<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX18390881" alias="WGS">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18390881</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12330167">WGS</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>ONT WGS of P. vulgaris L. Midas</TITLE>
    <STUDY_REF accession="SRP410052">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410052</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12330167">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>HMW gDNA was treated with the Short read eliminator kit to remove fragments &lt;25 kbp. Two libraries were prepared from 2 aliquots of gDNA without initial fragmentation and following ONTs Genomic DNA by ligation protocol.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15874996">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15874996</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|mstsmn90@gmail.com">P. vulgaris L. Midas</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>WGS</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18390882" alias="Crispr-Cas9 tiling">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18390882</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12330167">Crispr-Cas9 tiling</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>ONT Crispr-Cas9 enriched shattering-associated region of P. vulgaris L. Midas</TITLE>
    <STUDY_REF accession="SRP410052">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410052</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12330167">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>CrRNAs were divided into two pools so that Pool1 would excise subregions 1, 3 and 5 and Pool2 would excise subregions 2 and 4. Two separate mixtures of 6 (Pool 1) and 4 (Pool 2) crRNAs were prepared, and each mixture was completed with transactivation crRNA and duplex buffer and then denatured and cooled to room temperature. RNPs 1 and 2 were formed by mixing each gRNA pool with HiFi Cas9 Nuclease V3 in CutSmart Buffer and incubating at RT. After genomic DNA cutting was completed, the two reactions were pooled together, and the mixture was purified using AMPure XP magnetic beads. Beads were washed twice using Long Fragment Buffer to remove short fragments and DNA was eluted using Elution Buffer.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15874996">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15874996</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|mstsmn90@gmail.com">P. vulgaris L. Midas</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Crispr-Cas9 tiling</LIBRARY_NAME>
        <LIBRARY_STRATEGY>Targeted-Capture</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
