SRX18321618 MJM00183 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811886 MJM00183 MJM00183 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321619 MJM00191 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811887 MJM00191 MJM00191 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321620 MJM00378 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811888 MJM00378 MJM00378 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321621 MJM00388 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811889 MJM00388 MJM00388 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321622 MJM00143 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811890 MJM00143 MJM00143 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321623 MJM00181 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811891 MJM00181 MJM00181 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321624 MJM00182 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811892 MJM00182 MJM00182 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321625 MJM00189 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811893 MJM00189 MJM00189 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321626 MJM00199 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811894 MJM00199 MJM00199 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321627 MJM00211 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811895 MJM00211 MJM00211 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321628 MJM00369 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811896 MJM00369 MJM00369 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321629 MJM00371 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811897 MJM00371 MJM00371 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321630 MJM00193 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811899 MJM00193 MJM00193 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321631 MJM00245 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811898 MJM00245 MJM00245 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321632 MJM00273 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811900 MJM00273 MJM00273 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321633 MJM00364 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811901 MJM00364 MJM00364 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321634 MJM00377 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811902 MJM00377 MJM00377 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321635 MJM00185 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811903 MJM00185 MJM00185 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321636 MJM00214 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811904 MJM00214 MJM00214 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321637 MJM00292 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811905 MJM00292 MJM00292 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321638 MJM00397 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811906 MJM00397 MJM00397 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321639 MJM00192 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811907 MJM00192 MJM00192 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321640 MJM00212 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811908 MJM00212 MJM00212 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321641 MJM00207 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811909 MJM00207 MJM00207 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321642 MJM00220 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811910 MJM00220 MJM00220 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321643 MJM00222 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811912 MJM00222 MJM00222 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321644 MJM00243 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811911 MJM00243 MJM00243 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321645 MJM00274 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811913 MJM00274 MJM00274 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321646 MJM00365 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811914 MJM00365 MJM00365 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321647 MJM00382 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811915 MJM00382 MJM00382 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321648 MJM00164 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811916 MJM00164 MJM00164 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321649 MJM00203 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811917 MJM00203 MJM00203 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321650 MJM00553 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811918 MJM00553 MJM00553 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321651 MJM00573 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811919 MJM00573 MJM00573 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321652 LNB01903 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811920 LNB01903 LNB01903 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321653 MJM00186 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811921 MJM00186 MJM00186 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321654 MJM00187 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811922 MJM00187 MJM00187 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321655 MJM00241 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811923 MJM00241 MJM00241 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321656 MJM00169 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811924 MJM00169 MJM00169 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321657 MJM00188 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811925 MJM00188 MJM00188 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321658 MJM00398 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811926 MJM00398 MJM00398 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321659 MJM00383 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811927 MJM00383 MJM00383 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321660 LNB01904 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811928 LNB01904 LNB01904 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321661 MJM00602 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811929 MJM00602 MJM00602 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321662 MJM00699 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811930 MJM00699 MJM00699 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321663 MJM00218 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811931 MJM00218 MJM00218 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000 SRX18321664 MJM00224 SRP408795 bp0 Genotyping-by-sequencing (GBS) libraries were prepared following a modified version of the protocol described in Elshire et al. (2011). We digested 100 ng of input DNA with the enzyme Pst1, ligated 8 L of adapter mix including unique barcodes, pooled libraries, and performed a bead cleanup with Sera-Mag Speedbeads (Rohland and Reich 2012). Final PCR amplification was conducted with 16 cycles in 8 replicate reactions, followed by pooling, bead cleanup, and quantification via a Qubit fluorometer (Life Technologies). Libraries were size selected to 200-500 bp using a Blue Pippen (Sage Science Inc.), quantified with a Bioanalyzer (Agilent Technologies), and sequenced at the OSU Comprehensive Cancer Center Genomics Shared Resource on an Illumina HiSeq 4000 with 150 bp sequencing SRS15811932 MJM00224 MJM00224 RAD-Seq GENOMIC Restriction Digest Illumina HiSeq 4000