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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315094" alias="QDX43165117"> <IDENTIFIERS> <PRIMARY_ID>SRX18315094</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165117</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805721"> <IDENTIFIERS> <PRIMARY_ID>SRS15805721</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165117/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315095" alias="QDX43165118"> <IDENTIFIERS> <PRIMARY_ID>SRX18315095</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165118</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805722"> <IDENTIFIERS> <PRIMARY_ID>SRS15805722</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165118/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315096" alias="QDX43165122"> <IDENTIFIERS> <PRIMARY_ID>SRX18315096</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165122</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805723"> <IDENTIFIERS> <PRIMARY_ID>SRS15805723</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165122/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315097" alias="QDX43165124"> <IDENTIFIERS> <PRIMARY_ID>SRX18315097</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165124</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805724"> <IDENTIFIERS> <PRIMARY_ID>SRS15805724</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165124/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315098" alias="QDX43165126"> <IDENTIFIERS> <PRIMARY_ID>SRX18315098</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165126</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805725"> <IDENTIFIERS> <PRIMARY_ID>SRS15805725</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165126/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315099" alias="QDX43165127"> <IDENTIFIERS> <PRIMARY_ID>SRX18315099</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165127</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805726"> <IDENTIFIERS> <PRIMARY_ID>SRS15805726</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165127/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315100" alias="QDX43165130"> <IDENTIFIERS> <PRIMARY_ID>SRX18315100</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165130</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805727"> <IDENTIFIERS> <PRIMARY_ID>SRS15805727</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165130/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315101" alias="QDX43165131"> <IDENTIFIERS> <PRIMARY_ID>SRX18315101</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165131</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805728"> <IDENTIFIERS> <PRIMARY_ID>SRS15805728</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165131/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315103" alias="QDX43165133"> <IDENTIFIERS> <PRIMARY_ID>SRX18315103</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165133</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805730"> <IDENTIFIERS> <PRIMARY_ID>SRS15805730</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165133/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315104" alias="QDX43165135"> <IDENTIFIERS> <PRIMARY_ID>SRX18315104</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165135</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805732"> <IDENTIFIERS> <PRIMARY_ID>SRS15805732</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165136/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315106" alias="QDX43165138"> <IDENTIFIERS> <PRIMARY_ID>SRX18315106</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165138</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805733"> <IDENTIFIERS> <PRIMARY_ID>SRS15805733</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165138/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315107" alias="QDX43165139"> <IDENTIFIERS> <PRIMARY_ID>SRX18315107</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165139</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805734"> <IDENTIFIERS> <PRIMARY_ID>SRS15805734</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165139/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315108" alias="QDX43165140"> <IDENTIFIERS> <PRIMARY_ID>SRX18315108</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165140</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805735"> <IDENTIFIERS> <PRIMARY_ID>SRS15805735</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165140/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805740"> <IDENTIFIERS> <PRIMARY_ID>SRS15805740</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165148/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315114" alias="QDX43165149"> <IDENTIFIERS> <PRIMARY_ID>SRX18315114</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165149</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805741"> <IDENTIFIERS> <PRIMARY_ID>SRS15805741</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165149/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315115" alias="QDX43165150"> <IDENTIFIERS> <PRIMARY_ID>SRX18315115</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165150</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805742"> <IDENTIFIERS> <PRIMARY_ID>SRS15805742</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165150/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315116" alias="QDX43165151"> <IDENTIFIERS> <PRIMARY_ID>SRX18315116</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165151</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805743"> <IDENTIFIERS> <PRIMARY_ID>SRS15805743</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NM-CDC-QDX43165151/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805749"> <IDENTIFIERS> <PRIMARY_ID>SRS15805749</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165254/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315123" alias="QDX43165255"> <IDENTIFIERS> <PRIMARY_ID>SRX18315123</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165255</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805750"> <IDENTIFIERS> <PRIMARY_ID>SRS15805750</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165255/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315124" alias="QDX43165256"> <IDENTIFIERS> <PRIMARY_ID>SRX18315124</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165256</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805751"> <IDENTIFIERS> <PRIMARY_ID>SRS15805751</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165256/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805817"> <IDENTIFIERS> <PRIMARY_ID>SRS15805817</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211936/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315191" alias="QDX43211938"> <IDENTIFIERS> <PRIMARY_ID>SRX18315191</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211938</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805818"> <IDENTIFIERS> <PRIMARY_ID>SRS15805818</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211938/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315193" alias="QDX43211949"> <IDENTIFIERS> <PRIMARY_ID>SRX18315193</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211949</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805819"> <IDENTIFIERS> <PRIMARY_ID>SRS15805819</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211949/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315194" alias="QDX43211960"> <IDENTIFIERS> <PRIMARY_ID>SRX18315194</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211960</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805821"> <IDENTIFIERS> <PRIMARY_ID>SRS15805821</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211960/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315196" alias="QDX43211964"> <IDENTIFIERS> <PRIMARY_ID>SRX18315196</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211964</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805822"> <IDENTIFIERS> <PRIMARY_ID>SRS15805822</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805826"> <IDENTIFIERS> <PRIMARY_ID>SRS15805826</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211968/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315200" alias="QDX43211972"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315201" alias="QDX43211973"> <IDENTIFIERS> <PRIMARY_ID>SRX18315201</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211973</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805828"> <IDENTIFIERS> <PRIMARY_ID>SRS15805828</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211973/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315203" alias="QDX43211976"> <IDENTIFIERS> <PRIMARY_ID>SRX18315203</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211976</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805830"> <IDENTIFIERS> <PRIMARY_ID>SRS15805830</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211976/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805851"> <IDENTIFIERS> <PRIMARY_ID>SRS15805851</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212211/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315225" alias="QDX43212212"> <IDENTIFIERS> <PRIMARY_ID>SRX18315225</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212212</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805852"> <IDENTIFIERS> <PRIMARY_ID>SRS15805852</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212212/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315227" alias="QDX43212221"> <IDENTIFIERS> <PRIMARY_ID>SRX18315227</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212221</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805854"> <IDENTIFIERS> <PRIMARY_ID>SRS15805854</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212221/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315228" alias="QDX43212222"> <IDENTIFIERS> <PRIMARY_ID>SRX18315228</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212222</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