SRS15505009 SAMN31396409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138664/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.62 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505010 SAMN31396408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138675/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-09-30 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.24 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505011 SAMN31396407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138678/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.73 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505012 SAMN31396406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138680/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.98 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505013 SAMN31396405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138681/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.54 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505014 SAMN31396404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138683/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15.9 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505015 SAMN31396403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138687/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17.02 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505016 SAMN31396402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138690/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.66 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505017 SAMN31396401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138692/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.4 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505018 SAMN31396400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138730/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19.33 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505019 SAMN31396399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138740/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18.27 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505020 SAMN31396398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42138747/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16.9 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505021 SAMN31396431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187074/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505022 SAMN31396430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187078/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505023 SAMN31396429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187079/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505024 SAMN31396428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187080/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505025 SAMN31396427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187085/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505026 SAMN31396426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187087/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505027 SAMN31396425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187088/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BE.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505028 SAMN31396424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187094/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505029 SAMN31396423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187097/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505030 SAMN31396421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187100/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505031 SAMN31396422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187099/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505032 SAMN31396420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187102/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505033 SAMN31396418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187105/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505034 SAMN31396419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187103/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505035 SAMN31396417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187107/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505036 SAMN31396416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187108/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505037 SAMN31396415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187113/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505038 SAMN31396414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187115/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505039 SAMN31396413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187118/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505040 SAMN31396412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187120/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505041 SAMN31396000 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187190/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.72 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505042 SAMN31396001 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187189/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.48 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505043 SAMN31395999 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187192/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.98 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505044 SAMN31395997 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187198/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.98 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505045 SAMN31395998 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187196/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.27 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505046 SAMN31395996 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187201/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.48 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505047 SAMN31395994 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187204/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.73 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505048 SAMN31395995 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187203/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.92 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505049 SAMN31395993 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187205/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.32 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505050 SAMN31395992 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187207/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.18 lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505051 SAMN31395991 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187208/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.65 lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505052 SAMN31395990 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187209/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.5 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505053 SAMN31395989 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187218/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.68 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505054 SAMN31395988 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187222/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.16 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505055 SAMN31395987 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187223/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.41 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505056 SAMN31395986 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187225/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.63 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505057 SAMN31395985 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187227/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.28 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505058 SAMN31395984 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187229/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.92 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505059 SAMN31395983 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187230/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.64 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505060 SAMN31395982 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187232/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.28 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505061 SAMN31395981 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187235/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.14 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505062 SAMN31395980 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187238/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.92 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505063 SAMN31395979 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187239/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.24 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505064 SAMN31395978 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187240/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.77 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505065 SAMN31395977 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187241/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.25 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505066 SAMN31395976 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187249/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.66 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505067 SAMN31395975 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187252/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.62 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505068 SAMN31395974 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187254/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.98 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505069 SAMN31395973 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187255/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.58 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505070 SAMN31395972 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187256/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.58 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505071 SAMN31395971 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187260/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.87 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505072 SAMN31396294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX42187261/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.82 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505073 SAMN31396197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256110/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505074 SAMN31396196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256124/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505075 SAMN31396031 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TN-CDC-QDX42256130/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505076 SAMN31396342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256135/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505077 SAMN31396195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256138/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505078 SAMN31396341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256140/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505079 SAMN31396340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256143/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505080 SAMN31396339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256151/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505081 SAMN31396338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256166/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505082 SAMN31396337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256167/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505083 SAMN31396030 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TN-CDC-QDX42256174/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505084 SAMN31396194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256179/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505085 SAMN31396034 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42256181/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505086 SAMN31396193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256183/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505087 SAMN31396192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256190/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505088 SAMN31396191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256192/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505089 SAMN31396190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256204/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505090 SAMN31396029 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TN-CDC-QDX42256208/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505091 SAMN31396189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256211/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505092 SAMN31396188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256214/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505093 SAMN31396336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256220/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505094 SAMN31396335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256223/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505095 SAMN31396187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256233/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505096 SAMN31396186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256234/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505097 SAMN31396076 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42256251/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505098 SAMN31396064 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256271/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505099 SAMN31396175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256268/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505100 SAMN31396105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256286/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505101 SAMN31396104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256287/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505102 SAMN31396103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256296/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505103 SAMN31396063 