMN31332800 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899789/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.59 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.714 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463301 SAMN31332799 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899790/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.583 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463302 SAMN31332798 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899791/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.710 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463303 SAMN31332797 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899792/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.989 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463304 SAMN31332796 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899793/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.784 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.088 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463305 SAMN31332795 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899794/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.024 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463306 SAMN31332794 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899795/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.579 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463307 SAMN31333189 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900154/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.836 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463308 SAMN31333188 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900155/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.281 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463309 SAMN31333187 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900156/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.577 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463310 SAMN31333186 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900157/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.033 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463311 SAMN31333185 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900158/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.013 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463312 SAMN31333256 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900159/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.727 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463313 SAMN31333184 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900161/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.765 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.005 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463314 SAMN31333325 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900162/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.422 lineage/clade name BA.5.2.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463315 SAMN31332030 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900164/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.798 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463317 SAMN31333116 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900166/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.989 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463318 SAMN31331807 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900168/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.466 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.998 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463319 SAMN31331806 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900169/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.095 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463320 SAMN31333254 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900171/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.837 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463321 SAMN31332112 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900172/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463322 SAMN31332029 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900173/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.012 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463323 SAMN31333183 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900174/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.638 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463324 SAMN31331805 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900175/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.115 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.592 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463325 SAMN31333182 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900176/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.593 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463326 SAMN31333094 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900177/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.718 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.871 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463327 SAMN31333093 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900178/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.599 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463328 SAMN31333181 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900180/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.813 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463316 SAMN31333255 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900165/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.172 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.681 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463329 SAMN31331804 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900182/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.556 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.142 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463330 SAMN31333324 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900187/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.152 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.310 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463331 SAMN31333180 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900188/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.023 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463332 SAMN31331803 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900189/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.366 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463333 SAMN31333323 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900190/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.953 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463334 SAMN31332111 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900192/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.954 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463335 SAMN31333092 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900191/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.017 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463336 SAMN31333179 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900194/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.374 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.456 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463337 SAMN31333115 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900195/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.958 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463338 SAMN31333253 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900200/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.963 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463339 SAMN31333358 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900563/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463340 SAMN31331899 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900564/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463341 SAMN31332080 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900568/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463342 SAMN31331898 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900571/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463343 SAMN31332079 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900572/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463344 SAMN31331897 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900574/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463345 SAMN31332078 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900575/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463346 SAMN31332077 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900577/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463347 SAMN31331896 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900582/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463348 SAMN31333357 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900583/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463349 SAMN31331895 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900584/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463350 SAMN31331894 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900586/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463351 SAMN31331893 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900588/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463352 SAMN31331892 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900589/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463353 SAMN31331891 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900592/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463354 SAMN31331890 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900595/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463355 SAMN31331889 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900598/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463356 SAMN31331888 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900599/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463357 SAMN31331887 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900601/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463358 SAMN31332076 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900600/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463359 SAMN31331970 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SD-CDC-LC0900602/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463360 SAMN31331886 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900603/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463361 SAMN31333722 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0900604/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463362 SAMN31331885 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900606/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463363 SAMN31331884 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900607/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463364 SAMN31331883 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900610/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463365 SAMN31331882 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900611/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463366 SAMN31331881 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900614/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463367 SAMN31331880 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900616/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463368 SAMN31331879 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900617/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463369 SAMN31333356 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900619/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463370 SAMN31331878 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900618/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463371 SAMN31331945 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0901086/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.920 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463372 SAMN31332761 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901087/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.904 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463373 SAMN31333705 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901088/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.937 lineage/clade name BA.5.2.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463374 SAMN31332760 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901089/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.591 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463375 SAMN31332759 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901090/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.454 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463376 SAMN31332758 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901091/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.814 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463377 SAMN31332774 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901093/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.739 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463378 SAMN31333704 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901096/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.566 lineage/clade name BF.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463379 SAMN31333703 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901097/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.674 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463380 SAMN31333702 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901099/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.593 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463381 SAMN31333701 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901100/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.026 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463382 SAMN31333699 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901102/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.591 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463383 SAMN31333700 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901101/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.284 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.419 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463384 SAMN31333361 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0901104/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.929 lineage/clade name BF.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463385 SAMN31333360 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0901106/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.925 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.430 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463386 SAMN31333265 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0901107/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.221 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463387 SAMN31333204 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901108/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.013 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463388 SAMN31333203 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901109/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.249 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.376 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463389 SAMN31333202 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901110/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.324 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463390 SAMN31333371 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0901112/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.449 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463391 SAMN31333201 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901114/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.609 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.158 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463392 SAMN31331964 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901118/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.597 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463393 SAMN31333698 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901119/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.821 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463394 SAMN31333697 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901121/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.465 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463395 SAMN31333452 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901122/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.571 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463396 SAMN31332773 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901123/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.650 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463397 SAMN31333104 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0901124/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.034 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463398 SAMN31333451 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901125/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.831 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.821 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463399 SAMN31332089 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0901126/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.663 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463400 SAMN31332772 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901130/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.770 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463401 SAMN31332771 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901131/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.055 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463402 SAMN31332770 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901135/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.382 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463403 SAMN31332096 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900436/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.956 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463404 SAMN31333235 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900438/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.772 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.364 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463405 SAMN31331797 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900439/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.896 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.762 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463406 SAMN31333085 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900440/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.758 lineage/clade name BA.5.2.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463407 SAMN31333234 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900441/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.137 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463408 SAMN31333233 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900442/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.969 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463409 SAMN31332095 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900443/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.351 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463410 SAMN31333290 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900444/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.725 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463411 SAMN31332022 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900446/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.138 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463412 SAMN31333232 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900447/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.471 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463413 SAMN31333084 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900448/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.278 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463414 SAMN31333231 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900449/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.635 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.543 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463415 SAMN31333230 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900450/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.331 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.465 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463416 SAMN31331796 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900453/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.317 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463417 SAMN31333229 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900456/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463418 SAMN31333228 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900458/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.282 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463419 SAMN31333159 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900459/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.213 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463420 SAMN31333227 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900460/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.178 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.573 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463421 SAMN31332021 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900461/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.662 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463422 SAMN31333289 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900462/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.381 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463423 SAMN31332094 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900465/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.010 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463424 SAMN31331795 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900466/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.553 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463425 SAMN31333158 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900467/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.038 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463426 SAMN31333157 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900468/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.716 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463427 SAMN31333288 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900470/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.781 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.313 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463428 SAMN31331794 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900471/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.418 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463429 SAMN31331793 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900472/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.933 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.378 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463430 SAMN31332020 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900474/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.231 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463431 SAMN31333604 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900476/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.247 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463432 SAMN31333603 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900477/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.877 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463433 SAMN31333602 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900478/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.907 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463434 SAMN31333601 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900480/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.885 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463435 SAMN31333102 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0901252/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.53 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.679 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463436 SAMN31333684 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901253/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.079 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463437 SAMN31333683 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901254/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.189 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.844 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463438 SAMN31331956 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901256/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.94 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.719 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463439 SAMN31331955 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901257/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.094 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463440 SAMN31333101 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0901258/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.412 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463441 SAMN31333100 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0901259/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.852 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463442 SAMN31331953 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901261/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.660 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463443 SAMN31331954 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901260/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.304 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463444 SAMN31332086 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0901262/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.437 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463445 SAMN31331942 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0901264/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.340 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463446 SAMN31331952 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901269/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.057 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463447 SAMN31333682 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901268/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.223 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463448 SAMN31331951 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901271/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.911 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463449 SAMN31331950 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901274/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.979 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463450 SAMN31333717 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0901278/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.151 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463451 SAMN31333681 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901280/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.751 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463452 SAMN31332752 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901281/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.656 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463453 SAMN31333680 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901282/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.222 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463454 SAMN31333679 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901283/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.878 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463455 SAMN31333678 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901284/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.603 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463456 SAMN31333677 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901285/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.115 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463457 SAMN31333676 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901286/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.137 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463458 SAMN31333675 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901287/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.905 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463459 SAMN31333674 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901290/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.726 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463460 SAMN31333673 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901292/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.785 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.604 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463461 SAMN31333672 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901296/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.489 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.432 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463462 SAMN31333445 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901295/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.502 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463463 SAMN31333494 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901297/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.035 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463464 SAMN31331852 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0901298/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.346 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463465 SAMN31333198 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901299/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.951 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463466 SAMN31331949 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901300/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.235 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463467 SAMN31332269 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898761/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.689 lineage/clade name BF.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463468 SAMN31332268 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898763/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.014 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463469 SAMN31332935 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898764/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.743 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463470 SAMN31332934 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898765/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.964 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463471 SAMN31332267 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898766/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.32 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.032 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463472 SAMN31332933 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898767/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.415 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463473 SAMN31332266 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898772/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.445 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463474 SAMN31332932 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898773/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.219 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463475 SAMN31332931 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898774/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.698 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463476 SAMN31332265 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898775/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.906 lineage/clade name BF.