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      <PRIMARY_ID>SRX18392426</PRIMARY_ID>
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    <TITLE>RNAseq of Homo Sapiens: normal esophagus</TITLE>
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        <PRIMARY_ID>SRP410072</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX18392427</PRIMARY_ID>
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    <TITLE>RNAseq of Homo Sapiens: normal stomach</TITLE>
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        <PRIMARY_ID>SRP410072</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX18392428</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">MT4</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: mesothelioma</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
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      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS15876541</PRIMARY_ID>
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          <SINGLE/>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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  <EXPERIMENT accession="SRX18392429" alias="CC76">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392429</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC76</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: colon cancer</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS15876543</PRIMARY_ID>
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        <LIBRARY_NAME>CC76</LIBRARY_NAME>
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          <SINGLE/>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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  <EXPERIMENT accession="SRX18392430" alias="CC89">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392430</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC89</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: colon cancer</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS15876544</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>CC89</LIBRARY_NAME>
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          <SINGLE/>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392431</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">BLC1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: urothelial cancer</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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          <PRIMARY_ID>SRS15876545</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>BLC1</LIBRARY_NAME>
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          <SINGLE/>
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    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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  <EXPERIMENT accession="SRX18392432" alias="CC86">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392432</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC86</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: colon cancer</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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      <LIBRARY_DESCRIPTOR>
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        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392433</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC102</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: colon cancer</TITLE>
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        <PRIMARY_ID>SRP410072</PRIMARY_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX18392434</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">MN-9</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: normal tissue adjacent to mesothelioma</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX18392435</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">MN-1</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: normal colon</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876549</PRIMARY_ID>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
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      <PRIMARY_ID>SRX18392436</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">MN-2</SUBMITTER_ID>
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    <TITLE>RNAseq of Homo Sapiens: normal colon</TITLE>
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      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
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    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
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      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18392437" alias="MN-6">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392437</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">MN-6</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: normal bladder</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15876551">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876551</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|sorokin@oncobox.com">MN-6</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>MN-6</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18392438" alias="CC_87">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392438</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC_87</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: normal colon</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15876552">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876552</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|sorokin@oncobox.com">CC_87</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>CC_87</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18392439" alias="CC101">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392439</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">CC101</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: normal colon</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15876553">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876553</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|sorokin@oncobox.com">CC101</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>CC101</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18392440" alias="LET1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392440</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">LET1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: gastric cancer</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15876554">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876554</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|sorokin@oncobox.com">LET1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LET1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18392441" alias="LST1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18392441</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12326049">LST1</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>RNAseq of Homo Sapiens: gastric cancer</TITLE>
    <STUDY_REF accession="SRP410072">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410072</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12326049">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>RNA sequencing was performed according to the previous protocol used to generate ANTE collection of healthy tissue RNAseq profiles (Suntsova et al (2019)).  To isolate RNA preps, 10 M-thick paraffin slices were trimmed from each FFPE tissue block with a microtome. RNA was extracted from FFPE slices using QIAGEN RNeasy FFPE Kit following the manufacturers protocol. RNA 6000 Nano or Qubit RNA Assay kits were used to measure RNA concentration. RNA Integrity Number (RIN) was measured using Agilent 2100 bio-Analyzer. For depletion of ribosomal RNA and library construction, KAPA RNA Hyper with rRNA erase kit (HMR only) was used. Different adaptors were used for multiplexing samples in a single sequencing run. Library concentrations were measured using the Qubit ds DNA HS Assay kit (Life Technologies) and Agilent Tapestation (Agilent). RNA sequencing was performed using Illumina NextSeq550 equipment for single-end sequencing, 70 bp read length).</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15876555">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15876555</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|sorokin@oncobox.com">LST1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>LST1</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 550</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