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256302/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505104 SAMN31396358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/DE-CDC-QDX42256303/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505105 SAMN31396172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256519/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505106 SAMN31396171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256521/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505107 SAMN31396170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256528/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505108 SAMN31396169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256533/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505109 SAMN31396168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256535/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505110 SAMN31396167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256536/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505111 SAMN31396095 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256540/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505112 SAMN31396094 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256541/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505113 SAMN31396058 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256546/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505114 SAMN31396093 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256551/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505115 SAMN31396166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256555/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505116 SAMN31396165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256557/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505117 SAMN31396057 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256570/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505118 SAMN31396056 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256575/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505119 SAMN31396055 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256581/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505120 SAMN31396092 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256584/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505121 SAMN31396091 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256605/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505122 SAMN31396054 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256615/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505123 SAMN31396164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256620/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505124 SAMN31396053 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256621/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505125 SAMN31396052 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256623/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name CA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505126 SAMN31396051 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256627/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505127 SAMN31396284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256637/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505128 SAMN31396283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256642/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.2.75.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505129 SAMN31396050 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256645/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505130 SAMN31396049 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256646/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505131 SAMN31396048 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256647/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505132 SAMN31395954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256661/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505133 SAMN31396282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256669/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505134 SAMN31396281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256675/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505136 SAMN31396279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256678/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505137 SAMN31396090 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256682/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505138 SAMN31396163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256683/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505139 SAMN31395953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256687/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505140 SAMN31395951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256694/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505141 SAMN31395952 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256692/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505142 SAMN31396278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256708/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505143 SAMN31395950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256724/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505144 SAMN31395949 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256725/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505145 SAMN31396277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256728/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505146 SAMN31396276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256732/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505147 SAMN31396275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256736/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505148 SAMN31395948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256739/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505149 SAMN31396089 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256758/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BE.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505150 SAMN31396162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256759/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505151 SAMN31396161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256760/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505152 SAMN31396047 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256762/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505154 SAMN31396045 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256766/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505156 SAMN31396044 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256770/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505158 SAMN31396364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42256783/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505160 SAMN31396184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256793/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505162 SAMN31396182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256801/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505164 SAMN31396180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256810/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505166 SAMN31396178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256818/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505168 SAMN31396220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256829/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505170 SAMN31396109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256969/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505172 SAMN31396107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256979/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505174 SAMN31396208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42257084/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505176 SAMN31396327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257247/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505178 SAMN31396325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257251/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505180 SAMN31396324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257259/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505182 SAMN31396322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257270/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505184 SAMN31396320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257278/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505186 SAMN31396298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX42257296/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505188 SAMN31396317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257301/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505190 SAMN31396315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257308/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505192 SAMN31395928 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX42257343/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505194 SAMN31396253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257353/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505196 SAMN31396075 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257404/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505198 SAMN31396073 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257420/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505135 SAMN31396280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256676/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505153 SAMN31396046 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256765/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505155 SAMN31396088 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256767/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505157 SAMN31396043 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256773/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505159 SAMN31396185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256791/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505161 SAMN31396183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256799/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505163 SAMN31396181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256809/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505165 SAMN31396179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256817/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505167 SAMN31396329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42256821/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505169 SAMN31396110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256966/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505171 SAMN31396108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256975/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505173 SAMN31396106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256980/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505175 SAMN31396359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42257156/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505177 SAMN31396326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257249/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505179 SAMN31395932 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX42257254/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505181 SAMN31396323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257268/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505183 SAMN31396321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257276/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505185 SAMN31396319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257284/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505187 SAMN31396318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257298/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505189 SAMN31396316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257304/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505191 SAMN31396314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257309/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505193 SAMN31396295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX42257384/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505195 SAMN31396252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257398/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505197 SAMN31396074 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257411/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505199 SAMN31396072 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257423/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505200 SAMN31396071 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257426/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.4.6.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505201 SAMN31396304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257576/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505202 SAMN31396303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257577/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505203 SAMN31396302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257613/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505204 SAMN31396226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257618/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505205 SAMN31396301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257619/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505206 SAMN31396300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257627/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505207 SAMN31396225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257716/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505208 SAMN31396224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257725/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BL.