SRS15883715 SAMN31891562 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0019 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 264266.06899999996 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883716 SAMN31891563 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.44 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 167656.8125 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883717 SAMN31891572 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7459 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 58838.555270000004 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883718 SAMN31891662 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.4363 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220058.0025 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883719 SAMN31891663 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.2 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 178559.468 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883720 SAMN31891664 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.583 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 219561.9889 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883721 SAMN31891665 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.2 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 293355.0419 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883722 SAMN31891666 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.31 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 314300.4175 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883723 SAMN31891667 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.653396 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 97767.011 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883724 SAMN31891668 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.539 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 231118.9039 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883725 SAMN31891669 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.531 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 563200.6496 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883726 SAMN31891670 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883727 SAMN31891671 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0021 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 183221.1797 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883728 SAMN31891672 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.79 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 76039.63643 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883729 SAMN31891573 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.1 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 189339.863 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883730 SAMN31891673 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.801 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75921.181 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883731 SAMN31891674 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.72 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 291874.1717 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883732 SAMN31891675 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.49 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 285394.1688 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883733 SAMN31891676 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.855 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 116615.6415 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883734 SAMN31891677 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.963 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 142279.83 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883735 SAMN31891678 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.02 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75439.31356000001 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883736 SAMN31891679 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.77 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 302777.3583 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883737 SAMN31891680 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.77 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 227636.6079 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883738 SAMN31891681 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.4 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75559.51521 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883739 SAMN31891574 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 54.7 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 278779.3011 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883740 SAMN31891682 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 55.7 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 355629.3299 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883741 SAMN31891684 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.61 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 222533.88 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883742 SAMN31891683 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.838 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 297539.8464 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883743 SAMN31891685 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-21 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.3 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 253222.6536 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211021 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883744 SAMN31891686 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.8 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 93815.03594 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883745 SAMN31891687 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.6709999999999999 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 164709.5298 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883746 SAMN31891688 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.2 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26112.57206 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883747 SAMN31891689 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.65 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32093.539689999998 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883748 SAMN31891690 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.2465 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 63745.40102999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883749 SAMN31891691 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.04 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 285981.5777 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883750 SAMN31891575 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.828 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 375568.6159 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883751 SAMN31891692 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.63 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 248295.0494 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883752 SAMN31891694 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.007 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 92751.99425 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883753 SAMN31891693 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.776 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 135443.7608 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883754 SAMN31891696 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.43 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 113318.2386 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883755 SAMN31891695 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.85 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 71265.59427 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883756 SAMN31891697 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.11 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 186058.7869 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883757 SAMN31891698 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 26.1 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 101822.7989 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883758 SAMN31891700 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.872 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 142765.5699 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883759 SAMN31891699 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 57.8 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 109758.2735 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883760 SAMN31891576 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883761 SAMN31891701 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.88 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82568.84319 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883762 SAMN31891702 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-04 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.5 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 134731.2752 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211004 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883763 SAMN31891747 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.2 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 70393.98831 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883764 SAMN31891748 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 56.5 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 208777.7052 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883765 SAMN31891749 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.874 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 306481.11699999997 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883766 SAMN31891751 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.735 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 233965.4156 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883767 SAMN31891750 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 309885.9488 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883768 SAMN31891752 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.615 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 266386.3745 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883769 SAMN31891581 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.13555 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 95397.16488 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883770 SAMN31891754 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.615 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 429851.8574 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883771 SAMN31891753 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.872000000000001 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 255892.4908 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883772 SAMN31891755 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.067 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 202989.9188 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883773 SAMN31891756 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.1 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 128153.0294 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883774 SAMN31891757 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.962000000000001 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 58797.333320000005 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883775 SAMN31891758 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.19 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 332223.9316 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883776 SAMN31891759 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 28.11 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 362087.3593 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883777 SAMN31891760 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.844 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 159151.604 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883778 SAMN31891761 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.517999999999999 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 219778.3839 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883779 SAMN31891564 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.9711 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 107543.9985 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883780 SAMN31891582 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.14 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 303003.532 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883781 SAMN31891762 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.75 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 117851.9621 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883782 SAMN31891763 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.57 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 312014.7612 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883783 SAMN31891764 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.98 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 337169.2757 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883784 SAMN31891765 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.3977 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 74365.06723 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883785 SAMN31891766 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 26.4 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 158399.0925 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883786 SAMN31891767 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 56.2 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 151465.2943 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883787 SAMN31891629 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.62 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 92644.18333 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883788 SAMN31891630 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.93 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 88920.2942 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883789 SAMN31891631 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190113.2919 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883790 SAMN31891569 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.54 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 242716.0678 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883791 SAMN31891632 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.5 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 193052.0617 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883792 SAMN31891633 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-13 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.777 instantaneous_flow NaN ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene CDC N2 primers purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id UTEP20211013 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883793 SAMN31891634 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-17 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.777 instantaneous_flow NaN ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene CDC N2 primers purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id UTEP20211017 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883794 SAMN31891635 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883795 SAMN31891636 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883796 SAMN31891637 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883797 SAMN31891638 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883798 SAMN31891639 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883799 SAMN31891640 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883800 SAMN31891641 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883801 SAMN31891570 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.43 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 365095.6202 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883802 SAMN31891642 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883803 SAMN31891643 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883804 SAMN31891644 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883805 SAMN31891645 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883806 SAMN31891646 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883807 SAMN31891648 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883808 SAMN31891647 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883809 SAMN31891649 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883810 SAMN31891650 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883811 SAMN31891703 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.778 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 162951.0574 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883812 SAMN31891704 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.633 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 478634.1329 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883813 SAMN31891705 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883814 SAMN31891706 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0035 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 144930.0943 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883815 SAMN31891707 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.0 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 59358.193 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883816 SAMN31891708 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.141 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 70595.96557 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883817 SAMN31891709 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.69 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 323900.067 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883818 SAMN31891710 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.58 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 229648.7528 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883819 SAMN31891711 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.723 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 252086.4881 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883820 SAMN31891577 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.3 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 169021.2728 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883821 SAMN31891712 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.283 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 93802.38442999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883822 SAMN31891713 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.86 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 107220.8793 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883823 SAMN31891714 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.41 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 121078.1307 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883824 SAMN31891715 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.88 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 147187.0598 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883825 SAMN31891716 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.8938 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 40343.1586 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883826 SAMN31891717 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 26.0 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 77723.70501 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883827 SAMN31891718 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 59.2 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96297.7212 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883828 SAMN31891719 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.192 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 98889.91446 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883829 SAMN31891720 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.8 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 65380.82216 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883830 SAMN31891721 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-30 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 128903.2783 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20210930 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883831 SAMN31891578 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.48 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 255946.9073 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883832 SAMN31891722 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0008 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 336579.2247 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883833 SAMN31891723 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.6 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 104281.2249 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883834 SAMN31891724 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.6841099999999996 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 70791.94464 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883835 SAMN31891768 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.880999999999998 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 294297.3357 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883836 SAMN31891769 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.81 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 161163.639 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883837 SAMN31891770 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-25 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.8 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 212078.5637 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211025 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883838 SAMN31891771 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.8 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 145565.1572 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883839 SAMN31891583 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.92 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 286271.0385 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883840 SAMN31891772 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.685 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 191714.8664 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883841 SAMN31891773 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.2 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 18556.10359 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883842 SAMN31891775 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.09 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52095.25437 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883843 SAMN31891774 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.004 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 204869.4789 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883844 SAMN31891776 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.03111 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 48533.95828 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883845 SAMN31891778 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.44 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 186453.5746 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883846 SAMN31891777 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.55 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 276791.2387 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883847 SAMN31891779 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.722 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 133629.0823 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883848 SAMN31891780 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.25 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100951.3543 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883849 SAMN31891781 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.925 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 164270.0288 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883850 SAMN31891584 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.012 