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463477 SAMN31332264 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898776/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.417 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463478 SAMN31332930 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898777/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.724 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463479 SAMN31332929 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898778/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.190 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463480 SAMN31333351 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0898780/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.351 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463481 SAMN31332928 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898783/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.412 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463482 SAMN31332927 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898789/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.453 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463483 SAMN31332263 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898790/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.655 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463484 SAMN31332262 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898791/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.861 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463485 SAMN31331912 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900505/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463486 SAMN31332082 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900506/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463487 SAMN31331911 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900508/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463488 SAMN31331910 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900514/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463489 SAMN31331909 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900520/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463490 SAMN31331907 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900522/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463491 SAMN31331908 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900521/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463492 SAMN31333359 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900529/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463493 SAMN31331906 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900537/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463494 SAMN31331905 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900538/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463495 SAMN31331904 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900544/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463496 SAMN31331903 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900546/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463497 SAMN31331902 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900553/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463498 SAMN31331901 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900560/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463499 SAMN31332081 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900561/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463500 SAMN31331900 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900562/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463501 SAMN31333081 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900748/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.945 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463502 SAMN31333206 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0900751/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.131 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463503 SAMN31333205 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0900753/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.064 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.570 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463504 SAMN31333080 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900755/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.642 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463505 SAMN31333079 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900757/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.907 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463506 SAMN31333078 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900760/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.194 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463507 SAMN31333077 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900762/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.666 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463508 SAMN31333076 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900765/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.668 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463509 SAMN31332762 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0900771/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.047 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463510 SAMN31333713 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0900772/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.474 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463512 SAMN31332777 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0900778/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.126 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463513 SAMN31333711 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0900780/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.214 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.784 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463514 SAMN31333710 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0900781/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.441 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463515 SAMN31332776 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0900782/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.459 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463516 SAMN31333588 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900787/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.941 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463517 SAMN31333587 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900789/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.72 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.817 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463518 SAMN31333586 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900791/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.496 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463519 SAMN31333585 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900794/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.438 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463520 SAMN31333584 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900809/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.165 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463511 SAMN31333712 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0900775/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.965 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463521 SAMN31333583 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900810/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.365 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463522 SAMN31333582 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900813/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.309 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463523 SAMN31333581 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900817/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.317 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463524 SAMN31333580 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900821/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463525 SAMN31333579 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900822/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463526 SAMN31333578 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900824/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.187 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463527 SAMN31333577 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900825/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.881 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463528 SAMN31333576 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900826/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.848 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463529 SAMN31333575 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900827/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.023 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463530 SAMN31333574 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900830/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.375 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463531 SAMN31333573 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900834/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.621 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.500 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463532 SAMN31333572 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900843/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.442 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463533 SAMN31333271 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900908/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463534 SAMN31333270 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900910/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463535 SAMN31333269 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900912/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463536 SAMN31331791 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900913/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.639 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463537 SAMN31332090 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900916/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.597 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.986 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463538 SAMN31331790 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900919/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.770 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463539 SAMN31331789 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900923/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.46 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.706 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463540 SAMN31333368 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0900925/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 15.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.031 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463541 SAMN31332017 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900926/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.453 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.601 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463542 SAMN31333155 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900928/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.832 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463543 SAMN31333154 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900929/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.496 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463544 SAMN31333153 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900930/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.786 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463545 SAMN31333152 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900931/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.095 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463546 SAMN31331788 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900934/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.374 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463547 SAMN31332016 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900936/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.555 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463548 SAMN31333151 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900937/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.589 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463549 SAMN31333150 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900939/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.377 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.847 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463550 SAMN31333106 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900940/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463551 SAMN31333105 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900941/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.795 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463552 SAMN31331812 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900943/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.618 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463553 SAMN31331787 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900947/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.426 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463554 SAMN31333268 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900948/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.538 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463555 SAMN31331786 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900950/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.865 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463556 SAMN31333213 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900951/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.583 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463557 SAMN31333075 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900953/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463558 SAMN31333212 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900954/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463559 SAMN31333074 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900957/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463560 SAMN31333267 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900959/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463561 SAMN31333266 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900961/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463562 SAMN31333073 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900963/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463563 SAMN31331785 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900965/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.661 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463564 SAMN31333122 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900967/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.811 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463565 SAMN31333539 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901026/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.767 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463566 SAMN31333538 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901031/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.463 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463567 SAMN31333537 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901032/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.260 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463568 SAMN31333536 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901033/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.109 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.327 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463569 SAMN31333535 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901036/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.233 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463570 SAMN31333534 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901037/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.151 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463571 SAMN31333533 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901038/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.704 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.133 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463572 SAMN31333532 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901039/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.519 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463573 SAMN31333531 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901040/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.636 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463574 SAMN31333530 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901042/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.246 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463575 SAMN31333529 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901043/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.213 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463576 SAMN31333528 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901046/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.244 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463577 SAMN31333527 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901048/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.869 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463578 SAMN31333526 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901049/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.450 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463579 SAMN31333525 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901051/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.760 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463580 SAMN31333523 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901053/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.744 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463581 SAMN31333524 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901052/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 92 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.047 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.013 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463582 SAMN31333522 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901054/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.221 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463583 SAMN31333521 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901055/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.643 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.010 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463584 SAMN31333520 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901056/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.470 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463585 SAMN31333519 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901060/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.88 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.068 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463586 SAMN31333518 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901065/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.292 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.827 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463587 SAMN31333517 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901067/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.142 lineage/clade name BF.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463588 SAMN31333515 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901071/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.977 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.946 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463589 SAMN31333516 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901068/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.738 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463590 SAMN31333514 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901072/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.447 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463591 SAMN31333709 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901075/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.830 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463592 SAMN31333708 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901076/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.161 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463593 SAMN31331946 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0901078/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.192 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463594 SAMN31333707 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901080/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.540 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463595 SAMN31332775 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901082/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.269 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.119 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463596 SAMN31333706 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901085/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.834 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463597 SAMN31333696 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901136/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.393 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463598 SAMN31332757 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901138/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.763 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.341 lineage/clade name BF.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463599 SAMN31332769 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901139/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.063 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463600 SAMN31333695 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901140/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.635 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463601 SAMN31333694 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901144/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.164 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463602 SAMN31331963 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901145/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.766 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463603 SAMN31333450 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901148/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.56 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.635 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463604 SAMN31331962 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901155/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.125 lineage/clade name BA.4.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463605 SAMN31333693 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901159/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.321 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463606 SAMN31333692 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901161/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.644 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463607 SAMN31333691 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901162/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.454 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463608 SAMN31333690 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901163/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.692 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.503 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463609 SAMN31333689 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901164/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.556 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463610 SAMN31331961 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901167/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.545 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.247 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463611 SAMN31333513 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901172/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.089 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463612 SAMN31333512 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901174/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.281 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463613 SAMN31333511 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901175/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.486 lineage/clade name BA.5.6.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463614 SAMN31333510 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901176/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.458 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463615 SAMN31333509 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901177/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.207 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463616 SAMN31333508 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901178/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.292 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463617 SAMN31333507 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901181/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.655 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463618 SAMN31333506 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901182/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.747 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463619 SAMN31333505 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901184/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.111 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463620 SAMN31333504 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901185/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.588 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.342 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463621 SAMN31333503 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901186/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.122 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463622 SAMN31333502 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901187/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.197 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.228 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463623 SAMN31333501 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901188/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.233 lineage/clade name BF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463624 SAMN31333500 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901189/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.824 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.109 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463625 SAMN31333499 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901193/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463626 SAMN31333498 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901194/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463627 SAMN31333497 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901195/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.758 lineage/clade name BA.2.75.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463628 SAMN31333496 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901196/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.381 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463629 SAMN31331948 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901302/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.838 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463630 SAMN31333493 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901304/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.931 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463631 SAMN31333208 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0901306/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.195 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.373 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463632 SAMN31331947 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901307/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.542 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.727 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463633 SAMN31333444 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901308/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.452 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463634 SAMN31333443 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901309/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.889 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463635 SAMN31333442 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901310/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.330 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463636 SAMN31333441 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901311/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.633 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463637 SAMN31333492 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901314/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.216 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.946 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463638 SAMN31333491 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901315/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.780 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463639 SAMN31333490 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901318/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.970 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463640 SAMN31333489 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901319/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.346 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463641 SAMN31333488 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901320/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.121 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463642 SAMN31333487 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901321/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.076 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.459 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463643 SAMN31333485 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901324/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.197 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463644 SAMN31333486 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901322/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.477 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463645 SAMN31333484 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901325/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.789 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463646 SAMN31333483 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901326/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.271 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.536 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463647 SAMN31333482 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901328/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.720 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463648 SAMN31333480 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901330/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.241 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463649 SAMN31333481 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901329/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.427 lineage/clade name BA.5.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463650 SAMN31333479 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901331/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.544 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463651 SAMN31333478 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901332/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.195 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463652 SAMN31333477 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901333/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.011 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463653 SAMN31333476 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901335/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.123 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463654 SAMN31333475 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901336/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.785 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463655 SAMN31333474 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901337/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.758 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463656 SAMN31333473 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901338/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.896 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463657 SAMN31333472 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901339/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.115 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.029 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463658 SAMN31333471 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901340/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.634 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463659 SAMN31333470 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901341/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.137 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463660 SAMN31332063 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898455/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.465 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463661 SAMN31333469 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901342/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.233 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463662 SAMN31332731 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898458/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.438 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463663 SAMN31333439 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898460/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463664 SAMN31332730 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898461/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463665 SAMN31333385 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898463/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463666 SAMN31332729 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898464/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463667 SAMN31332062 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898466/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463668 SAMN31332061 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898467/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463669 SAMN31332728 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898468/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463670 SAMN31333438 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898469/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463671 SAMN31332006 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898470/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463672 SAMN31332306 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898471/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463673 SAMN31332060 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898474/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463674 SAMN31333437 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898475/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463675 SAMN31332005 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898477/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463676 SAMN31333436 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898480/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BU.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463677 SAMN31332990 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898478/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XAZ BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463678 SAMN31332059 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898485/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463679 SAMN31332989 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898487/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.102 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.595 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463680 SAMN31332987 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898490/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.653 lineage/clade name BF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463681 SAMN31332988 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898489/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.707 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463682 SAMN31332986 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898491/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.247 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.821 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463683 SAMN31332985 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898492/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.009 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463684 SAMN31332984 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898495/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.603 lineage/clade name BF.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463685 SAMN31332305 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898494/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.888 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463686 SAMN31332983 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898497/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.068 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.397 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463687 SAMN31332058 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898496/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.344 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463688 SAMN31332304 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898498/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.353 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463689 SAMN31333384 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898499/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.600 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463690 SAMN31332982 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898500/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.601 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463691 SAMN31332981 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898503/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.356 lineage/clade name BA.5.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463692 SAMN31332980 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898504/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.362 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463693 SAMN31333383 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898505/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.118 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.739 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463694 SAMN31332979 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898506/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.050 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463695 SAMN31332978 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898509/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.098 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463696 SAMN31332057 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898512/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.735 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463697 SAMN31332303 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898513/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.636 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463698 SAMN31332977 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898516/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.149 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463699 SAMN31332976 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898519/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.504 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.593 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463700 SAMN31332302 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898521/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.814 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463701 SAMN31332975 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898524/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.538 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.677 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463702 SAMN31332974 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898528/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.458 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463703 SAMN31332301 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898530/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.910 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463704 SAMN31333435 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898531/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.808 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.414 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463705 SAMN31332300 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898533/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.069 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463706 SAMN31332299 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898535/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.438 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463707 SAMN31333434 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898537/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.289 lineage/clade name BA.5.1.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463708 SAMN31332298 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898539/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.744 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463709 SAMN31332297 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898540/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.678 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463710 SAMN31332296 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898547/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.430 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463711 SAMN31332973 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898546/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.566 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.701 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463712 SAMN31332972 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898549/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.110 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463713 SAMN31333433 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898548/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.136 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463714 SAMN31333432 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898550/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.338 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463715 SAMN31333431 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898551/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.742 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463716 SAMN31332004 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898555/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463717 SAMN31332003 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898559/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463718 SAMN31332971 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898561/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463719 SAMN31332970 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898562/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463720 SAMN31332056 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898563/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463721 SAMN31333430 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898567/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.554 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463722 SAMN31332295 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898570/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.422 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463723 SAMN31332294 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898572/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.044 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463724 SAMN31333026 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898573/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.286 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463725 SAMN31333025 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898574/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.749 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463726 SAMN31332055 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898576/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.416 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463727 SAMN31332293 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898582/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.611 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463728 SAMN31333382 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898583/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.028 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463729 SAMN31333380 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898587/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.116 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.423 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463730 SAMN31333381 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898585/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.866 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463731 SAMN31333142 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0898589/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.527 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463732 SAMN31333379 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898590/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.461 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463733 SAMN31333141 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0898593/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.172 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463734 SAMN31332054 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898597/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.243 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463735 SAMN31332292 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898596/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.064 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463736 SAMN31332053 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898598/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.074 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463737 SAMN31332969 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898599/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.124 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.663 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.663 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463738 SAMN31332968 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898600/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.917 lineage/clade name BA.2.75.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463739 SAMN31332291 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898602/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.764 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.555 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463740 SAMN31332967 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898603/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.84 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.319 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463741 SAMN31332966 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898606/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.769 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.572 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463742 SAMN31332290 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898604/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.012 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463743 SAMN31332289 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898607/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.729 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463744 SAMN31332052 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898608/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.019 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463745 SAMN31332051 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898610/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.398 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463746 SAMN31332288 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898611/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.891 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463747 SAMN31332965 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898612/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.995 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463748 SAMN31333429 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898614/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.875 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463749 SAMN31332002 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898616/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.724 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463750 SAMN31332964 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898617/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.452 lineage/clade name BA.2.75.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463751 SAMN31332001 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898618/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.696 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.758 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463752 SAMN31332287 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898619/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.699 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.823 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463753 SAMN31332963 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898621/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.442 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.508 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463754 SAMN31332962 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898622/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.352 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463755 SAMN31332286 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898624/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.238 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463756 SAMN31332961 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898625/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.767 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463757 SAMN31332916 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898862/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463758 SAMN31332915 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898865/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463759 SAMN31332914 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898867/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463760 SAMN31332913 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898868/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2.75.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463761 SAMN31333417 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898869/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463762 SAMN31331990 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898873/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463763 SAMN31332912 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898874/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463764 SAMN31332236 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898878/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463765 SAMN31333416 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898881/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463766 SAMN31332911 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898882/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463767 SAMN31332235 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898884/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463768 SAMN31332910 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898885/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463769 SAMN31332909 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898887/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463770 SAMN31332908 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898890/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463771 SAMN31332907 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898893/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463772 SAMN31332906 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898895/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463773 SAMN31332905 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898896/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463774 SAMN31332904 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898900/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.469 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463775 SAMN31332903 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898902/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.423 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463776 SAMN31332043 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898904/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.228 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463777 SAMN31332902 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898905/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.509 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463778 SAMN31332234 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898906/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.428 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463779 SAMN31332233 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898907/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.384 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463780 SAMN31332042 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898910/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.584 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463781 SAMN31332232 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898911/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.286 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463782 SAMN31332231 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898912/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.211 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463783 SAMN31332230 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898913/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.370 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463784 SAMN31332901 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898914/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.206 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463785 SAMN31333415 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898918/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463786 SAMN31332900 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898921/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463787 SAMN31333414 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898923/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463788 SAMN31331989 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898922/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463789 SAMN31332040 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899026/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.944 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463790 SAMN31332871 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899027/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.004 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.253 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463791 SAMN31332870 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899029/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.742 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463792 SAMN31332869 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899030/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.149 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463793 SAMN31332214 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899032/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.054 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463794 SAMN31332213 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899033/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463795 SAMN31332212 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899034/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.243 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.223 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463796 SAMN31333404 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899035/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.632 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463797 SAMN31332039 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899036/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.282 lineage/clade name BE.4.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463798 SAMN31332211 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899037/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.135 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463799 SAMN31332210 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899038/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.344 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463800 SAMN31333403 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899039/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.390 lineage/clade name BF.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463801 SAMN31332868 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899040/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.278 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.902 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.952 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463802 SAMN31333402 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899041/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.788 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463803 SAMN31332867 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899042/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.288 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463804 SAMN31332866 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899043/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.661 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463805 SAMN31332865 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899044/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.569 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.217 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463806 SAMN31332209 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899046/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.052 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463807 SAMN31332208 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899047/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.685 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.646 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463808 SAMN31332207 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899048/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.108 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.551 lineage/clade name BA.2.75.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463809 SAMN31332206 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899050/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.923 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463810 SAMN31331978 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899051/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.817 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.311 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463811 SAMN31331977 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899052/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.832 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463812 SAMN31331976 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899053/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.029 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.487 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463813 SAMN31333020 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0899054/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.539 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.446 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.248 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463814 SAMN31332205 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899055/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.327 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463815 SAMN31333138 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899108/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.589 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463816 SAMN31332864 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899056/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.472 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463817 SAMN31333070 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899122/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.116 lineage/clade name BE.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463818 SAMN31331973 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0899124/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.694 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.640 lineage/clade name BR.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463819 SAMN31331940 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899126/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.842 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463820 SAMN31333137 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899127/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.966 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463821 SAMN31333016 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898293/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463822 SAMN31333015 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898301/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.342 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463823 SAMN31333014 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898304/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.575 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.726 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463824 SAMN31332751 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898312/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.746 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463825 SAMN31333013 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898313/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.766 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463826 SAMN31332750 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898314/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.132 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463827 SAMN31333012 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898317/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.706 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463828 SAMN31333010 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898323/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.535 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.664 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.997 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463829 SAMN31333011 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898319/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.804 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.026 lineage/clade name BA.2.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463830 SAMN31333009 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898325/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.799 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.17 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.833 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463831 SAMN31333387 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898331/2022 collected_by Laboratory Corporation of America collection_date 2022-09-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.625 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463832 SAMN31333008 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898333/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.784 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463833 SAMN31332749 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898339/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.078 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463834 SAMN31332748 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898340/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.639 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463835 SAMN31332747 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898342/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.732 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463836 SAMN31332746 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898344/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.105 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463837 SAMN31333007 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898346/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.719 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463838 SAMN31332745 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898347/2022 collected_by Laboratory Corporation of America collection_date 2022-09-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.071 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.714 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463839 SAMN31333006 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898348/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.923 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463840 SAMN31332744 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898355/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.11 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.927 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463841 SAMN31332743 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898357/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.864 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463842 SAMN31332742 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898361/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.708 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463843 SAMN31333005 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898366/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.542 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463844 SAMN31333004 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898372/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.268 lineage/clade name BA.2.75.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463845 SAMN31333003 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898374/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.634 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463846 SAMN31332066 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898387/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.256 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.565 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.544 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463847 SAMN31332741 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898388/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.074 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463848 SAMN31333386 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0898389/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.711 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.065 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463849 SAMN31333440 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0898393/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.080 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463850 SAMN31332740 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898394/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.396 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463851 SAMN31333002 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898397/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.049 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463852 SAMN31332013 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898400/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.707 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463853 SAMN31333027 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0898402/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.580 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463854 SAMN31332012 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898403/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.953 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.129 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463855 SAMN31332011 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898404/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.770 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463856 SAMN31332010 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898407/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.328 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.887 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463857 SAMN31332009 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898408/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.648 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.876 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463858 SAMN31332008 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898411/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.744 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463859 SAMN31332007 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0898413/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.228 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463860 SAMN31332739 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898414/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.436 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463861 SAMN31332738 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898415/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.369 lineage/clade name BA.5.2.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463862 SAMN31332737 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898416/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.468 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.311 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463863 SAMN31332736 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898417/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.997 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.780 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463864 SAMN31332735 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898419/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.949 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.104 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463865 SAMN31332734 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898420/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.921 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463866 SAMN31332733 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898423/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.527 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463867 SAMN31333001 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898431/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.085 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463868 SAMN31333000 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898432/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.294 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463869 SAMN31332999 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898433/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.829 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463870 SAMN31332998 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898435/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.15 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.490 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463871 SAMN31331941 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0898436/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.145 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463872 SAMN31332997 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898437/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.587 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.362 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463873 SAMN31332732 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898438/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.472 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463874 SAMN31332996 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898439/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.324 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463875 SAMN31332995 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898440/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.479 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463876 SAMN31332994 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898442/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.119 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.629 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463877 SAMN31332993 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898443/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.591 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463878 SAMN31332992 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898444/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.327 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463879 SAMN31332065 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898445/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.077 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463880 SAMN31333149 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0898446/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.675 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463881 SAMN31333353 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0898447/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463882 SAMN31333352 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0898448/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.054 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463883 SAMN31332064 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0898452/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.268 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.143 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463884 SAMN31332991 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898454/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.667 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463887 SAMN31331933 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899354/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.031 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.699 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463888 SAMN31331932 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899355/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.869 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.855 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463889 SAMN31333130 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899356/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.095 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.015 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463890 SAMN31331931 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899357/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.998 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463891 SAMN31333129 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899359/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.68 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.581 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463892 SAMN31331929 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899362/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.245 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.194 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463893 SAMN31331930 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899360/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.007 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.332 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463894 SAMN31333060 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899363/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.452 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.307 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463895 SAMN31331928 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899365/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.641 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463896 SAMN31331927 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899366/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.504 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463897 SAMN31333059 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899367/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.203 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463898 SAMN31331926 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899368/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.431 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463899 SAMN31333058 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899369/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.670 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463900 SAMN31333057 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899372/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.272 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463901 SAMN31333056 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899376/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.657 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.585 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463902 SAMN31333055 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899377/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.218 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.467 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463903 SAMN31333054 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899379/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.770 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463904 SAMN31333053 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899380/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.478 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463905 SAMN31333052 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899382/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.512 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463885 SAMN31332200 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899351/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.233 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463886 SAMN31332199 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899352/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.515 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463906 SAMN31333051 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899383/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.111 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463907 SAMN31333050 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899385/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.086 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463908 SAMN31331925 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899386/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.780 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463909 SAMN31333049 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899387/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.175 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463910 SAMN31331924 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899388/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.831 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463911 SAMN31333047 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899393/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.964 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463912 SAMN31333048 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899392/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.521 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463913 SAMN31332198 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899394/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.035 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.072 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463914 SAMN31333046 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899397/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.682 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463915 SAMN31332862 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899398/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.215 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463916 SAMN31333045 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899399/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.335 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463917 SAMN31332228 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898985/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.663 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463918 SAMN31332227 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898987/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.964 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.258 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463919 SAMN31332226 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898988/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463920 SAMN31332885 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898989/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.345 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.087 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.254 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463921 SAMN31332225 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898990/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.131 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463922 SAMN31332884 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898991/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.711 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.201 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463923 SAMN31332224 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898994/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.311 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.041 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.071 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463924 SAMN31332883 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898995/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.848 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463925 SAMN31332223 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898996/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.060 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463926 SAMN31332222 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898997/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.470 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463927 SAMN31332221 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898998/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.246 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463928 SAMN31332220 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898999/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463929 SAMN31332882 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899002/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.258 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.722 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463930 SAMN31332219 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899004/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.102 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463931 SAMN31332881 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899005/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.292 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463932 SAMN31332880 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899006/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.585 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463933 SAMN31332879 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899007/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.994 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463934 SAMN31332878 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899009/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.069 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463935 SAMN31332877 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899010/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.425 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463936 SAMN31332218 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899011/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.613 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463937 SAMN31332876 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899012/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.794 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463938 SAMN31332875 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899013/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.184 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463939 SAMN31333405 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899015/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.031 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463940 SAMN31333406 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899014/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.491 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463941 SAMN31332217 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899016/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.946 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463942 SAMN31332874 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899017/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.310 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463943 SAMN31332041 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899019/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.712 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.237 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463944 SAMN31332873 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899020/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.878 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463945 SAMN31331979 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899021/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.14 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.466 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463946 SAMN31332872 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899024/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.193 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.269 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463947 SAMN31332216 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899022/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.836 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463948 SAMN31332215 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899025/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.594 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.827 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463949 SAMN31332858 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899454/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463950 SAMN31332195 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899455/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463951 SAMN31332857 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899462/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.468 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463952 SAMN31332856 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899463/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.146 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463953 SAMN31332038 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899464/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.394 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.020 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463954 SAMN31332037 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899467/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.950 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463955 SAMN31332194 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899468/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.239 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.946 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463956 SAMN31332855 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899469/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.649 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.387 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463957 SAMN31332854 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899470/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.276 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463958 SAMN31332853 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899472/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.381 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463959 SAMN31332852 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899473/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.753 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463960 SAMN31332851 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899475/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.778 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.812 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.531 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463961 SAMN31332850 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899477/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.249 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463962 SAMN31332849 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899479/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463963 SAMN31332193 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899480/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.654 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463964 SAMN31332848 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899481/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.076 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463965 SAMN31332847 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899482/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.212 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463966 SAMN31332846 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899483/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.407 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463967 SAMN31332192 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899485/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.660 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463968 SAMN31333028 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899486/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.787 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463969 SAMN31332190 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899491/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.796 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463970 SAMN31332191 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899488/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.909 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.494 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463971 SAMN31333400 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899494/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.769 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463972 SAMN31331975 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899498/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.374 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463973 SAMN31332189 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899507/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.263 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.697 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463974 SAMN31333376 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899508/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.590 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463975 SAMN31333369 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0899510/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.923 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463976 SAMN31333375 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899515/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.364 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463977 SAMN31332036 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899513/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.126 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463978 SAMN31332845 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899516/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.970 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463979 SAMN31332844 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899518/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.171 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463980 SAMN31332188 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899519/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.329 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.981 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463981 SAMN31332154 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899619/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.001 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.191 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463982 SAMN31332153 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899620/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.797 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463983 SAMN31332152 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899621/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.251 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463984 SAMN31332151 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899622/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.768 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.690 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463985 SAMN31332150 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899623/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.455 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463986 SAMN31332149 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899624/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.202 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.846 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463987 SAMN31332148 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899629/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.813 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463988 SAMN31332147 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899630/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.660 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463989 SAMN31332146 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899631/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.163 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463990 SAMN31332821 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899732/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.003 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463991 SAMN31333374 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899733/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.290 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463992 SAMN31332145 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899734/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.348 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463993 SAMN31332144 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899735/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.809 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.784 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463994 SAMN31332143 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899736/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.095 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.944 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463995 SAMN31332142 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899738/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.535 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463996 SAMN31332141 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899739/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.466 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463997 SAMN31332140 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899740/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.795 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.090 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463998 SAMN31332139 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899741/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.578 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15463999 SAMN31332820 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899742/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.796 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464000 SAMN31332138 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899743/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.790 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464001 SAMN31332819 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899745/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.455 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464002 SAMN31332818 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899747/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.689 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464003 SAMN31333393 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899748/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.071 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464004 SAMN31332817 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899749/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.081 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464005 SAMN31332816 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899752/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.902 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.181 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464006 SAMN31332137 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899750/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.026 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464007 SAMN31332815 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899755/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.672 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464008 SAMN31333019 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0899756/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.168 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464009 SAMN31333018 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0899757/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.446 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464010 SAMN31333145 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0899758/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.106 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464011 SAMN31333392 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899759/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.972 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464012 SAMN31333391 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0899131/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.113 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.390 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464013 SAMN31333144 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0899760/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.840 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464014 SAMN31333136 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899139/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.147 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.832 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464015 SAMN31333069 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899151/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.333 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464016 SAMN31333135 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899156/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.441 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.148 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464017 SAMN31333134 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899157/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.468 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464018 SAMN31333068 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899159/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.312 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464019 SAMN31331939 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899163/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.754 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.443 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464020 SAMN31331938 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899164/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.234 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464021 SAMN31333067 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899169/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.512 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464022 SAMN31331937 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899171/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.560 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464023 SAMN31333066 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899175/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.238 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464024 SAMN31333065 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899179/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.534 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464025 SAMN31331936 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899182/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.476 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.520 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464026 SAMN31333064 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899183/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.997 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464027 SAMN31331972 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0899188/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.446 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464028 SAMN31331935 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899190/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.249 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464029 SAMN31332863 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899194/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.351 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464030 SAMN31333390 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0899199/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.514 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464031 SAMN31333133 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899204/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.651 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464032 SAMN31333132 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899206/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.823 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464033 SAMN31333063 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899207/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.642 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464034 SAMN31333389 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0899209/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.08 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.960 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464035 SAMN31333062 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899208/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.245 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464036 SAMN31333061 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899212/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.531 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.739 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464037 SAMN31333131 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899213/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.092 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464038 SAMN31333388 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0899228/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.753 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464039 SAMN31331934 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899243/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.188 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464040 SAMN31331971 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0899238/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.270 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464041 SAMN31332203 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899348/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.937 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464042 SAMN31332204 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899347/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.784 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464043 SAMN31332202 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899349/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.486 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464044 SAMN31332201 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899350/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.162 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464045 SAMN31333664 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899839/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.567 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.436 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464046 SAMN31333663 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899841/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.843 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464047 SAMN31333662 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899842/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.716 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464048 SAMN31333661 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899843/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.112 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.660 lineage/clade name BA.2.75.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464049 SAMN31333366 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0899845/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.216 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464050 SAMN31333660 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899846/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.808 lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464051 SAMN31331851 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0899848/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.040 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464052 SAMN31333659 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899849/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.043 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464053 SAMN31333658 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899850/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.809 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464054 SAMN31333657 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899851/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.447 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464055 SAMN31333656 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899852/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.929 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464056 SAMN31333655 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899854/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.822 lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464057 SAMN31333654 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899856/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.708 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.236 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464058 SAMN31333653 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899858/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.748 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.223 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464059 SAMN31333652 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899859/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.503 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464060 SAMN31333651 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899862/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.479 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464061 SAMN31333650 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899863/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.775 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.535 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464062 SAMN31333649 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899864/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.440 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464063 SAMN31333648 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899865/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.397 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464064 SAMN31333365 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0899866/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.496 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464065 SAMN31333647 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899867/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.72 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.144 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464066 SAMN31333646 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899868/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.952 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.421 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464067 SAMN31333644 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899870/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.259 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464068 SAMN31333645 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899869/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.834 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464069 SAMN31333643 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899871/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.778 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.665 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464070 SAMN31333642 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899872/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.078 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464071 SAMN31333641 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899873/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.037 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464072 SAMN31333640 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899875/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.530 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464073 SAMN31333639 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899876/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.431 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464074 SAMN31333638 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899877/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.156 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.251 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464075 SAMN31333637 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899878/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.261 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464076 SAMN31333636 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899879/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.230 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464077 SAMN31333635 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899881/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.398 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464078 SAMN31333634 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899883/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.794 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464079 SAMN31333633 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899885/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.828 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464080 SAMN31333632 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899886/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.599 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.646 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464081 SAMN31333631 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899888/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464082 SAMN31333630 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899892/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.745 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.679 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464083 SAMN31333629 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899894/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.195 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464084 SAMN31333628 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899897/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.433 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.484 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464085 SAMN31333627 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899898/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.668 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464086 SAMN31333626 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899899/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.874 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464087 SAMN31333625 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899900/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.522 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464088 SAMN31333624 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899901/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.302 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464089 SAMN31333622 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899908/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.369 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464090 SAMN31333623 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899907/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.645 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464091 SAMN31333621 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899909/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.155 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.868 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464092 SAMN31333620 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899913/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.739 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464093 SAMN31333619 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899916/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.622 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464094 SAMN31333618 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899917/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.743 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464095 SAMN31333617 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899918/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.866 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.974 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464096 SAMN31333616 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899921/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.330 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464097 SAMN31333454 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0899924/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.172 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464098 SAMN31333716 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0899927/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.512 lineage/clade name BA.5.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464099 SAMN31333453 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0899930/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.995 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464100 SAMN31333715 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0899931/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.792 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.297 lineage/clade name BL.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464101 SAMN31333099 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0899932/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.649 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464102 SAMN31331968 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0899936/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.762 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464103 SAMN31333714 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0899935/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.577 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464104 SAMN31331967 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0899937/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.223 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464105 SAMN31333720 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0899939/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.428 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.612 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464106 SAMN31332088 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0899938/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.531 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.863 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464107 SAMN31333207 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0899940/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.915 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464108 SAMN31331966 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0899941/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.173 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464109 SAMN31333313 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900255/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.697 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.453 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464110 SAMN31333249 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900259/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.252 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.510 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464111 SAMN31333248 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900260/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.554 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464112 SAMN31333174 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900262/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.248 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.618 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464113 SAMN31333091 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900264/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.288 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.607 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464114 SAMN31332025 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900263/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.298 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464115 SAMN31333172 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900266/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.699 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464116 SAMN31333173 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900265/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.819 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.255 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464117 SAMN31333171 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900267/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.761 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464118 SAMN31333170 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900268/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.159 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464119 SAMN31331833 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900270/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.887 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.427 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464120 SAMN31333312 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900269/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.348 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464121 SAMN31333247 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900272/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.870 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464122 SAMN31333113 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900273/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.952 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464123 SAMN31333311 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900274/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.679 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464124 SAMN31333169 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900275/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.137 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.513 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464125 SAMN31333168 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900276/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.16 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.109 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464126 SAMN31331832 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900277/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.801 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.365 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464127 SAMN31331831 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900278/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.994 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464128 SAMN31333310 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900279/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.364 lineage/clade name BF.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464129 SAMN31333309 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900280/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.158 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464130 SAMN31333125 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900282/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464131 SAMN31333167 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900283/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464132 SAMN31333246 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900284/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464133 SAMN31331830 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900286/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464134 SAMN31333166 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900287/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464135 SAMN31333245 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900288/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464136 SAMN31333308 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900289/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464137 SAMN31333090 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900292/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464138 SAMN31333244 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900293/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464139 SAMN31333307 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900296/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.863 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464140 SAMN31331829 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900301/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.222 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.206 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464141 SAMN31333600 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900481/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.368 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.998 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464142 SAMN31333599 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900483/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.794 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.652 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464143 SAMN31333598 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900485/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.184 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464144 SAMN31333597 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900486/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.917 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464145 SAMN31333595 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900490/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.789 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.602 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464146 SAMN31333596 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900488/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.001 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.576 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464147 SAMN31333594 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900492/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.657 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464148 SAMN31333593 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900493/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.83 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.231 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.663 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464149 SAMN31333592 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900494/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.215 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464150 SAMN31333590 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900496/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.482 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.156 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464151 SAMN31333591 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900495/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.244 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464152 SAMN31333589 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900497/2022 collected_by Laboratory Corporation of America collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.426 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464153 SAMN31331914 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900499/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 97 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464154 SAMN31332084 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900501/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464155 SAMN31332083 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900503/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464156 SAMN31331913 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900504/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464157 SAMN31332260 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898793/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.330 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464158 SAMN31332261 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898792/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.431 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464159 SAMN31332926 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898796/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.933 lineage/clade name BA.2.75 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464160 SAMN31332259 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898800/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.714 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464161 SAMN31332258 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898801/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.542 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464162 SAMN31332257 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898802/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.269 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464163 SAMN31332256 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898803/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.852 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464164 SAMN31332925 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898804/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.239 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464165 SAMN31332255 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898805/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.138 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464166 SAMN31332924 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898806/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.300 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464167 SAMN31332254 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898807/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.488 lineage/clade name BA.2.75.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464168 SAMN31332923 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898808/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.420 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464169 SAMN31332922 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898809/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.188 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464170 SAMN31332921 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898810/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.238 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464171 SAMN31332825 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899560/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.917 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464172 SAMN31332176 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899563/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.668 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464173 SAMN31332175 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899564/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.088 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.157 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464174 SAMN31332174 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899566/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.068 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.215 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464175 SAMN31332173 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899568/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.676 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.648 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464176 SAMN31333399 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899569/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.961 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.035 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464177 SAMN31333398 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899571/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.015 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464178 SAMN31333397 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899572/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.803 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464179 SAMN31332172 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899573/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.894 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464180 SAMN31332171 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899574/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.072 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464181 SAMN31332170 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899575/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.426 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.616 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464182 SAMN31332824 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899581/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.973 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.486 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464183 SAMN31332169 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899582/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.609 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464184 SAMN31332168 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899584/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.221 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464185 SAMN31332167 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899586/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.086 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.660 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464186 SAMN31332166 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899587/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.779 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464187 SAMN31332165 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899589/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.218 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464188 SAMN31332164 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899590/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.058 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464189 SAMN31332823 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899592/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.576 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.118 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464190 SAMN31332163 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899595/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.543 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464191 SAMN31332162 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899597/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.385 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464192 SAMN31332161 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899599/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464193 SAMN31332160 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899600/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.378 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464194 SAMN31332159 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899602/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.474 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.803 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464195 SAMN31332158 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899603/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.849 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464196 SAMN31332157 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899604/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.289 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464197 SAMN31333396 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899606/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464198 SAMN31333395 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899607/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464199 SAMN31332156 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899610/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464200 SAMN31332822 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899612/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464201 SAMN31333394 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899613/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464202 SAMN31332155 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899618/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464203 SAMN31332087 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0899944/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.995 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.909 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464204 SAMN31331965 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0899952/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.684 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464205 SAMN31333615 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899946/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.520 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464206 SAMN31333614 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899953/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.474 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.659 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464207 SAMN31333613 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899957/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.523 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.276 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464208 SAMN31333364 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0899956/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.040 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464209 SAMN31333612 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899958/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464210 SAMN31333610 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899960/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464211 SAMN31333611 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899959/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464212 SAMN31333609 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899961/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464213 SAMN31333607 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899963/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464214 SAMN31333608 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899962/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464215 SAMN31333606 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899964/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464216 SAMN31331850 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0899969/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.674 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464217 SAMN31333605 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899965/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464218 SAMN31333121 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0899970/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.275 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464219 SAMN31332121 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0899976/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.298 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464220 SAMN31333197 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0899972/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.301 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464221 SAMN31332120 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0899977/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.267 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464222 SAMN31333350 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0899978/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.141 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.025 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464223 SAMN31333349 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0899979/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464224 SAMN31332032 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899980/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.706 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464225 SAMN31333098 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0899985/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.519 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.611 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464226 SAMN31332119 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0899984/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.303 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.354 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464227 SAMN31333348 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0899987/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.978 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464228 SAMN31333264 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0899991/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.006 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464229 SAMN31333263 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0899992/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.154 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.690 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464230 SAMN31331811 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0899994/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.008 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464231 SAMN31333196 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0899999/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.960 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464232 SAMN31332031 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900001/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.143 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.992 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464233 SAMN31333347 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900002/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.099 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464234 SAMN31333346 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900006/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.539 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464235 SAMN31331802 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900202/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.785 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464236 SAMN31332028 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900204/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.861 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464237 SAMN31333322 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900206/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.138 lineage/clade name BR.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464238 SAMN31333114 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900207/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.651 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464239 SAMN31332109 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900209/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.096 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464240 SAMN31332110 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900208/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.326 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464241 SAMN31331801 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900211/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.097 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464242 SAMN31333321 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900212/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.353 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464243 SAMN31333320 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900214/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.422 lineage/clade name BF.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464244 SAMN31333319 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900216/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.665 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464245 SAMN31331800 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900217/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.489 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464246 SAMN31331799 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900218/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.498 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.053 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464247 SAMN31332108 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900220/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.842 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464248 SAMN31333178 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900221/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.611 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464249 SAMN31333177 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900222/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.875 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.391 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464250 SAMN31332027 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900224/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.882 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464251 SAMN31331838 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900227/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.184 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464252 SAMN31331837 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900229/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.101 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.941 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464253 SAMN31333318 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900230/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.461 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464254 SAMN31333176 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900232/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.47 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.932 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464255 SAMN31331836 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900234/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.228 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464256 SAMN31333252 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900235/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.059 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464257 SAMN31333317 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900236/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.144 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464258 SAMN31333316 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900238/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.016 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464259 SAMN31333251 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900239/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.393 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.591 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464260 SAMN31332026 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900243/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.815 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464261 SAMN31333175 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900240/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.187 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464262 SAMN31333250 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900245/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.225 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.996 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464263 SAMN31333315 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900247/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.979 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464264 SAMN31333314 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900248/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.995 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464265 SAMN31331835 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900251/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.967 lineage/clade name BF.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464266 SAMN31331834 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900252/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.567 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464267 SAMN31331877 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900620/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464268 SAMN31331876 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900624/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464269 SAMN31332075 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900626/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464270 SAMN31332074 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900628/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464271 SAMN31331875 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900629/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464272 SAMN31331874 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900630/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464273 SAMN31332073 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900631/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464274 SAMN31331873 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900633/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464275 SAMN31331872 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900634/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464276 SAMN31331871 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900635/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464277 SAMN31331870 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900636/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464278 SAMN31331869 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900637/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464279 SAMN31331868 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900638/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464280 SAMN31331867 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900639/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464281 SAMN31332072 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900641/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464282 SAMN31331866 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900643/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464283 SAMN31333355 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900644/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464284 SAMN31331865 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900646/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464285 SAMN31331863 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900655/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464286 SAMN31331864 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900649/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464287 SAMN31332071 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900656/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464288 SAMN31333354 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0900657/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464289 SAMN31331862 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900658/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464290 SAMN31332070 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900663/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464291 SAMN31332069 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900664/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464292 SAMN31331861 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900668/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464293 SAMN31331860 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900671/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464294 SAMN31331859 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900675/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464295 SAMN31331858 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900676/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464296 SAMN31331857 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900677/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464297 SAMN31331856 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900679/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464298 SAMN31333721 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AK-CDC-LC0900682/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Alaska host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464299 SAMN31333571 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900844/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.772 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464300 SAMN31333570 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900847/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.394 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464301 SAMN31333569 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900850/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.89 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.500 lineage/clade name BA.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464302 SAMN31333568 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900851/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.189 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464303 SAMN31333567 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900853/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.963 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.922 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464304 SAMN31333566 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900854/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.445 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.21 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.422 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464305 SAMN31333565 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900860/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464306 SAMN31333564 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900863/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464307 SAMN31333280 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900865/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.522 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.684 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464308 SAMN31331818 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900866/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.472 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464309 SAMN31331817 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900867/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.859 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464310 SAMN31333279 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900872/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.866 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.451 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464311 SAMN31331816 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900875/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.784 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464312 SAMN31333278 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900873/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.049 lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464313 SAMN31333277 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900876/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.398 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464314 SAMN31333276 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900878/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.496 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464315 SAMN31333108 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900879/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.310 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464316 SAMN31333217 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900881/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.961 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464317 SAMN31333216 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900884/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.384 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464318 SAMN31331814 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900885/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.004 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464319 SAMN31331815 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900883/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.399 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464320 SAMN31333215 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900891/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.367 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.550 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464321 SAMN31333107 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900890/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.159 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.764 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464322 SAMN31333275 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900892/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.473 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464323 SAMN31332091 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900893/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.820 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464324 SAMN31331792 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900896/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.162 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464325 SAMN31333156 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900897/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.882 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464326 SAMN31331813 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900898/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464327 SAMN31333274 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900900/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464328 SAMN31333214 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900903/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464329 SAMN31333273 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900905/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464330 SAMN31333272 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900907/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464331 SAMN31333044 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899404/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.829 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464332 SAMN31333043 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899405/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.043 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464333 SAMN31333042 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899406/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464334 SAMN31333041 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899408/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.710 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464335 SAMN31331923 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899412/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.123 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464336 SAMN31333040 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899413/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.011 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464337 SAMN31333039 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899414/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.042 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464338 SAMN31331922 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899415/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.832 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464339 SAMN31333038 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899417/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.112 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.828 lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464340 SAMN31333037 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899418/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.672 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464341 SAMN31333036 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899419/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.871 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464342 SAMN31331921 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0899420/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.956 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464343 SAMN31333035 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899421/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.168 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464344 SAMN31333034 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899422/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.354 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464345 SAMN31333033 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899423/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.664 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464346 SAMN31333032 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899424/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.519 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.972 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464347 SAMN31333030 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899428/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.172 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464348 SAMN31333031 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899427/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.201 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464349 SAMN31333128 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0899429/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.749 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464350 SAMN31333147 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0899431/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.121 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.488 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464351 SAMN31332861 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899432/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.205 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464352 SAMN31333370 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0899433/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.756 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464353 SAMN31333146 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0899435/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.435 lineage/clade name BA.5.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464354 SAMN31333401 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0899436/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.375 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.926 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464355 SAMN31333029 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0899437/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.625 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.363 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464356 SAMN31332197 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899445/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.508 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464357 SAMN31331969 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0899438/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.383 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464358 SAMN31332860 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899447/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.391 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464359 SAMN31333378 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899450/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.937 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464360 SAMN31332859 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899451/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.104 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464361 SAMN31333377 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0899452/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.443 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464362 SAMN31332196 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899453/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.938 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.647 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464363 SAMN31332842 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899521/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.819 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464364 SAMN31332843 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899520/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.939 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464365 SAMN31332187 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899522/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.348 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.474 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464366 SAMN31332186 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899523/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.473 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464367 SAMN31332185 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899524/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.620 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464368 SAMN31332184 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899525/2022 collected_by Laboratory Corporation of America collection_date 2022-09-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464369 SAMN31332841 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899527/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.735 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464370 SAMN31332840 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899528/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.347 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.834 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464371 SAMN31331974 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0899530/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.825 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464372 SAMN31332183 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899531/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.241 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464373 SAMN31332182 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899532/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.004 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.404 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464374 SAMN31332839 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899533/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.798 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.576 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464375 SAMN31332838 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899534/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.027 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464376 SAMN31332181 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899535/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.352 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464377 SAMN31332837 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899536/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464378 SAMN31332180 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899537/2022 collected_by Laboratory Corporation of America collection_date 2022-09-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.674 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464379 SAMN31332836 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899539/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.901 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464380 SAMN31332835 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899540/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.967 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464381 SAMN31332834 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899541/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.314 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464382 SAMN31332833 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899543/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.038 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.720 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464383 SAMN31332179 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899544/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.880 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464384 SAMN31332035 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899546/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464385 SAMN31332831 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899549/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.38 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.065 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464386 SAMN31332832 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899548/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.841 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464387 SAMN31332830 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899550/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.851 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.720 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464388 SAMN31332829 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899551/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.197 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.697 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464389 SAMN31332828 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899552/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.564 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464390 SAMN31332034 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0899553/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.175 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.686 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464391 SAMN31332827 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899556/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.104 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464392 SAMN31332826 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899557/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.057 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.582 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.499 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464393 SAMN31332178 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899558/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.860 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464394 SAMN31332177 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899559/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.98 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.385 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464395 SAMN31332793 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899796/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.060 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464396 SAMN31332792 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899797/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.232 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.609 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464397 SAMN31332791 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899798/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.247 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464398 SAMN31332790 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899799/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.694 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464399 SAMN31332789 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899800/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.113 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464400 SAMN31332787 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899802/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.362 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.315 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464401 SAMN31332788 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899801/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.627 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464402 SAMN31332786 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899803/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.934 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.477 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464403 SAMN31332785 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899804/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.552 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464404 SAMN31332130 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899805/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.994 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464405 SAMN31332784 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899806/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.636 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464406 SAMN31332783 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899808/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.761 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464407 SAMN31332782 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899809/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.285 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464408 SAMN31332129 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899812/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.987 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464409 SAMN31332781 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899813/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.879 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464410 SAMN31332128 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899814/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.389 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.187 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464411 SAMN31332127 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899815/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.458 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464412 SAMN31332126 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899816/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.009 lineage/clade name BA.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464413 SAMN31332780 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899817/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.401 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.525 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464414 SAMN31332125 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899819/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.326 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464415 SAMN31332124 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899820/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.373 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464416 SAMN31332779 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899821/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.294 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464417 SAMN31332123 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899823/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.111 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464418 SAMN31332778 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0899822/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.991 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464419 SAMN31332122 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0899824/2022 collected_by Laboratory Corporation of America collection_date 2022-09-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.390 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464420 SAMN31333671 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899827/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464421 SAMN31333670 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899829/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464422 SAMN31333669 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899830/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464423 SAMN31333668 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899831/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464424 SAMN31333666 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899834/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464425 SAMN31333667 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899832/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464426 SAMN31333665 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0899835/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464427 SAMN31333262 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900007/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.346 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.004 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464428 SAMN31333261 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900011/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.548 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464429 SAMN31333260 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900013/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.607 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464430 SAMN31332118 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900043/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.269 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464431 SAMN31333259 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900045/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464432 SAMN31333345 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900046/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464433 SAMN31333097 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900048/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464434 SAMN31331849 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900049/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464435 SAMN31331848 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900051/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464436 SAMN31331847 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900052/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464437 SAMN31331810 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900056/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.628 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.297 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.564 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464438 SAMN31333127 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900057/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.409 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.776 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464439 SAMN31333120 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900058/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464440 SAMN31333344 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900059/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.048 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464441 SAMN31333343 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900061/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.695 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464442 SAMN31333126 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900062/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.894 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464443 SAMN31332117 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900064/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.213 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.794 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464444 SAMN31332116 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900065/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.543 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.336 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464445 SAMN31332115 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900066/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.675 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464446 SAMN31331809 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900080/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.869 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464447 SAMN31333096 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900079/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.920 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464448 SAMN31333342 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900081/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.893 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464449 SAMN31331846 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900082/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.929 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464450 SAMN31331845 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900083/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.355 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.339 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464451 SAMN31331844 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900084/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.472 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464452 SAMN31331843 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900085/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.533 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464453 SAMN31333341 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900086/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.841 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464454 SAMN31333340 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900088/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.955 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464455 SAMN31333195 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900092/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464456 SAMN31331842 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900091/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464457 SAMN31333258 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900093/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464458 SAMN31331808 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900095/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.620 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464459 SAMN31332114 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900096/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.902 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.236 lineage/clade name BE.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464460 SAMN31333339 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900100/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.425 lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464461 SAMN31333338 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900101/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.192 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.177 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464462 SAMN31333337 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900102/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.971 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464463 SAMN31333336 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900103/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.986 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464464 SAMN31332113 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900108/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.004 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464465 SAMN31333335 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900104/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.958 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.601 lineage/clade name BA.5.2.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464466 SAMN31331841 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900109/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.937 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464467 SAMN31331840 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900111/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.353 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464468 SAMN31333194 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900113/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.458 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464469 SAMN31333334 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900116/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.153 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.904 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464470 SAMN31333193 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900117/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.144 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.959 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464471 SAMN31333333 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900124/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464472 SAMN31331839 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900123/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464473 SAMN31333192 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900125/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464474 SAMN31331920 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0900127/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464475 SAMN31333332 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900128/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464476 SAMN31333191 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900129/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464477 SAMN31333190 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900130/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464478 SAMN31333331 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900131/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464479 SAMN31333330 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900132/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464480 SAMN31333329 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900135/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464481 SAMN31331919 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0900137/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.072 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464482 SAMN31333257 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900139/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.053 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464483 SAMN31333328 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900140/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.896 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464484 SAMN31333118 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900142/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.187 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.154 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464485 SAMN31333119 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900141/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.241 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464486 SAMN31333117 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900145/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464487 SAMN31331918 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900143/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464488 SAMN31333327 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900150/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464489 SAMN31333095 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900149/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464490 SAMN31333326 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900153/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464491 SAMN31333306 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900302/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.996 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464492 SAMN31332107 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900303/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.208 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464493 SAMN31332106 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900304/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.067 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464494 SAMN31333112 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900305/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.234 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464495 SAMN31333305 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900307/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.425 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464496 SAMN31333165 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900309/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.509 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464497 SAMN31331828 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900310/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464498 SAMN31332105 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900311/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 11.