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505209 SAMN31396299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257731/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505210 SAMN31396239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257745/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505211 SAMN31396238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257751/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505212 SAMN31396066 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257757/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505213 SAMN31396237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257759/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505214 SAMN31396236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257760/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505215 SAMN31396065 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257765/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505216 SAMN31396235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257771/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505217 SAMN31396234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257772/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505218 SAMN31396233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257779/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505219 SAMN31396232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257780/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505220 SAMN31396231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257786/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505221 SAMN31395947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300164/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505222 SAMN31395946 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300170/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505223 SAMN31395945 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300178/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505224 SAMN31395944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300180/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505225 SAMN31395943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300181/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505226 SAMN31395942 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300187/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505227 SAMN31395941 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300191/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505228 SAMN31396274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300202/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505229 SAMN31396272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300226/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.1.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505230 SAMN31396273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300204/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505231 SAMN31396271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300233/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505232 SAMN31396270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300237/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505233 SAMN31396411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187121/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505234 SAMN31396410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AZ-CDC-QDX42187123/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505235 SAMN31396125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX42187125/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.05 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505236 SAMN31396124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX42187126/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race AM IND ALSK NTV collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.09 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505237 SAMN31396123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NM-CDC-QDX42187127/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.38 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505238 SAMN31396028 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187128/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.73 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505239 SAMN31396027 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187129/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.1 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505240 SAMN31396026 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187130/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.63 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505241 SAMN31396025 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187131/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.9 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505242 SAMN31396024 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187132/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.24 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505243 SAMN31396023 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187133/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.7 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505244 SAMN31396021 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187138/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.67 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505245 SAMN31396022 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187134/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23.17 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505246 SAMN31396020 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187139/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.87 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505247 SAMN31396019 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187140/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.69 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505248 SAMN31396018 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187142/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.62 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505249 SAMN31396017 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187149/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.92 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505250 SAMN31396016 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187153/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.32 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505251 SAMN31396015 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187156/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.21 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505252 SAMN31396014 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187157/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.64 lineage/clade name BF.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505253 SAMN31396013 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187160/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14.92 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505254 SAMN31396012 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187164/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.85 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505255 SAMN31396011 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187169/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.82 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505256 SAMN31396010 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187173/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.64 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505257 SAMN31396009 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187175/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.1 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505258 SAMN31396008 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187176/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.42 lineage/clade name BA.5.1.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505259 SAMN31396007 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187177/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.45 lineage/clade name BA.5.2.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505260 SAMN31396006 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187178/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.93 lineage/clade name BA.5.2.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505261 SAMN31396004 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187184/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.26 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505262 SAMN31396005 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187183/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.34 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505263 SAMN31396003 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187185/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.75 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505264 SAMN31396002 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187186/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-01 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.95 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505265 SAMN31396102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256321/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505266 SAMN31396062 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256329/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505267 SAMN31395964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256345/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505268 SAMN31395963 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256347/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505269 SAMN31395962 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256348/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505270 SAMN31396292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256351/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BE.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505271 SAMN31396291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256366/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 14 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505272 SAMN31396290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256367/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505273 SAMN31395961 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256371/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505274 SAMN31396289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256374/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505275 SAMN31396288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256378/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BE.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505276 SAMN31396287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256381/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505277 SAMN31395960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256385/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505278 SAMN31395959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256395/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BW.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505279 SAMN31396286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256398/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BR.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505280 SAMN31396285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42256409/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505281 SAMN31395958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256412/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505282 SAMN31395957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256424/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505283 SAMN31396357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/DE-CDC-QDX42256422/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505284 SAMN31395956 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256425/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505285 SAMN31396061 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256433/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505286 SAMN31396101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256435/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505287 SAMN31396100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256436/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505288 SAMN31395955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42256440/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505289 SAMN31396174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256452/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505290 SAMN31396099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256457/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505291 SAMN31396098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256466/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505292 SAMN31396097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256467/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505293 SAMN31396060 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256487/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505294 SAMN31396059 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX42256488/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BM.4.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505295 SAMN31396096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX42256494/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505296 SAMN31396173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42256501/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505297 SAMN31396313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257435/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505298 SAMN31395931 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX42257436/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505299 SAMN31396312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257437/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505300 SAMN31395930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX42257438/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505301 SAMN31396311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257442/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505302 SAMN31396310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257457/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505303 SAMN31396309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257461/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505304 SAMN31396308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257468/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505305 SAMN31396307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257478/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505306 SAMN31396306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257480/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505307 SAMN31396305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42257483/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505308 SAMN31396229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257487/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505309 SAMN31395929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX42257491/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505310 SAMN31396228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257493/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505311 SAMN31396227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42257495/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505312 