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 89709.90543 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883851 SAMN31891782 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.69 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 303720.5691 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883852 SAMN31891783 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.79 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 156503.7458 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883853 SAMN31891784 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.838 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 57978.582610000005 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883854 SAMN31891785 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.3 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 63937.87092 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883855 SAMN31891786 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 57.5 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 85597.37733999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883856 SAMN31891787 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.995999999999999 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 203171.3431 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883857 SAMN31891788 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.8 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 139542.4842 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883858 SAMN31891789 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-07 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 142138.9905 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211007 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883859 SAMN31891790 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.79 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 244380.6203 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883860 SAMN31891791 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.59 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 308896.5263 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883861 SAMN31891585 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.366 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 185698.1146 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883862 SAMN31891793 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.3 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 222800.1307 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883863 SAMN31891792 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7203 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 74159.71361 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883864 SAMN31891794 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 54.7 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 321375.2957 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883865 SAMN31891795 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.715 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 376513.1852 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883866 SAMN31891796 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.475 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 381752.489 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211111 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883867 SAMN31891797 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.071000000000001 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 122991.3598 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883868 SAMN31891798 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.642062 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 286089.6945 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883869 SAMN31891799 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.2 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87460.09946 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883870 SAMN31891800 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.34 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46081.580219999996 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883871 SAMN31891801 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.0997 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 41695.417010000005 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883872 SAMN31891586 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.91 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 171854.8595 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883873 SAMN31891802 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.13 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 217434.4541 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883874 SAMN31891803 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.58 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 225660.7922 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883875 SAMN31891804 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.744 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 205665.5823 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883876 SAMN31891805 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.716 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 179433.609 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883877 SAMN31891806 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.02 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87845.39442000001 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883878 SAMN31891808 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.07 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 62510.4005 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883879 SAMN31891807 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.7 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 266511.3153 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883880 SAMN31891809 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5865 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 78073.93987999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883881 SAMN31891810 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.8 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 107645.597 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883882 SAMN31891811 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 56.7 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 114363.8374 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883883 SAMN31891725 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.78 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 412615.9721 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883884 SAMN31891726 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.26 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 327015.1683 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883885 SAMN31891727 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.824 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 154337.8475 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883886 SAMN31891728 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0039999999999996 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 206776.2261 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883887 SAMN31891730 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.65 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 288741.8528 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883888 SAMN31891729 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.73 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 153289.2553 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883889 SAMN31891731 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.7 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 272184.9539 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883890 SAMN31891732 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.9846 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42669.01784 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883891 SAMN31891579 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5429999999999999 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 239763.1005 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883892 SAMN31891733 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.927 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 281596.6531 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883893 SAMN31891734 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.6 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 312501.0227 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883894 SAMN31891735 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.569 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 302299.5144 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883895 SAMN31891736 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.535 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 398481.1359 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211028 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883896 SAMN31891737 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.81 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 168592.9759 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883897 SAMN31891738 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.0489999999999995 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 136408.7573 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883898 SAMN31891739 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.16 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 433584.3395 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883899 SAMN31891740 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 28.34 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 284309.3861 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883900 SAMN31891741 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.082 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 92163.81558 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883901 SAMN31891580 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.08 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 132423.5703 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883902 SAMN31891742 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.33 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 163048.9803 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883903 SAMN31891743 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.83 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 215607.2541 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883904 SAMN31891744 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.35 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 394354.7309 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883905 SAMN31891745 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.94 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 243529.9951 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883906 SAMN31891746 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-15 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.538 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 237508.3676 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211115 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883907 SAMN31891607 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.66 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 384030.792 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883908 SAMN31891608 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.24 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 254600.1606 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883909 SAMN31891609 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.53 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 256370.8758 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883910 SAMN31891610 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.42 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 281747.6485 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883911 SAMN31891611 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.824 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190453.2536 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883912 SAMN31891567 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.082 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 112829.987 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883913 SAMN31891612 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.848 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 131438.4758 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883914 SAMN31891614 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.967 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 123939.0847 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883915 SAMN31891613 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.498 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 129959.8318 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883916 SAMN31891615 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.11 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110287.8937 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883917 SAMN31891616 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82603.09631000001 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883918 SAMN31891617 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.91 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 277624.7829 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883919 SAMN31891619 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.85 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 146838.0844 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883920 SAMN31891618 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.44 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 313784.9461 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883921 SAMN31891620 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.92 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 139367.0505 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883922 SAMN31891621 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5339 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39357.91142 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883923 SAMN31891568 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.328 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 331963.5829 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SH20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883924 SAMN31891622 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.423 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19508.023540000002 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883925 SAMN31891623 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.7 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 155023.8534 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883926 SAMN31891624 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 26.4 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 131766.67 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883927 SAMN31891625 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 56.4 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 138998.0688 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883928 SAMN31891626 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 55.8 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 99230.99962999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883929 SAMN31891627 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.815 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 217438.9683 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883930 SAMN31891628 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.991 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 192145.3443 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883931 SAMN31891651 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883932 SAMN31891571 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.71 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 1568236.352 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883933 SAMN31891653 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0009 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 326378.7424 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883934 SAMN31891652 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-09-28 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20210928 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883935 SAMN31891654 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.39 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 125068.6608 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883936 SAMN31891655 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.87981 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 99988.23585 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883937 SAMN31891656 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.72 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 281185.31899999996 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883938 SAMN31891657 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.86 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 248323.9882 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883939 SAMN31891658 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.14 instantaneous_flow NaN ww_population 17997 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 102596.0094 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SG20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883940 SAMN31891659 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.99 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 95527.98082000001 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SI20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883941 SAMN31891661 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.63 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 245655.6857 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883942 SAMN31891660 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-18 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.19 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250631.4959 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211118 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883943 SAMN31891587 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.51 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 348273.7093 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SJ20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883944 SAMN31891812 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.88 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 81970.49502999999 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883945 SAMN31891813 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-11 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 129964.4696 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211011 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883946 SAMN31891588 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.64 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 252295.6662 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SK20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883947 SAMN31891589 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.4744 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 117700.1694 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SL20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883948 SAMN31891590 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.2 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 117646.12400000001 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SM20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883949 SAMN31891591 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 55.6 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 182365.8415 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SN20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883950 SAMN31891565 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.7 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 431491.0517 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SD20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883951 SAMN31891592 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.899000000000001 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 257053.9585 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SO20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883952 SAMN31891593 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.86 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 152251.785 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SP20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883953 SAMN31891595 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.9270000000000005 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220569.4199 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883954 SAMN31891594 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.3 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 256893.237 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SR20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883955 SAMN31891596 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.6 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 532740.9312 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211108 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883956 SAMN31891597 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.63 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 162876.7246 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883957 SAMN31891598 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.987 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 178063.3674 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LA20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883958 SAMN31891599 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5870000000000001 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 480638.6361 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883959 SAMN31891600 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.747 instantaneous_flow NaN ww_population 9292 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 155731.3607 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LB20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883960 SAMN31891601 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.2 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 206318.4512 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883961 SAMN31891566 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-11-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 26.75 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 418773.439 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SE20211104 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883962 SAMN31891602 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.2 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 35917.671630000004 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id LC20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883963 SAMN31891603 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0009 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 259404.2456 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SA20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883964 SAMN31891604 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.41 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51142.61318 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SB20211018 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883965 SAMN31891605 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-14 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.922999999999999 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42413.30409 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211014 BioSampleModel SARS-CoV-2: wastewater surveillance SRS15883966 SAMN31891606 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2021-10-18 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.053 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19147.53052 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene n1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE ww_surv_system_sample_id SC20211018 BioSampleModel SARS-CoV-2: wastewater surveillance