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464499 SAMN31331827 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900313/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.911 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464500 SAMN31333243 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900312/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.656 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464501 SAMN31333242 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900318/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.136 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464502 SAMN31332024 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900314/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.935 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464503 SAMN31332104 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900322/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.538 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.932 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.224 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464504 SAMN31333164 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900323/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.152 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.634 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464505 SAMN31333304 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900326/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.624 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464506 SAMN31331798 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900329/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.017 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464507 SAMN31333303 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900333/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.955 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464508 SAMN31333241 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900341/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.106 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464509 SAMN31333302 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900336/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.676 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.411 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464510 SAMN31333163 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900342/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.960 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464511 SAMN31331826 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900343/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.706 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.937 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464512 SAMN31333162 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900344/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.286 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464513 SAMN31331825 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900348/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.230 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464514 SAMN31333301 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900352/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.078 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464515 SAMN31333300 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900355/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.971 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464516 SAMN31333089 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900362/2022 collected_by Laboratory Corporation of America collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.253 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.990 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464517 SAMN31333299 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900369/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.099 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464518 SAMN31332103 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900373/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.968 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464519 SAMN31332102 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900374/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.116 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.535 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464520 SAMN31332101 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900375/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.128 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.409 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464521 SAMN31332100 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900379/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.755 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464522 SAMN31333124 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900381/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.984 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464523 SAMN31332099 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900380/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.198 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.477 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464524 SAMN31333123 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0900382/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.567 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464525 SAMN31333298 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900385/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.511 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464526 SAMN31333297 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900386/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.363 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464527 SAMN31333296 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900388/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.359 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464528 SAMN31332098 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900391/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.958 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464529 SAMN31333295 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900392/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.817 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464530 SAMN31331917 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900395/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464531 SAMN31331916 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900396/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464532 SAMN31331915 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900397/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464533 SAMN31333111 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900403/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.457 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.828 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.790 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464534 SAMN31332085 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900399/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464535 SAMN31333088 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900404/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.754 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464536 SAMN31333240 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900406/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.274 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464537 SAMN31333110 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900407/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.999 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464538 SAMN31333109 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0900408/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.067 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.724 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464539 SAMN31333239 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900409/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.773 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464540 SAMN31331824 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900412/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464541 SAMN31331823 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900414/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464542 SAMN31333238 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900416/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464543 SAMN31333161 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900417/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464544 SAMN31333294 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900418/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464545 SAMN31333293 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900421/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464546 SAMN31333160 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0900422/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464547 SAMN31333237 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900424/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464548 SAMN31333236 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900425/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464549 SAMN31333292 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900426/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.42 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.412 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464550 SAMN31333087 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900427/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.908 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464551 SAMN31333086 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900428/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.556 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464552 SAMN31333291 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900431/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.322 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.453 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464553 SAMN31332097 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900432/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.910 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464554 SAMN31332023 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900434/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.552 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.433 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464555 SAMN31332068 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900683/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464556 SAMN31332067 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0900686/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464557 SAMN31331855 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900687/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464558 SAMN31331854 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900688/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464559 SAMN31331853 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0900689/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464560 SAMN31333287 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900691/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.621 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 11.684 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.449 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464561 SAMN31332019 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900692/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.596 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464562 SAMN31331822 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900693/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.468 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464563 SAMN31333286 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900694/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.925 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.468 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464564 SAMN31333226 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900695/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.483 lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464565 SAMN31333225 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900696/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.912 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464566 SAMN31333083 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900697/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.082 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.437 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464567 SAMN31333285 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900702/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464568 SAMN31331821 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900703/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464569 SAMN31331820 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900707/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464570 SAMN31331819 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0900709/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464571 SAMN31333224 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900710/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464572 SAMN31333223 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900714/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464573 SAMN31333284 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900716/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.307 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464574 SAMN31333283 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900717/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.158 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464575 SAMN31333222 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900719/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.775 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464576 SAMN31333282 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900721/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.959 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.393 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464577 SAMN31333221 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900720/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.941 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464578 SAMN31332093 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900728/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.412 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464579 SAMN31333281 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0900722/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.005 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.785 lineage/clade name BA.5.2.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464580 SAMN31332018 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900730/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.789 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464581 SAMN31332092 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0900733/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.848 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464582 SAMN31333082 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0900736/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.935 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.091 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464583 SAMN31333220 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900738/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.245 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464584 SAMN31333219 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900740/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.632 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.102 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464585 SAMN31333367 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0900742/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.418 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464586 SAMN31333218 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900746/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.472 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.528 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464587 SAMN31331784 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0900968/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.439 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.504 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464588 SAMN31332015 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900971/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464589 SAMN31333211 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900972/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.402 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464590 SAMN31332014 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0900973/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.785 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464591 SAMN31333210 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900974/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.984 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464592 SAMN31333209 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0900975/2022 collected_by Laboratory Corporation of America collection_date 2022-09-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.257 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464593 SAMN31333563 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900979/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.885 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464594 SAMN31333562 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900980/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.086 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464595 SAMN31333561 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900981/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.375 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464596 SAMN31333560 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900982/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.796 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464597 SAMN31333559 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900983/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.862 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.208 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464598 SAMN31333557 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900986/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.960 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464599 SAMN31333558 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900985/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.454 lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464600 SAMN31333363 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0900987/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.204 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.667 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464601 SAMN31333556 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900988/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.775 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464602 SAMN31333555 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900990/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.687 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464603 SAMN31333554 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900991/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.17 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.969 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.987 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464604 SAMN31333553 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900992/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.27 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.167 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464605 SAMN31333362 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0900993/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.375 lineage/clade name BF.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464606 SAMN31333552 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900995/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.511 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464607 SAMN31333551 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900998/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.120 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464608 SAMN31333550 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0900999/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.059 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.498 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464609 SAMN31333549 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901000/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.486 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464610 SAMN31333548 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901007/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.592 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464611 SAMN31333547 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901009/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.798 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.759 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464612 SAMN31333546 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901010/2022 collected_by Laboratory Corporation of America collection_date 2022-09-24 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.068 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464613 SAMN31333545 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901014/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.335 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464614 SAMN31333544 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901017/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.999 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464615 SAMN31333543 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901018/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.121 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.433 lineage/clade name BM.4.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464616 SAMN31333542 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901019/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.069 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.436 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464617 SAMN31333541 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901020/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.626 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464618 SAMN31333540 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901024/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.940 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464619 SAMN31332768 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901197/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.985 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464620 SAMN31333719 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0901198/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.938 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464621 SAMN31333718 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AR-CDC-LC0901200/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.306 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464622 SAMN31331960 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901201/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.618 lineage/clade name BA.5.2.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464623 SAMN31331959 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901202/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.062 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.504 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464624 SAMN31333449 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901206/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.088 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464625 SAMN31333495 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901207/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.238 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464626 SAMN31333448 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901208/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.707 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.154 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464627 SAMN31331958 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901211/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.874 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464628 SAMN31331957 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0901212/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.247 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464629 SAMN31333447 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901213/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.756 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.585 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464630 SAMN31332766 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901218/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.582 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.542 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464631 SAMN31332767 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901214/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.111 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464632 SAMN31333688 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901221/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.865 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464633 SAMN31332765 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901224/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.584 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.453 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464634 SAMN31332764 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901225/2022 collected_by Laboratory Corporation of America collection_date 2022-09-26 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.867 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.123 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.566 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464635 SAMN31332756 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901228/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.151 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464636 SAMN31332755 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901229/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.656 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.945 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464637 SAMN31331944 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0901232/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.870 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464638 SAMN31332754 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901233/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.746 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.879 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464639 SAMN31332763 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0901234/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.383 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464640 SAMN31332753 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0901235/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.447 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.464 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464641 SAMN31333072 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0901236/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.977 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464642 SAMN31333071 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0901237/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.293 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.457 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464643 SAMN31333103 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0901238/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.296 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.197 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464644 SAMN31333446 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0901242/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.288 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464645 SAMN31333200 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901243/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.995 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464646 SAMN31333199 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0901244/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.946 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.616 lineage/clade name BF.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464647 SAMN31333687 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901246/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.168 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.455 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.771 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464649 SAMN31333685 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901248/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.553 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.341 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.226 lineage/clade name BA.5.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464650 SAMN31331943 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0901251/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.979 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464651 SAMN31333468 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901344/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.499 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464652 SAMN31333467 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901345/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.003 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464653 SAMN31333466 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901346/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.569 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464654 SAMN31333465 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901348/2022 collected_by Laboratory Corporation of America collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.695 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464655 SAMN31333464 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901350/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.776 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464656 SAMN31333463 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901352/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.099 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464657 SAMN31333462 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901353/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.994 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464658 SAMN31333461 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901354/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.013 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464659 SAMN31333460 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901355/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.973 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464660 SAMN31333459 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901356/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.835 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.243 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464661 SAMN31333457 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901358/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.382 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.243 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.837 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464662 SAMN31333458 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901357/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.444 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.101 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464663 SAMN31333456 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901359/2022 collected_by Laboratory Corporation of America collection_date 2022-09-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.688 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464664 SAMN31333455 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0901361/2022 collected_by Laboratory Corporation of America collection_date 2022-09-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464665 SAMN31332960 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0898631/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.996 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.280 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464666 SAMN31332285 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0898632/2022 collected_by Laboratory Corporation of America collection_date 2022-09-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.866 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15464648 SAMN31333686 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0901247/2022 collected_by Laboratory Corporation of America collection_date 2022-09-27 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.984 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated