<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX18012574" alias="GSM6675135_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012574</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675135_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675135: root nodules, MG112 Non-Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521239">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521239</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675135</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675135</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012575" alias="GSM6675136_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012575</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675136_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675136: root nodules, MG112 Non-Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521241">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521241</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675136</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675136</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012576" alias="GSM6675108_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012576</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675108_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675108: root nodules, MG136 Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521240">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521240</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675108</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675108</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012577" alias="GSM6675109_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012577</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675109_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675109: root nodules, MG115 Non-Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521242">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521242</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675109</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675109</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012578" alias="GSM6675110_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012578</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675110_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675110: root nodules, MG9 Non-Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521243">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521243</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675110</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675110</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012579" alias="GSM6675111_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012579</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675111_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675111: root nodules, MG79 Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521244">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521244</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675111</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675111</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012580" alias="GSM6675112_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012580</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675112_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675112: root nodules, MG112 Non-Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521245">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521245</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675112</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675112</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012581" alias="GSM6675116_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012581</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675116_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675116: root nodules, MG115 Non-Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521246">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521246</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675116</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675116</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012582" alias="GSM6675115_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012582</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675115_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675115: root nodules, MG9 Non-Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521247">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521247</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675115</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675115</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012583" alias="GSM6675114_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012583</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675114_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675114: root nodules, MG136 Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521248">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521248</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675114</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675114</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012584" alias="GSM6675113_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012584</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675113_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675113: root nodules, MG9 Non-Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521250">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521250</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675113</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675113</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012585" alias="GSM6675124_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012585</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675124_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675124: root nodules, MG112 Non-Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521249">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521249</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675124</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675124</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012586" alias="GSM6675123_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012586</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675123_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675123: root nodules, MG79 Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521251">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521251</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675123</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675123</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012587" alias="GSM6675122_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012587</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675122_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675122: root nodules, MG70 Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521253">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521253</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675122</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675122</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012588" alias="GSM6675121_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012588</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675121_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675121: root nodules, MG70 Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521252">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521252</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675121</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675121</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012589" alias="GSM6675120_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012589</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675120_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675120: root nodules, MG115 Non-Infected, rep 2; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521254">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521254</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675120</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675120</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012590" alias="GSM6675119_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012590</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675119_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675119: root nodules, MG79 Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521256">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521256</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675119</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675119</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012591" alias="GSM6675118_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012591</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675118_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675118: root nodules, MG112 Non-Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521255">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521255</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675118</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675118</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012592" alias="GSM6675117_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012592</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675117_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675117: root nodules, MG9 Non-Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521257">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521257</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675117</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675117</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012593" alias="GSM6675125_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012593</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675125_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675125: root nodules, MG136 Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521258">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521258</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675125</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675125</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012594" alias="GSM6675126_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012594</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675126_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675126: root nodules, MG136 Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521259">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521259</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675126</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675126</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012595" alias="GSM6675127_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012595</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675127_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675127: root nodules, MG70 Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521260">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521260</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675127</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675127</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012596" alias="GSM6675128_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012596</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675128_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675128: root nodules, MG136 Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521261">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521261</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675128</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675128</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012597" alias="GSM6675130_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012597</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675130_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675130: root nodules, MG9 Non-Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521262">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521262</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675130</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675130</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012598" alias="GSM6675131_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012598</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675131_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675131: root nodules, MG115 Non-Infected, rep 1; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521263">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521263</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675131</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675131</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012599" alias="GSM6675132_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012599</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675132_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675132: root nodules, MG9 Non-Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521264">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521264</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675132</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675132</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012600" alias="GSM6675133_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012600</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675133_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675133: root nodules, MG79 Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521265">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521265</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675133</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675133</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012601" alias="GSM6675134_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012601</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675134_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675134: root nodules, MG70 Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521266">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521266</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675134</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675134</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012602" alias="GSM6675137_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012602</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675137_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675137: root nodules, MG79 Infected, rep 5; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521267">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521267</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675137</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675137</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012603" alias="GSM6675138_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012603</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675138_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675138: root nodules, MG70 Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521268">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521268</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675138</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675138</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012604" alias="GSM6675139_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012604</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675139_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675139: root nodules, MG115 Non-Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521269">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521269</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675139</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675139</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012605" alias="GSM6675129_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012605</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675129_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675129: root nodules, MG79 Infected, rep 4; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521270">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521270</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675129</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675129</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012606" alias="GSM6675142_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012606</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675142_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675142: root nodules, MG115 Non-Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521271">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521271</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675142</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675142</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012607" alias="GSM6675143_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012607</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675143_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675143: root nodules, MG112 Non-Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521272">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521272</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675143</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675143</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012608" alias="GSM6675140_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012608</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675140_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675140: root nodules, MG136 Infected, rep 6; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521273">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521273</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675140</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675140</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18012609" alias="GSM6675141_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18012609</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6675141_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6675141: root nodules, MG70 Infected, rep 3; Lotus japonicus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP404359">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP404359</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA894115</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15521274">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15521274</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6675141</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6675141</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Six biological replicates were collected for each accession (Infected: MG-70, MG-79, MG-136; Non-infected: MG-9, MG-112, MG-115). Each biological replicate comprised 20 nodules from at least 5 different plants. Nodules were harvested 5 wpi. Total RNA was extracted using the SpectrumTM Plant Total RNA kit (Sigma-Aldrich) according to the manufacturer's instructions and treated with DNAse I (Ambion) prime-seq RNA-sequencing poly A enrichment, three prime counting</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 1500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