805855"> <IDENTIFIERS> <PRIMARY_ID>SRS15805855</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212222/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805860"> <IDENTIFIERS> <PRIMARY_ID>SRS15805860</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212234/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315234" alias="QDX43212235"> <IDENTIFIERS> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315244" alias="QDX43293587"> <IDENTIFIERS> <PRIMARY_ID>SRX18315244</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43293587</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805871"> <IDENTIFIERS> <PRIMARY_ID>SRS15805871</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX43293587/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805885"> <IDENTIFIERS> <PRIMARY_ID>SRS15805885</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX43293726/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315259" alias="QDX43293729"> <IDENTIFIERS> <PRIMARY_ID>SRX18315259</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43293729</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805886"> <IDENTIFIERS> <PRIMARY_ID>SRS15805886</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX43293729/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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namespace="CDC-OAMD">QDX43116309</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805920"> <IDENTIFIERS> <PRIMARY_ID>SRS15805920</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/GA-CDC-QDX43116309/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806047"> <IDENTIFIERS> <PRIMARY_ID>SRS15806047</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165100/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315421" alias="QDX43165101"> <IDENTIFIERS> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806081"> <IDENTIFIERS> <PRIMARY_ID>SRS15806081</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43165597/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315455" alias="QDX43165598"> <IDENTIFIERS> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315465" alias="QDX43211837"> <IDENTIFIERS> <PRIMARY_ID>SRX18315465</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211837</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806092"> <IDENTIFIERS> <PRIMARY_ID>SRS15806092</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43211837/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315468" alias="QDX43211843"> <IDENTIFIERS> <PRIMARY_ID>SRX18315468</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211843</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806095"> <IDENTIFIERS> <PRIMARY_ID>SRS15806095</PRIMARY_ID> <EXTERNAL_ID 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<SAMPLE_DESCRIPTOR accession="SRS15806097"> <IDENTIFIERS> <PRIMARY_ID>SRS15806097</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211845/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315470" alias="QDX43211853"> <IDENTIFIERS> <PRIMARY_ID>SRX18315470</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211853</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806096"> <IDENTIFIERS> <PRIMARY_ID>SRS15806096</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211853/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315471" alias="QDX43211856"> <IDENTIFIERS> <PRIMARY_ID>SRX18315471</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211856</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806098"> <IDENTIFIERS> <PRIMARY_ID>SRS15806098</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211856/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315472" alias="QDX43211861"> <IDENTIFIERS> <PRIMARY_ID>SRX18315472</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211861</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806099"> <IDENTIFIERS> <PRIMARY_ID>SRS15806099</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211861/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315473" alias="QDX43211862"> <IDENTIFIERS> <PRIMARY_ID>SRX18315473</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211862</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806100"> <IDENTIFIERS> <PRIMARY_ID>SRS15806100</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211862/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315475" alias="QDX43211866"> <IDENTIFIERS> <PRIMARY_ID>SRX18315475</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211866</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806102"> <IDENTIFIERS> <PRIMARY_ID>SRS15806102</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211866/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806106"> <IDENTIFIERS> <PRIMARY_ID>SRS15806106</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211877/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315480" alias="QDX43211881"> <IDENTIFIERS> <PRIMARY_ID>SRX18315480</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211881</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806107"> <IDENTIFIERS> <PRIMARY_ID>SRS15806107</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43211881/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315481" alias="QDX43211888"> <IDENTIFIERS> <PRIMARY_ID>SRX18315481</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211888</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806108"> <IDENTIFIERS> <PRIMARY_ID>SRS15806108</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211888/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315482" alias="QDX43211891"> <IDENTIFIERS> <PRIMARY_ID>SRX18315482</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211891</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806109"> <IDENTIFIERS> <PRIMARY_ID>SRS15806109</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211891/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315483" alias="QDX43211897"> <IDENTIFIERS> <PRIMARY_ID>SRX18315483</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211897</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806110"> <IDENTIFIERS> <PRIMARY_ID>SRS15806110</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211897/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315485" alias="QDX43211901"> <IDENTIFIERS> <PRIMARY_ID>SRX18315485</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211901</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806112"> <IDENTIFIERS> <PRIMARY_ID>SRS15806112</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211901/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315486" alias="QDX43211905"> <IDENTIFIERS> <PRIMARY_ID>SRX18315486</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211905</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806113"> <IDENTIFIERS> <PRIMARY_ID>SRS15806113</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211905/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315487" alias="QDX43211907"> <IDENTIFIERS> <PRIMARY_ID>SRX18315487</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211907</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806114"> <IDENTIFIERS> <PRIMARY_ID>SRS15806114</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211907/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315488" alias="QDX43212012"> <IDENTIFIERS> <PRIMARY_ID>SRX18315488</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212012</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806115"> <IDENTIFIERS> <PRIMARY_ID>SRS15806115</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212012/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315489" alias="QDX43212015"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315490" alias="QDX43212024"> <IDENTIFIERS> <PRIMARY_ID>SRX18315490</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212024</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806117"> <IDENTIFIERS> <PRIMARY_ID>SRS15806117</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212024/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315492" alias="QDX43212032"> <IDENTIFIERS> <PRIMARY_ID>SRX18315492</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212032</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806119"> <IDENTIFIERS> <PRIMARY_ID>SRS15806119</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43212032/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315499" alias="QDX43212052"> <IDENTIFIERS> <PRIMARY_ID>SRX18315499</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212052</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806126"> <IDENTIFIERS> <PRIMARY_ID>SRS15806126</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212052/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806132"> <IDENTIFIERS> <PRIMARY_ID>SRS15806132</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212087/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315506" alias="QDX43212088"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315507" alias="QDX43212089"> <IDENTIFIERS> <PRIMARY_ID>SRX18315507</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212089</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806134"> <IDENTIFIERS> <PRIMARY_ID>SRS15806134</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212089/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315509" alias="QDX43212096"> <IDENTIFIERS> <PRIMARY_ID>SRX18315509</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212096</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806136"> <IDENTIFIERS> <PRIMARY_ID>SRS15806136</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43212096/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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namespace="CDC-OAMD">QDX43292742</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806158"> <IDENTIFIERS> <PRIMARY_ID>SRS15806158</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292742/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315533" alias="QDX43292747"> <IDENTIFIERS> <PRIMARY_ID>SRX18315533</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292747</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806160"> <IDENTIFIERS> <PRIMARY_ID>SRS15806160</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292747/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806174"> <IDENTIFIERS> <PRIMARY_ID>SRS15806174</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292806/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315548" alias="QDX43292810"> <IDENTIFIERS> <PRIMARY_ID>SRX18315548</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292810</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806175"> <IDENTIFIERS> <PRIMARY_ID>SRS15806175</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292810/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315549" alias="QDX43292815"> <IDENTIFIERS> <PRIMARY_ID>SRX18315549</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292815</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806176"> <IDENTIFIERS> <PRIMARY_ID>SRS15806176</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292815/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315550" alias="QDX43292822"> <IDENTIFIERS> <PRIMARY_ID>SRX18315550</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292822</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806177"> <IDENTIFIERS> <PRIMARY_ID>SRS15806177</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292822/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806183"> <IDENTIFIERS> <PRIMARY_ID>SRS15806183</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX43293483/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315557" alias="QDX43293484"> <IDENTIFIERS> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806191"> <IDENTIFIERS> <PRIMARY_ID>SRS15806191</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WV-CDC-QDX43293535/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315565" alias="QDX43293536"> <IDENTIFIERS> <PRIMARY_ID>SRX18315565</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43293536</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806192"> <IDENTIFIERS> <PRIMARY_ID>SRS15806192</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX43293536/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806200"> <IDENTIFIERS> <PRIMARY_ID>SRS15806200</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX43293546/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315574" alias="QDX43293548"> <IDENTIFIERS> 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namespace="CDC-OAMD">QDX43293579</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806209"> <IDENTIFIERS> <PRIMARY_ID>SRS15806209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX43293579/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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namespace="CDC-OAMD">QDX43165209</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806226"> <IDENTIFIERS> <PRIMARY_ID>SRS15806226</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165209/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806302"> <IDENTIFIERS> <PRIMARY_ID>SRS15806302</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211778/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315676" alias="QDX43211779"> <IDENTIFIERS> <PRIMARY_ID>SRX18315676</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211779</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806303"> <IDENTIFIERS> <PRIMARY_ID>SRS15806303</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211779/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315677" alias="QDX43211781"> <IDENTIFIERS> <PRIMARY_ID>SRX18315677</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211781</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806304"> <IDENTIFIERS> <PRIMARY_ID>SRS15806304</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211781/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806310"> <IDENTIFIERS> <PRIMARY_ID>SRS15806310</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211790/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315684" alias="QDX43211791"> <IDENTIFIERS> <PRIMARY_ID>SRX18315684</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211791</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806311"> <IDENTIFIERS> <PRIMARY_ID>SRS15806311</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211791/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315685" alias="QDX43211793"> <IDENTIFIERS> <PRIMARY_ID>SRX18315685</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211793</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806312"> <IDENTIFIERS> <PRIMARY_ID>SRS15806312</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211793/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315686" alias="QDX43211794"> <IDENTIFIERS> <PRIMARY_ID>SRX18315686</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211794</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806313"> <IDENTIFIERS> <PRIMARY_ID>SRS15806313</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211794/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<SAMPLE_DESCRIPTOR accession="SRS15806317"> <IDENTIFIERS> <PRIMARY_ID>SRS15806317</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211805/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315691" alias="QDX43211807"> <IDENTIFIERS> <PRIMARY_ID>SRX18315691</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211807</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806318"> <IDENTIFIERS> <PRIMARY_ID>SRS15806318</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211807/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315692" alias="QDX43212255"> <IDENTIFIERS> <PRIMARY_ID>SRX18315692</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212255</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806319"> <IDENTIFIERS> <PRIMARY_ID>SRS15806319</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212255/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315693" alias="QDX43212256"> <IDENTIFIERS> <PRIMARY_ID>SRX18315693</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212256</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806320"> <IDENTIFIERS> <PRIMARY_ID>SRS15806320</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212256/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315694" alias="QDX43212257"> <IDENTIFIERS> <PRIMARY_ID>SRX18315694</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212257</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806321"> <IDENTIFIERS> <PRIMARY_ID>SRS15806321</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212257/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315696" alias="QDX43212261"> <IDENTIFIERS> <PRIMARY_ID>SRX18315696</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212261</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806323"> <IDENTIFIERS> <PRIMARY_ID>SRS15806323</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212261/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212263/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315699" alias="QDX43212264"> <IDENTIFIERS> <PRIMARY_ID>SRX18315699</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212264</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806327"> <IDENTIFIERS> <PRIMARY_ID>SRS15806327</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212265/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315701" alias="QDX43212266"> <IDENTIFIERS> <PRIMARY_ID>SRX18315701</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212266</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806328"> <IDENTIFIERS> <PRIMARY_ID>SRS15806328</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212266/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315702" alias="QDX43212267"> <IDENTIFIERS> <PRIMARY_ID>SRX18315702</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212267</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806329"> <IDENTIFIERS> <PRIMARY_ID>SRS15806329</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212267/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315703" alias="QDX43212269"> <IDENTIFIERS> <PRIMARY_ID>SRX18315703</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212269</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806330"> <IDENTIFIERS> <PRIMARY_ID>SRS15806330</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212269/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806336"> <IDENTIFIERS> <PRIMARY_ID>SRS15806336</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212275/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315710" alias="QDX43212277"> <IDENTIFIERS> <PRIMARY_ID>SRX18315710</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212277</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806337"> <IDENTIFIERS> <PRIMARY_ID>SRS15806337</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212277/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315711" alias="QDX43212279"> <IDENTIFIERS> <PRIMARY_ID>SRX18315711</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212279</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806338"> <IDENTIFIERS> <PRIMARY_ID>SRS15806338</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212279/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806344"> <IDENTIFIERS> <PRIMARY_ID>SRS15806344</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212288/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315718" alias="QDX43212289"> <IDENTIFIERS> <PRIMARY_ID>SRX18315718</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212289</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806345"> <IDENTIFIERS> <PRIMARY_ID>SRS15806345</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212289/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315719" alias="QDX43212291"> <IDENTIFIERS> <PRIMARY_ID>SRX18315719</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212291</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806346"> <IDENTIFIERS> <PRIMARY_ID>SRS15806346</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212291/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212295/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315724" alias="QDX43292640"> <IDENTIFIERS> <PRIMARY_ID>SRX18315724</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292640</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806350"> <IDENTIFIERS> <PRIMARY_ID>SRS15806350</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292640/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315725" alias="QDX43292643"> <IDENTIFIERS> <PRIMARY_ID>SRX18315725</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292643</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806353"> <IDENTIFIERS> <PRIMARY_ID>SRS15806353</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292645/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315727" alias="QDX43292647"> <IDENTIFIERS> <PRIMARY_ID>SRX18315727</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292647</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806354"> <IDENTIFIERS> <PRIMARY_ID>SRS15806354</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292647/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315728" alias="QDX43292649"> <IDENTIFIERS> <PRIMARY_ID>SRX18315728</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292649</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806355"> <IDENTIFIERS> <PRIMARY_ID>SRS15806355</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292649/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292658/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315733" alias="QDX43292659"> <IDENTIFIERS> <PRIMARY_ID>SRX18315733</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292659</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806360"> <IDENTIFIERS> <PRIMARY_ID>SRS15806360</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292659/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315734" alias="QDX43292662"> <IDENTIFIERS> <PRIMARY_ID>SRX18315734</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292662</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806362"> <IDENTIFIERS> <PRIMARY_ID>SRS15806362</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292662/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315735" alias="QDX43292664"> <IDENTIFIERS> <PRIMARY_ID>SRX18315735</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292664</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806361"> <IDENTIFIERS> <PRIMARY_ID>SRS15806361</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292664/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<SAMPLE_DESCRIPTOR accession="SRS15806385"> <IDENTIFIERS> <PRIMARY_ID>SRS15806385</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX43293367/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315759" alias="QDX43293375"> <IDENTIFIERS> <PRIMARY_ID>SRX18315759</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43293375</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806387"> <IDENTIFIERS> <PRIMARY_ID>SRS15806387</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX43293382/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315761" alias="QDX43293385"> <IDENTIFIERS> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806514"> <IDENTIFIERS> <PRIMARY_ID>SRS15806514</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165185/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315888" alias="QDX43165186"> <IDENTIFIERS> <PRIMARY_ID>SRX18315888</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165186</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806515"> <IDENTIFIERS> <PRIMARY_ID>SRS15806515</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165186/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315889" alias="QDX43165189"> <IDENTIFIERS> <PRIMARY_ID>SRX18315889</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165189</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806516"> <IDENTIFIERS> <PRIMARY_ID>SRS15806516</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165189/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806608"> <IDENTIFIERS> <PRIMARY_ID>SRS15806608</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX43292447/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315982" alias="QDX43292613"> <IDENTIFIERS> 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accession="SRX18315991" alias="QDX43292628"> <IDENTIFIERS> <PRIMARY_ID>SRX18315991</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292628</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806617"> <IDENTIFIERS> <PRIMARY_ID>SRS15806617</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292628/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806625"> <IDENTIFIERS> <PRIMARY_ID>SRS15806625</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292834/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315999" alias="QDX43292840"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18316000" alias="QDX43292843"> <IDENTIFIERS> <PRIMARY_ID>SRX18316000</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292843</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806627"> <IDENTIFIERS> <PRIMARY_ID>SRS15806627</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292843/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<IDENTIFIERS> <PRIMARY_ID>SRX18314996</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43116324</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805623"> <IDENTIFIERS> <PRIMARY_ID>SRS15805623</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/GA-CDC-QDX43116324/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18314997" alias="QDX43116325"> <IDENTIFIERS> <PRIMARY_ID>SRX18314997</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43116325</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805624"> <IDENTIFIERS> <PRIMARY_ID>SRS15805624</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/GA-CDC-QDX43116325/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805630"> <IDENTIFIERS> <PRIMARY_ID>SRS15805630</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/GA-CDC-QDX43116350/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315004" alias="QDX43116353"> <IDENTIFIERS> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805681"> <IDENTIFIERS> <PRIMARY_ID>SRS15805681</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/GA-CDC-QDX43164566/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315055" alias="QDX43164567"> <IDENTIFIERS> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805689"> <IDENTIFIERS> <PRIMARY_ID>SRS15805689</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43164913/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315063" alias="QDX43164915"> <IDENTIFIERS> <PRIMARY_ID>SRX18315063</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315082" alias="QDX43164941"> <IDENTIFIERS> <PRIMARY_ID>SRX18315082</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43164941</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805709"> <IDENTIFIERS> <PRIMARY_ID>SRS15805709</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43164941/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315083" alias="QDX43164942"> <IDENTIFIERS> <PRIMARY_ID>SRX18315083</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43164942</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805710"> <IDENTIFIERS> <PRIMARY_ID>SRS15805710</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43164942/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<SAMPLE_DESCRIPTOR accession="SRS15805713"> <IDENTIFIERS> <PRIMARY_ID>SRS15805713</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43164949/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315087" alias="QDX43164972"> <IDENTIFIERS> <PRIMARY_ID>SRX18315087</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43164972</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805715"> <IDENTIFIERS> <PRIMARY_ID>SRS15805715</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165106/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315089" alias="QDX43165108"> <IDENTIFIERS> <PRIMARY_ID>SRX18315089</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165108</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805716"> <IDENTIFIERS> <PRIMARY_ID>SRS15805716</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165108/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315090" alias="QDX43165110"> <IDENTIFIERS> <PRIMARY_ID>SRX18315090</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165110</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805717"> <IDENTIFIERS> <PRIMARY_ID>SRS15805717</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165110/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805723"> <IDENTIFIERS> <PRIMARY_ID>SRS15805723</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165122/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315097" alias="QDX43165124"> <IDENTIFIERS> <PRIMARY_ID>SRX18315097</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315099" alias="QDX43165127"> <IDENTIFIERS> <PRIMARY_ID>SRX18315099</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165127</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805726"> <IDENTIFIERS> <PRIMARY_ID>SRS15805726</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165127/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805808"> <IDENTIFIERS> <PRIMARY_ID>SRS15805808</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AZ-CDC-QDX43211587/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315182" alias="QDX43211588"> <IDENTIFIERS> <PRIMARY_ID>SRX18315182</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211588</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805809"> <IDENTIFIERS> <PRIMARY_ID>SRS15805809</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AZ-CDC-QDX43211588/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315183" alias="QDX43211592"> <IDENTIFIERS> <PRIMARY_ID>SRX18315183</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211592</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805810"> <IDENTIFIERS> <PRIMARY_ID>SRS15805810</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AZ-CDC-QDX43211592/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315184" alias="QDX43211910"> <IDENTIFIERS> <PRIMARY_ID>SRX18315184</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211910</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805811"> <IDENTIFIERS> <PRIMARY_ID>SRS15805811</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211910/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805817"> <IDENTIFIERS> <PRIMARY_ID>SRS15805817</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211936/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315191" alias="QDX43211938"> <IDENTIFIERS> 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</LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315193" alias="QDX43211949"> <IDENTIFIERS> <PRIMARY_ID>SRX18315193</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211949</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805819"> <IDENTIFIERS> <PRIMARY_ID>SRS15805819</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211949/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315194" alias="QDX43211960"> <IDENTIFIERS> <PRIMARY_ID>SRX18315194</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211960</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805821"> <IDENTIFIERS> <PRIMARY_ID>SRS15805821</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211960/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315195" alias="QDX43211962"> <IDENTIFIERS> <PRIMARY_ID>SRX18315195</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211962</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805823"> <IDENTIFIERS> <PRIMARY_ID>SRS15805823</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211962/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315196" alias="QDX43211964"> <IDENTIFIERS> <PRIMARY_ID>SRX18315196</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211964</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805822"> <IDENTIFIERS> <PRIMARY_ID>SRS15805822</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211964/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315197" alias="QDX43211965"> <IDENTIFIERS> <PRIMARY_ID>SRX18315197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211965</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805824"> <IDENTIFIERS> <PRIMARY_ID>SRS15805824</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211965/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315198" alias="QDX43211966"> <IDENTIFIERS> <PRIMARY_ID>SRX18315198</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211966</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805825"> <IDENTIFIERS> <PRIMARY_ID>SRS15805825</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211966/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315199" alias="QDX43211968"> <IDENTIFIERS> <PRIMARY_ID>SRX18315199</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211968</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805826"> <IDENTIFIERS> <PRIMARY_ID>SRS15805826</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211968/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315200" alias="QDX43211972"> <IDENTIFIERS> <PRIMARY_ID>SRX18315200</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211972</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805827"> <IDENTIFIERS> <PRIMARY_ID>SRS15805827</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211972/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315201" alias="QDX43211973"> <IDENTIFIERS> <PRIMARY_ID>SRX18315201</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211973</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805828"> <IDENTIFIERS> <PRIMARY_ID>SRS15805828</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211973/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315202" alias="QDX43211974"> <IDENTIFIERS> <PRIMARY_ID>SRX18315202</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211974</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805829"> <IDENTIFIERS> <PRIMARY_ID>SRS15805829</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211974/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315203" alias="QDX43211976"> <IDENTIFIERS> <PRIMARY_ID>SRX18315203</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211976</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805830"> <IDENTIFIERS> <PRIMARY_ID>SRS15805830</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211976/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315204" alias="QDX43211980"> <IDENTIFIERS> <PRIMARY_ID>SRX18315204</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211980</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805831"> <IDENTIFIERS> <PRIMARY_ID>SRS15805831</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211980/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315205" alias="QDX43211983"> <IDENTIFIERS> <PRIMARY_ID>SRX18315205</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211983</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805832"> <IDENTIFIERS> <PRIMARY_ID>SRS15805832</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211983/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315206" alias="QDX43211984"> <IDENTIFIERS> <PRIMARY_ID>SRX18315206</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211984</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805833"> <IDENTIFIERS> <PRIMARY_ID>SRS15805833</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43211984/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315207" alias="QDX43211988"> <IDENTIFIERS> <PRIMARY_ID>SRX18315207</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211988</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805835"> <IDENTIFIERS> <PRIMARY_ID>SRS15805835</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211988/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315208" alias="QDX43211990"> <IDENTIFIERS> <PRIMARY_ID>SRX18315208</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211990</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805834"> <IDENTIFIERS> <PRIMARY_ID>SRS15805834</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211990/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315209" alias="QDX43211995"> <IDENTIFIERS> <PRIMARY_ID>SRX18315209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211995</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805836"> <IDENTIFIERS> <PRIMARY_ID>SRS15805836</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211995/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805842"> <IDENTIFIERS> <PRIMARY_ID>SRS15805842</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX43212187/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315216" alias="QDX43212188"> <IDENTIFIERS> <PRIMARY_ID>SRX18315216</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212188</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805843"> <IDENTIFIERS> <PRIMARY_ID>SRS15805843</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX43212188/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315217" alias="QDX43212189"> <IDENTIFIERS> <PRIMARY_ID>SRX18315217</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212189</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805844"> <IDENTIFIERS> <PRIMARY_ID>SRS15805844</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX43212189/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315218" alias="QDX43212191"> <IDENTIFIERS> <PRIMARY_ID>SRX18315218</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212191</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805845"> <IDENTIFIERS> <PRIMARY_ID>SRS15805845</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX43212191/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315219" alias="QDX43212192"> <IDENTIFIERS> <PRIMARY_ID>SRX18315219</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212192</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805846"> <IDENTIFIERS> <PRIMARY_ID>SRS15805846</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX43212192/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805851"> <IDENTIFIERS> <PRIMARY_ID>SRS15805851</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212211/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315225" alias="QDX43212212"> <IDENTIFIERS> <PRIMARY_ID>SRX18315225</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212212</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805852"> <IDENTIFIERS> <PRIMARY_ID>SRS15805852</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212212/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805858"> <IDENTIFIERS> <PRIMARY_ID>SRS15805858</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212233/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315233" alias="QDX43212234"> <IDENTIFIERS> <PRIMARY_ID>SRX18315233</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212234</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15805860"> <IDENTIFIERS> <PRIMARY_ID>SRS15805860</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212234/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211843/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315469" alias="QDX43211845"> <IDENTIFIERS> <PRIMARY_ID>SRX18315469</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211845</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806097"> <IDENTIFIERS> <PRIMARY_ID>SRS15806097</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211845/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315470" alias="QDX43211853"> <IDENTIFIERS> <PRIMARY_ID>SRX18315470</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211853</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806096"> <IDENTIFIERS> <PRIMARY_ID>SRS15806096</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211853/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315471" alias="QDX43211856"> <IDENTIFIERS> <PRIMARY_ID>SRX18315471</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211856</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806098"> <IDENTIFIERS> <PRIMARY_ID>SRS15806098</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211856/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315472" alias="QDX43211861"> <IDENTIFIERS> <PRIMARY_ID>SRX18315472</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211861</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806099"> <IDENTIFIERS> <PRIMARY_ID>SRS15806099</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211861/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315473" alias="QDX43211862"> <IDENTIFIERS> <PRIMARY_ID>SRX18315473</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211862</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806100"> <IDENTIFIERS> <PRIMARY_ID>SRS15806100</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211862/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315474" alias="QDX43211863"> <IDENTIFIERS> <PRIMARY_ID>SRX18315474</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211863</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806101"> <IDENTIFIERS> <PRIMARY_ID>SRS15806101</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211863/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211871/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315477" alias="QDX43211875"> <IDENTIFIERS> <PRIMARY_ID>SRX18315477</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211875</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806104"> <IDENTIFIERS> <PRIMARY_ID>SRS15806104</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211876/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315479" alias="QDX43211877"> <IDENTIFIERS> <PRIMARY_ID>SRX18315479</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211877</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806106"> <IDENTIFIERS> <PRIMARY_ID>SRS15806106</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211877/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315480" alias="QDX43211881"> <IDENTIFIERS> <PRIMARY_ID>SRX18315480</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211881</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806107"> <IDENTIFIERS> <PRIMARY_ID>SRS15806107</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43211881/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315481" alias="QDX43211888"> <IDENTIFIERS> <PRIMARY_ID>SRX18315481</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211888</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806108"> <IDENTIFIERS> <PRIMARY_ID>SRS15806108</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211888/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315482" alias="QDX43211891"> <IDENTIFIERS> <PRIMARY_ID>SRX18315482</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211891</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806109"> <IDENTIFIERS> <PRIMARY_ID>SRS15806109</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43211891/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315483" alias="QDX43211897"> <IDENTIFIERS> <PRIMARY_ID>SRX18315483</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211897</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806110"> <IDENTIFIERS> <PRIMARY_ID>SRS15806110</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211897/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315485" alias="QDX43211901"> <IDENTIFIERS> <PRIMARY_ID>SRX18315485</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211901</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806112"> <IDENTIFIERS> <PRIMARY_ID>SRS15806112</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211901/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315486" alias="QDX43211905"> <IDENTIFIERS> <PRIMARY_ID>SRX18315486</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211905</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806113"> <IDENTIFIERS> <PRIMARY_ID>SRS15806113</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211905/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315487" alias="QDX43211907"> <IDENTIFIERS> <PRIMARY_ID>SRX18315487</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211907</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806114"> <IDENTIFIERS> <PRIMARY_ID>SRS15806114</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211907/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315488" alias="QDX43212012"> <IDENTIFIERS> <PRIMARY_ID>SRX18315488</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212012</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806115"> <IDENTIFIERS> <PRIMARY_ID>SRS15806115</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212012/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315489" alias="QDX43212015"> <IDENTIFIERS> <PRIMARY_ID>SRX18315489</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212015</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806116"> <IDENTIFIERS> <PRIMARY_ID>SRS15806116</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212015/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315490" alias="QDX43212024"> <IDENTIFIERS> <PRIMARY_ID>SRX18315490</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212024</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806117"> <IDENTIFIERS> <PRIMARY_ID>SRS15806117</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212024/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315491" alias="QDX43212025"> <IDENTIFIERS> <PRIMARY_ID>SRX18315491</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212025</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806118"> <IDENTIFIERS> <PRIMARY_ID>SRS15806118</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43212025/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212034/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315494" alias="QDX43212039"> <IDENTIFIERS> <PRIMARY_ID>SRX18315494</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212039</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806122"> <IDENTIFIERS> <PRIMARY_ID>SRS15806122</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43212039/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315495" alias="QDX43212040"> <IDENTIFIERS> <PRIMARY_ID>SRX18315495</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212040</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806121"> <IDENTIFIERS> <PRIMARY_ID>SRS15806121</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212040/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315496" alias="QDX43212041"> <IDENTIFIERS> <PRIMARY_ID>SRX18315496</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212041</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806123"> <IDENTIFIERS> <PRIMARY_ID>SRS15806123</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212041/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315497" alias="QDX43212049"> <IDENTIFIERS> <PRIMARY_ID>SRX18315497</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212049</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806124"> <IDENTIFIERS> <PRIMARY_ID>SRS15806124</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212049/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315498" alias="QDX43212051"> <IDENTIFIERS> <PRIMARY_ID>SRX18315498</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212051</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806125"> <IDENTIFIERS> <PRIMARY_ID>SRS15806125</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212051/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315500" alias="QDX43212053"> <IDENTIFIERS> <PRIMARY_ID>SRX18315500</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212053</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806127"> <IDENTIFIERS> <PRIMARY_ID>SRS15806127</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX43212053/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315502" alias="QDX43212080"> <IDENTIFIERS> <PRIMARY_ID>SRX18315502</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212080</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806129"> <IDENTIFIERS> <PRIMARY_ID>SRS15806129</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43212080/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315503" alias="QDX43212082"> <IDENTIFIERS> <PRIMARY_ID>SRX18315503</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212082</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806130"> <IDENTIFIERS> <PRIMARY_ID>SRS15806130</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212082/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315504" alias="QDX43212085"> <IDENTIFIERS> <PRIMARY_ID>SRX18315504</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212085</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806131"> <IDENTIFIERS> <PRIMARY_ID>SRS15806131</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212085/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315505" alias="QDX43212087"> <IDENTIFIERS> <PRIMARY_ID>SRX18315505</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212087</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806132"> <IDENTIFIERS> <PRIMARY_ID>SRS15806132</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212087/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315506" alias="QDX43212088"> <IDENTIFIERS> <PRIMARY_ID>SRX18315506</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212088</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806133"> <IDENTIFIERS> <PRIMARY_ID>SRS15806133</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212088/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315507" alias="QDX43212089"> <IDENTIFIERS> <PRIMARY_ID>SRX18315507</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212089</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806134"> <IDENTIFIERS> <PRIMARY_ID>SRS15806134</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212089/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315508" alias="QDX43212095"> <IDENTIFIERS> <PRIMARY_ID>SRX18315508</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212095</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806135"> <IDENTIFIERS> <PRIMARY_ID>SRS15806135</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43212095/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212098/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315511" alias="QDX43212102"> <IDENTIFIERS> <PRIMARY_ID>SRX18315511</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212102</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> 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namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806139"> <IDENTIFIERS> <PRIMARY_ID>SRS15806139</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX43212103/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315513" alias="QDX43212105"> <IDENTIFIERS> <PRIMARY_ID>SRX18315513</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212105</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806140"> <IDENTIFIERS> <PRIMARY_ID>SRS15806140</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX43212105/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315514" alias="QDX43212106"> <IDENTIFIERS> <PRIMARY_ID>SRX18315514</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212106</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806141"> <IDENTIFIERS> <PRIMARY_ID>SRS15806141</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43212106/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> 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namespace="CDC-OAMD">QDX43292724</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806149"> <IDENTIFIERS> <PRIMARY_ID>SRS15806149</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292724/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315523" alias="QDX43292726"> <IDENTIFIERS> <PRIMARY_ID>SRX18315523</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292726</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806150"> <IDENTIFIERS> <PRIMARY_ID>SRS15806150</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292726/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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namespace="CDC-OAMD">QDX43292771</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806166"> <IDENTIFIERS> <PRIMARY_ID>SRS15806166</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292771/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806241"> <IDENTIFIERS> <PRIMARY_ID>SRS15806241</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165231/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315616" alias="QDX43165232"> <IDENTIFIERS> <PRIMARY_ID>SRX18315616</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165232</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806243"> <IDENTIFIERS> <PRIMARY_ID>SRS15806243</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165232/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> 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accession="SRX18315625" alias="QDX43165246"> <IDENTIFIERS> <PRIMARY_ID>SRX18315625</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43165246</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806253"> <IDENTIFIERS> <PRIMARY_ID>SRS15806253</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165246/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211750/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315664" alias="QDX43211754"> <IDENTIFIERS> <PRIMARY_ID>SRX18315664</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211754</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806291"> <IDENTIFIERS> <PRIMARY_ID>SRS15806291</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211754/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315665" alias="QDX43211757"> <IDENTIFIERS> <PRIMARY_ID>SRX18315665</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211757</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806293"> <IDENTIFIERS> <PRIMARY_ID>SRS15806293</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211759/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315667" alias="QDX43211762"> <IDENTIFIERS> <PRIMARY_ID>SRX18315667</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211762</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806294"> <IDENTIFIERS> <PRIMARY_ID>SRS15806294</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211762/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315668" alias="QDX43211763"> <IDENTIFIERS> <PRIMARY_ID>SRX18315668</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211763</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806295"> <IDENTIFIERS> <PRIMARY_ID>SRS15806295</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211763/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806300"> <IDENTIFIERS> <PRIMARY_ID>SRS15806300</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211774/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315674" alias="QDX43211777"> <IDENTIFIERS> <PRIMARY_ID>SRX18315674</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211777</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806301"> <IDENTIFIERS> <PRIMARY_ID>SRS15806301</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211777/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315675" alias="QDX43211778"> <IDENTIFIERS> <PRIMARY_ID>SRX18315675</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211778</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806302"> <IDENTIFIERS> <PRIMARY_ID>SRS15806302</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211778/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315676" alias="QDX43211779"> <IDENTIFIERS> <PRIMARY_ID>SRX18315676</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211779</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806303"> <IDENTIFIERS> <PRIMARY_ID>SRS15806303</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211779/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806310"> <IDENTIFIERS> <PRIMARY_ID>SRS15806310</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX43211790/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315684" alias="QDX43211791"> <IDENTIFIERS> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315694" alias="QDX43212257"> <IDENTIFIERS> <PRIMARY_ID>SRX18315694</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212257</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806321"> <IDENTIFIERS> <PRIMARY_ID>SRS15806321</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43212257/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315695" alias="QDX43212258"> <IDENTIFIERS> <PRIMARY_ID>SRX18315695</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212258</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806322"> <IDENTIFIERS> <PRIMARY_ID>SRS15806322</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/LA-CDC-QDX43212258/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315697" alias="QDX43212262"> <IDENTIFIERS> <PRIMARY_ID>SRX18315697</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212262</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806324"> <IDENTIFIERS> <PRIMARY_ID>SRS15806324</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212262/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315698" alias="QDX43212263"> <IDENTIFIERS> <PRIMARY_ID>SRX18315698</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212263</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806325"> <IDENTIFIERS> <PRIMARY_ID>SRS15806325</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212263/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315699" alias="QDX43212264"> <IDENTIFIERS> <PRIMARY_ID>SRX18315699</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212264</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806326"> <IDENTIFIERS> <PRIMARY_ID>SRS15806326</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212264/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315700" alias="QDX43212265"> <IDENTIFIERS> <PRIMARY_ID>SRX18315700</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212265</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806327"> <IDENTIFIERS> <PRIMARY_ID>SRS15806327</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212265/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315701" alias="QDX43212266"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315702" alias="QDX43212267"> <IDENTIFIERS> <PRIMARY_ID>SRX18315702</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212267</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806329"> <IDENTIFIERS> <PRIMARY_ID>SRS15806329</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212267/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315704" alias="QDX43212270"> <IDENTIFIERS> <PRIMARY_ID>SRX18315704</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212270</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806331"> <IDENTIFIERS> <PRIMARY_ID>SRS15806331</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212270/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212272/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315707" alias="QDX43212273"> <IDENTIFIERS> <PRIMARY_ID>SRX18315707</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212273</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806565"> <IDENTIFIERS> <PRIMARY_ID>SRS15806565</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AZ-CDC-QDX43211602/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315939" alias="QDX43211604"> <IDENTIFIERS> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806582"> <IDENTIFIERS> <PRIMARY_ID>SRS15806582</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211721/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315956" alias="QDX43211724"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315957" alias="QDX43211725"> <IDENTIFIERS> <PRIMARY_ID>SRX18315957</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43211725</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806584"> <IDENTIFIERS> <PRIMARY_ID>SRS15806584</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211725/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806589"> <IDENTIFIERS> <PRIMARY_ID>SRS15806589</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX43211737/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315964" alias="QDX43212296"> <IDENTIFIERS> <PRIMARY_ID>SRX18315964</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212296</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806591"> <IDENTIFIERS> <PRIMARY_ID>SRS15806591</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212296/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315965" alias="QDX43212297"> <IDENTIFIERS> <PRIMARY_ID>SRX18315965</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212297</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806592"> <IDENTIFIERS> <PRIMARY_ID>SRS15806592</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212297/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315966" alias="QDX43212298"> <IDENTIFIERS> <PRIMARY_ID>SRX18315966</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212298</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806593"> <IDENTIFIERS> <PRIMARY_ID>SRS15806593</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212298/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315969" alias="QDX43212303"> <IDENTIFIERS> <PRIMARY_ID>SRX18315969</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212303</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806596"> <IDENTIFIERS> <PRIMARY_ID>SRS15806596</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212303/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315970" alias="QDX43212304"> <IDENTIFIERS> <PRIMARY_ID>SRX18315970</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212304</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806597"> <IDENTIFIERS> <PRIMARY_ID>SRS15806597</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212304/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315971" alias="QDX43212305"> <IDENTIFIERS> <PRIMARY_ID>SRX18315971</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212305</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806598"> <IDENTIFIERS> <PRIMARY_ID>SRS15806598</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212305/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315972" alias="QDX43212306"> <IDENTIFIERS> <PRIMARY_ID>SRX18315972</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212306</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806599"> <IDENTIFIERS> <PRIMARY_ID>SRS15806599</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212306/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315973" alias="QDX43212307"> <IDENTIFIERS> <PRIMARY_ID>SRX18315973</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212307</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806600"> <IDENTIFIERS> <PRIMARY_ID>SRS15806600</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212307/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315974" alias="QDX43212308"> <IDENTIFIERS> <PRIMARY_ID>SRX18315974</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212308</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806601"> <IDENTIFIERS> <PRIMARY_ID>SRS15806601</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212308/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315976" alias="QDX43212310"> <IDENTIFIERS> <PRIMARY_ID>SRX18315976</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212310</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806604"> <IDENTIFIERS> <PRIMARY_ID>SRS15806604</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212310/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315978" alias="QDX43212313"> <IDENTIFIERS> <PRIMARY_ID>SRX18315978</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212313</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806605"> <IDENTIFIERS> <PRIMARY_ID>SRS15806605</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212313/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315979" alias="QDX43212314"> <IDENTIFIERS> <PRIMARY_ID>SRX18315979</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43212314</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806607"> <IDENTIFIERS> <PRIMARY_ID>SRS15806607</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX43212314/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315980" alias="QDX43292446"> <IDENTIFIERS> <PRIMARY_ID>SRX18315980</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292446</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806606"> <IDENTIFIERS> <PRIMARY_ID>SRS15806606</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX43292446/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315981" alias="QDX43292447"> <IDENTIFIERS> <PRIMARY_ID>SRX18315981</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292447</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806608"> <IDENTIFIERS> <PRIMARY_ID>SRS15806608</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX43292447/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315982" alias="QDX43292613"> <IDENTIFIERS> <PRIMARY_ID>SRX18315982</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292613</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806610"> <IDENTIFIERS> <PRIMARY_ID>SRS15806610</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292613/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315983" alias="QDX43292615"> <IDENTIFIERS> <PRIMARY_ID>SRX18315983</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292615</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806609"> <IDENTIFIERS> <PRIMARY_ID>SRS15806609</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292615/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315985" alias="QDX43292618"> <IDENTIFIERS> <PRIMARY_ID>SRX18315985</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292618</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806613"> <IDENTIFIERS> <PRIMARY_ID>SRS15806613</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292618/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315986" alias="QDX43292619"> <IDENTIFIERS> <PRIMARY_ID>SRX18315986</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292619</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806612"> <IDENTIFIERS> <PRIMARY_ID>SRS15806612</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292619/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315987" alias="QDX43292620"> <IDENTIFIERS> <PRIMARY_ID>SRX18315987</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292620</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806614"> <IDENTIFIERS> <PRIMARY_ID>SRS15806614</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292620/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315988" alias="QDX43292624"> <IDENTIFIERS> <PRIMARY_ID>SRX18315988</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292624</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806615"> <IDENTIFIERS> <PRIMARY_ID>SRS15806615</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292624/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315989" alias="QDX43292625"> <IDENTIFIERS> <PRIMARY_ID>SRX18315989</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292625</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806616"> <IDENTIFIERS> <PRIMARY_ID>SRS15806616</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292625/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315990" alias="QDX43292626"> <IDENTIFIERS> <PRIMARY_ID>SRX18315990</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292626</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806618"> <IDENTIFIERS> <PRIMARY_ID>SRS15806618</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292626/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315991" alias="QDX43292628"> <IDENTIFIERS> <PRIMARY_ID>SRX18315991</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292628</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806617"> <IDENTIFIERS> <PRIMARY_ID>SRS15806617</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292628/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315993" alias="QDX43292632"> <IDENTIFIERS> <PRIMARY_ID>SRX18315993</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292632</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806620"> <IDENTIFIERS> <PRIMARY_ID>SRS15806620</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292632/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292637/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315996" alias="QDX43292828"> <IDENTIFIERS> <PRIMARY_ID>SRX18315996</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292828</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806623"> <IDENTIFIERS> <PRIMARY_ID>SRS15806623</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292828/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315997" alias="QDX43292832"> <IDENTIFIERS> <PRIMARY_ID>SRX18315997</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX43292832</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806624"> <IDENTIFIERS> <PRIMARY_ID>SRS15806624</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292832/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18315998" alias="QDX43292834"> <IDENTIFIERS> <PRIMARY_ID>SRX18315998</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806633"> <IDENTIFIERS> <PRIMARY_ID>SRS15806633</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NV-CDC-QDX43292875/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX18316007" alias="QDX43292879"> <IDENTIFIERS> 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namespace="CDC-OAMD">QDX43165050</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS15806744"> <IDENTIFIERS> <PRIMARY_ID>SRS15806744</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/TX-CDC-QDX43165050/2022</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> </EXPERIMENT_SET>