<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX18412618" alias="GSM6761427_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412618</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761427_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761427: non-treated 4 h biol rep 1 [C4h1]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895635">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895635</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761427</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761427</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412619" alias="GSM6761428_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412619</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761428_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761428: non-treated 4 h biol rep 2 [C4h2]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895636">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895636</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761428</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761428</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412620" alias="GSM6761429_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412620</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761429_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761429: non-treated 4 h biol rep 3 [C4h3]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895637">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895637</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761429</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761429</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412621" alias="GSM6761430_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412621</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761430_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761430: STm-delta-aroA 4 h biol rep 1 [S4h1]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895638">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895638</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761430</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761430</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412622" alias="GSM6761431_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412622</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761431_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761431: STm-delta-aroA 4 h biol rep 2 [S4h2]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895639">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895639</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761431</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761431</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412623" alias="GSM6761432_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412623</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761432_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761432: STm-delta-aroA 4 h biol rep 3 [S4h3]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895642">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895642</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761432</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761432</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412624" alias="GSM6761433_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412624</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761433_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761433: non-treated 16 h biol rep 1 [C16h1]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895640">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895640</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761433</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761433</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412625" alias="GSM6761434_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412625</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761434_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761434: non-treated 16 h biol rep 2 [C16h2]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895641">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895641</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761434</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761434</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412626" alias="GSM6761435_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412626</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761435_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761435: non-treated 16 h biol rep 3 [C16h3]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895643">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895643</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761435</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761435</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412627" alias="GSM6761436_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412627</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761436_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761436: STm-delta-aroA 16 h biol rep 1 [S16h1]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895644">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895644</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761436</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761436</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412628" alias="GSM6761437_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412628</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761437_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761437: STm-delta-aroA 16 h biol rep 2 [S16h2]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895645">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895645</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761437</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761437</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18412629" alias="GSM6761438_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18412629</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM6761438_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM6761438: STm-delta-aroA 16 h biol rep 3 [S16h3]; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP410426">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410426</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA906504</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS15895646">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15895646</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM6761438</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM6761438</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Live CD4+ T cells were sorted on a FACS Aria cell sorter and collected into eppendorfs. Cells were lysed in 100uL extraction buffer using PicoPure RNA extraction kit according to manufacturer's instructions. An on column DNase digest was performed. Libraries were constructed using Lexogen Quantseq 3' mRNA Forward kits according to the manufacturer's instructions using a starting amount of 5ng of RNA and UMIs 3' mRNA-seq FWD UMI</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