SAMN31396251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257500/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505313 SAMN31396250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257502/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505314 SAMN31396249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257510/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505315 SAMN31395927 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WV-CDC-QDX42257519/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505316 SAMN31396248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257523/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505317 SAMN31396247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257528/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505318 SAMN31396246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257530/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505319 SAMN31396245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257536/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505320 SAMN31396070 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257538/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505321 SAMN31396244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257546/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505322 SAMN31396069 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257550/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505323 SAMN31396068 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257552/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505324 SAMN31396243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257554/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505325 SAMN31396242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257557/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505326 SAMN31396241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257558/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505327 SAMN31396240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42257561/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505328 SAMN31396067 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42257568/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505329 SAMN31396131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300328/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505330 SAMN31396130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300331/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505331 SAMN31396128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300338/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505332 SAMN31396129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300336/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505333 SAMN31396127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300348/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505334 SAMN31396126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300349/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 24 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505335 SAMN31395939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300352/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505336 SAMN31395938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300353/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505337 SAMN31396267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300355/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505338 SAMN31396266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300358/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 26 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505339 SAMN31396265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300359/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 21 lineage/clade name BM.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505340 SAMN31396264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300362/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505341 SAMN31396263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300363/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 22 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505342 SAMN31396262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300365/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505343 SAMN31396261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300380/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505344 SAMN31396260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300387/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505345 SAMN31396259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300390/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505346 SAMN31395937 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300394/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505347 SAMN31395936 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300400/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505348 SAMN31396258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300410/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505349 SAMN31396257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300411/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505350 SAMN31395935 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300415/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 16 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505351 SAMN31396256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300428/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505352 SAMN31395934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300444/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505353 SAMN31396397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300458/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505354 SAMN31396396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300461/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 27 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505355 SAMN31396395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300464/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 26 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505356 SAMN31396394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300467/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505357 SAMN31396393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300469/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505358 SAMN31396392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300474/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505359 SAMN31396391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300477/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505360 SAMN31396390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300485/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505361 SAMN31395970 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187262/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.08 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505362 SAMN31395969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187263/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.34 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505363 SAMN31395968 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187264/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.84 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505364 SAMN31395967 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187269/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.66 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505365 SAMN31395966 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187274/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.55 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505366 SAMN31395965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TX-CDC-QDX42187275/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-02 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.18 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505367 SAMN31396293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/LA-CDC-QDX42187276/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-03 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.34 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505368 SAMN31396356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42254020/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505369 SAMN31396355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42254021/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505370 SAMN31396354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42254025/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505371 SAMN31396033 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TN-CDC-QDX42254035/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505372 SAMN31396353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42254032/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505373 SAMN31396087 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254060/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15.82 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505374 SAMN31396032 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/TN-CDC-QDX42254049/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505375 SAMN31396223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42254066/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.33 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505376 SAMN31396297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX42254073/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24.09 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505377 SAMN31396222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42254076/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.77 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505378 SAMN31396221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42254082/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22.85 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505379 SAMN31396333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42254083/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.27 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505380 SAMN31395933 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX42254113/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18.21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505381 SAMN31396332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42254118/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21.66 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505382 SAMN31396331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42254119/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.61 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505383 SAMN31396330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42254132/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.62 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505384 SAMN31396086 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254141/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.16 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505385 SAMN31396230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX42254133/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17.27 lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505386 SAMN31396085 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254146/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.96 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505387 SAMN31396255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42254148/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.54 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505388 SAMN31396254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX42254150/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20.59 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505389 SAMN31396084 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254152/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.14 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505390 SAMN31396083 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254158/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.34 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505391 SAMN31396082 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254160/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.59 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505392 SAMN31396081 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254167/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16.66 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505393 SAMN31396389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300486/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505394 SAMN31396388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300491/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.2.75.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505395 SAMN31396387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300492/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505396 SAMN31396334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42300493/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505397 SAMN31396386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300495/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505398 SAMN31396385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300496/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505399 SAMN31396384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300498/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 15 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505400 SAMN31396383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300500/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505401 SAMN31396382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300501/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505402 SAMN31396381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300503/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505403 SAMN31396379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300508/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505404 SAMN31396380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300505/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505405 SAMN31396378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300510/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505406 SAMN31396377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300512/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505407 SAMN31396376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300513/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505408 SAMN31396375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300518/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505409 SAMN31396374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300521/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505410 SAMN31396373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300523/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505411 SAMN31396372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300526/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 14 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505412 SAMN31396371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300529/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505413 SAMN31396370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300530/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505414 SAMN31396369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300538/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505415 SAMN31396368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300540/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 28 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505416 SAMN31396367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300562/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 16 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505417 SAMN31396366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300572/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505418 SAMN31396365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX42300574/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 13 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505419 SAMN31396080 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254168/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.34 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505420 SAMN31396079 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254170/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.79 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505421 SAMN31396078 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254171/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19.6 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505422 SAMN31396077 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX42254177/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25.49 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505423 SAMN31396352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255880/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505424 SAMN31396351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255884/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505425 SAMN31396350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255899/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505426 SAMN31396042 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42255914/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505427 SAMN31396041 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42255918/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505428 SAMN31396207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42255932/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505429 SAMN31396040 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42255939/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505430 SAMN31396349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255950/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505431 SAMN31396206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42255958/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505432 SAMN31396205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42255970/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505433 SAMN31396348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255959/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-04 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505434 SAMN31396204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42255972/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505435 SAMN31396039 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42255974/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505436 SAMN31396347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255990/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505437 SAMN31396346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42255994/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505438 SAMN31396345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256019/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505439 SAMN31396038 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42256026/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505440 SAMN31396203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256043/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505441 SAMN31396037 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42256047/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505442 SAMN31396036 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42256048/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505443 SAMN31396344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256058/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505444 SAMN31396035 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/SC-CDC-QDX42256065/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505445 SAMN31396202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256066/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505446 SAMN31396201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256068/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505447 SAMN31396343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/GA-CDC-QDX42256070/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505448 SAMN31396200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256075/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505449 SAMN31396199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256084/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505450 SAMN31396198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256108/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505451 SAMN31396219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256831/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505452 SAMN31396218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256834/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505453 SAMN31396177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256853/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505454 SAMN31396363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42256855/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-05 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505455 SAMN31396217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256858/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505456 SAMN31396362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42256875/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505457 SAMN31396216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256880/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BE.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505458 SAMN31396361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42256876/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505459 SAMN31396215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256881/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505460 SAMN31396214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256883/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505461 SAMN31396213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256890/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505462 SAMN31396432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX42256891/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505463 SAMN31396212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256892/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-06 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505464 SAMN31396328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX42256899/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505465 SAMN31396296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX42256895/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505466 SAMN31396210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256908/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505467 SAMN31396211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256903/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505468 SAMN31396360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX42256912/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505469 SAMN31396209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX42256924/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505470 SAMN31396176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NC-CDC-QDX42256930/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505471 SAMN31396122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256936/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505472 SAMN31396120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256944/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505473 SAMN31396121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256937/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505474 SAMN31396119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256945/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505475 SAMN31396118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256948/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505476 SAMN31396117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256951/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505477 SAMN31396116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256952/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505478 SAMN31396115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256953/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-07 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505479 SAMN31396114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256956/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505480 SAMN31396113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256957/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505481 SAMN31396112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256961/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505482 SAMN31396111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX42256963/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505483 SAMN31396269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300246/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505484 SAMN31396268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX42300247/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505485 SAMN31395940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX42300248/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-08 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505486 SAMN31396160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300251/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name BE.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505487 SAMN31396158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300262/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505488 SAMN31396159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300253/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505489 SAMN31396157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300265/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505490 SAMN31396156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300266/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505491 SAMN31396155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300269/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505492 SAMN31396154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300274/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505493 SAMN31396153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300276/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 25 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505494 SAMN31396152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300278/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505495 SAMN31396151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300279/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505496 SAMN31396150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300280/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 18 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505497 SAMN31396149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300281/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505498 SAMN31396148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300282/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505499 SAMN31396147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300288/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 22 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505500 SAMN31396146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300289/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 16 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505501 SAMN31396145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300291/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 19 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505502 SAMN31396144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300292/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 19 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505503 SAMN31396143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300303/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505504 SAMN31396142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300305/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505505 SAMN31396141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300309/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505506 SAMN31396140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300310/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505507 SAMN31396138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300313/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505508 SAMN31396139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300312/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505509 SAMN31396137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300316/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505510 SAMN31396136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300319/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505511 SAMN31396135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300323/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505512 SAMN31396134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300324/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505513 SAMN31396132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300327/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15505514 SAMN31396133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX42300325/2022 collected_by Quest Diagnostics Incorporated collection_date 2022-10-09 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated