16S analysis of chcken or environments: broiler chicken

SRX18383428 CH01 16S analysis of chcken or environments: broiler chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 16S rRNA gene SRS15869062 Farm_Chicken_1 CH01 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383429 CH02 16S analysis of chcken or environments: broiler chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 17S rRNA gene SRS15869063 Farm_Chicken_2 CH02 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383430 CH11 16S analysis of chcken or environments: farm floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 26S rRNA gene SRS15869064 Farm_Floor_2 CH11 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383431 CH12 16S analysis of chcken or environments: farm floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 27S rRNA gene SRS15869065 Farm_Floor_3 CH12 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383432 CH13 16S analysis of chcken or environments: farm ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 28S rRNA gene SRS15869066 Farm_Fan_1 CH13 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383433 CH14 16S analysis of chcken or environments: farm ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 29S rRNA gene SRS15869067 Farm_Fan_2 CH14 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383434 CH15 16S analysis of chcken or environments: farm ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 30S rRNA gene SRS15869068 Farm_Fan_3 CH15 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383435 CH16 16S analysis of chcken or environments: farm drinking water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 31S rRNA gene SRS15869069 Farm_Water(D)_1 CH16 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383436 CH17 16S analysis of chcken or environments: farm drinking water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 32S rRNA gene SRS15869070 Farm_Water(D)_2 CH17 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383437 CH18 16S analysis of chcken or environments: farm drinking water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 33S rRNA gene SRS15869071 Farm_Water(D)_3 CH18 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383438 CH19 16S analysis of chcken or environments: farm glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 34S rRNA gene SRS15869072 Farm_Gloves_1 CH19 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383439 CH20 16S analysis of chcken or environments: farm glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 35S rRNA gene SRS15869074 Farm_Gloves_2 CH20 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383440 CH03 16S analysis of chcken or environments: broiler chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 18S rRNA gene SRS15869073 Farm_Chicken_3 CH03 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383441 CH21 16S analysis of chcken or environments: farm glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 36S rRNA gene SRS15869075 Farm_Gloves_3 CH21 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383442 CH22 16S analysis of chcken or environments: slaughtered carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 37S rRNA gene SRS15869076 Slaughter_Carcass_1 CH22 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383443 CH23 16S analysis of chcken or environments: slaughtered carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 38S rRNA gene SRS15869077 Slaughter_Carcass_2 CH23 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383444 CH24 16S analysis of chcken or environments: slaughtered carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 39S rRNA gene SRS15869078 Slaughter_Carcass_3 CH24 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383445 CH25 16S analysis of chcken or environments: slaughterhouse knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 40S rRNA gene SRS15869079 Slaughter_Knife_1 CH25 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383446 CH26 16S analysis of chcken or environments: slaughterhouse knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 41S rRNA gene SRS15869080 Slaughter_Knife_2 CH26 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383447 CH27 16S analysis of chcken or environments: slaughterhouse knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 42S rRNA gene SRS15869081 Slaughter_Knife_3 CH27 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383448 CH28 16S analysis of chcken or environments: slaughterhouse floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 43S rRNA gene SRS15869082 Slaughter_Floor_1 CH28 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383449 CH29 16S analysis of chcken or environments: slaughterhouse floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 44S rRNA gene SRS15869083 Slaughter_Floor_2 CH29 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383450 CH30 16S analysis of chcken or environments: slaughterhouse floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 45S rRNA gene SRS15869084 Slaughter_Floor_3 CH30 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383451 CH04 16S analysis of chcken or environments: farm feed SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 19S rRNA gene SRS15869085 Farm_Feed_1 CH04 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383452 CH31 16S analysis of chcken or environments: slaughterhouse drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 46S rRNA gene SRS15869086 Slaughter_Drain_1 CH31 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383453 CH32 16S analysis of chcken or environments: slaughterhouse drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 47S rRNA gene SRS15869087 Slaughter_Drain_2 CH32 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383454 CH33 16S analysis of chcken or environments: slaughterhouse drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 48S rRNA gene SRS15869088 Slaughter_Drain_3 CH33 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383455 CH34 16S analysis of chcken or environments: slaughterhouse wash water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 49S rRNA gene SRS15869089 Slaughter_Water(C)_1 CH34 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383456 CH35 16S analysis of chcken or environments: slaughterhouse wash water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 50S rRNA gene SRS15869090 Slaughter_Water(C)_2 CH35 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383457 CH36 16S analysis of chcken or environments: slaughterhouse wash water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 51S rRNA gene SRS15869091 Slaughter_Water(C)_3 CH36 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383458 CH37 16S analysis of chcken or environments: scalding water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 52S rRNA gene SRS15869092 Slaughter_ScaldingWater_1 CH37 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383459 CH38 16S analysis of chcken or environments: scalding water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 53S rRNA gene SRS15869093 Slaughter_ScaldingWater_2 CH38 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383460 CH39 16S analysis of chcken or environments: scalding water SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 54S rRNA gene SRS15869094 Slaughter_ScaldingWater_3 CH39 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383461 CH40 16S analysis of chcken or environments: slaughterhouse ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 55S rRNA gene SRS15869095 Slaughter_Fan_1 CH40 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383462 CH05 16S analysis of chcken or environments: farm feed SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 20S rRNA gene SRS15869096 Farm_Feed_2 CH05 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383463 CH41 16S analysis of chcken or environments: slaughterhouse ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 56S rRNA gene SRS15869097 Slaughter_Fan_2 CH41 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383464 CH42 16S analysis of chcken or environments: slaughterhouse ventilation fan SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 57S rRNA gene SRS15869098 Slaughter_Fan_3 CH42 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383465 CH43 16S analysis of chcken or environments: slaughterhouse gloves SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 58S rRNA gene SRS15869100 Slaughter_Gloves_1 CH43 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383466 CH44 16S analysis of chcken or environments: slaughterhouse gloves SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 59S rRNA gene SRS15869099 Slaughter_Gloves_2 CH44 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383467 CH45 16S analysis of chcken or environments: slaughterhouse gloves SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 60S rRNA gene SRS15869101 Slaughter_Gloves_3 CH45 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383468 CH46 16S analysis of chcken or environments: processed carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 61S rRNA gene SRS15869102 Processing_Carcass_1 CH46 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383469 CH47 16S analysis of chcken or environments: processed carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 62S rRNA gene SRS15869103 Processing_Carcass_2 CH47 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383470 CH48 16S analysis of chcken or environments: processed carcass SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 63S rRNA gene SRS15869104 Processing_Carcass_3 CH48 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383471 CH49 16S analysis of chcken or environments: processing knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 64S rRNA gene SRS15869105 Processing_Knife_1 CH49 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383472 CH50 16S analysis of chcken or environments: processing knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 65S rRNA gene SRS15869106 Processing_Knife_2 CH50 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383473 CH06 16S analysis of chcken or environments: farm feed SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 21S rRNA gene SRS15869107 Farm_Feed_3 CH06 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383474 CH51 16S analysis of chcken or environments: processing knife SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 66S rRNA gene SRS15869108 Processing_Knife_3 CH51 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383475 CH52 16S analysis of chcken or environments: plant floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 67S rRNA gene SRS15869109 Processing_Floor_1 CH52 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383476 CH53 16S analysis of chcken or environments: plant floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 68S rRNA gene SRS15869110 Processing_Floor_2 CH53 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383477 CH54 16S analysis of chcken or environments: plant floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 69S rRNA gene SRS15869111 Processing_Floor_3 CH54 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383478 CH58 16S analysis of chcken or environments: plant worktable SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 70S rRNA gene SRS15869112 Processing_Worktable_1 CH58 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383479 CH59 16S analysis of chcken or environments: plant worktable SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 71S rRNA gene SRS15869113 Processing_Worktable_2 CH59 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383480 CH60 16S analysis of chcken or environments: plant worktable SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 72S rRNA gene SRS15869114 Processing_Worktable_3 CH60 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383481 CH61 16S analysis of chcken or environments: plant glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 73S rRNA gene SRS15869115 Processing_Gloves_1 CH61 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383482 CH62 16S analysis of chcken or environments: plant glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 74S rRNA gene SRS15869116 Processing_Gloves_2 CH62 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383483 CH63 16S analysis of chcken or environments: plant glove SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 75S rRNA gene SRS15869117 Processing_Gloves_3 CH63 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383484 CH07 16S analysis of chcken or environments: broiler feces SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 22S rRNA gene SRS15869119 Farm_Feces_1 CH07 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383485 CH64 16S analysis of chcken or environments: plant drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 76S rRNA gene SRS15869118 Processing_Drain_1 CH64 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383486 CH65 16S analysis of chcken or environments: plant drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 77S rRNA gene SRS15869120 Processing_Drain_2 CH65 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383487 CH66 16S analysis of chcken or environments: plant drain SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 78S rRNA gene SRS15869121 Processing_Drain_3 CH66 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383488 CH67 16S analysis of chcken or environments: whole chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 79S rRNA gene SRS15869122 Distribution_Whole_1 CH67 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383489 CH68 16S analysis of chcken or environments: whole chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 80S rRNA gene SRS15869123 Distribution_Whole_2 CH68 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383490 CH69 16S analysis of chcken or environments: whole chicken SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 81S rRNA gene SRS15869124 Distribution_Whole_3 CH69 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383491 CH70 16S analysis of chcken or environments: partial meat product SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 82S rRNA gene SRS15869126 Distribution_Cut_1 CH70 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383492 CH71 16S analysis of chcken or environments: partial meat product SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 83S rRNA gene SRS15869125 Distribution_Cut_2 CH71 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383493 CH72 16S analysis of chcken or environments: partial meat product SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 84S rRNA gene SRS15869127 Distribution_Cut_3 CH72 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383494 CH08 16S analysis of chcken or environments: broiler feces SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 23S rRNA gene SRS15869128 Farm_Feces_2 CH08 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383495 CH09 16S analysis of chcken or environments: broiler feces SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 24S rRNA gene SRS15869129 Farm_Feces_3 CH09 AMPLICON METAGENOMIC PCR Illumina MiSeq SRX18383496 CH10 16S analysis of chcken or environments: farm floor SRP409926 bp0 Dual index amplicon sequencing pipeline targeting bacterial 25S rRNA gene SRS15869130 Farm_Floor_1 CH10 AMPLICON METAGENOMIC PCR Illumina MiSeq