CDC Sars CoV2 Sequencing Baseline Constellation

SRS15902365 SAMN31918712 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937476/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.698 lineage/clade name CA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902366 SAMN31918711 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937478/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.824 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902367 SAMN31918309 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937479/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.824 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902368 SAMN31918308 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937480/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.115 lineage/clade name BF.7.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902369 SAMN31917576 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0937481/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.383 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.148 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902370 SAMN31918307 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937484/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.334 lineage/clade name BA.5.2.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902371 SAMN31918306 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937485/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.751 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902372 SAMN31918305 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937486/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.858 lineage/clade name BQ.1.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902373 SAMN31918710 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937489/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.521 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.680 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902374 SAMN31918709 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937490/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.926 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.019 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902375 SAMN31918708 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937491/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.132 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.483 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902376 SAMN31917514 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937493/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.042 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.045 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902377 SAMN31917323 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0937494/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.816 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.816 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902378 SAMN31918707 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937496/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.719 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.517 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902379 SAMN31918696 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0937498/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.449 lineage/clade name BA.5.2.36 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902380 SAMN31918706 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937500/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.732 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.934 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902381 SAMN31917341 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937983/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.999 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902382 SAMN31919207 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937985/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.251 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902383 SAMN31919206 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937986/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.588 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.722 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902384 SAMN31919205 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937987/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.875 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902385 SAMN31919204 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937989/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.967 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.997 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902386 SAMN31919203 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937990/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.169 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.563 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.539 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902387 SAMN31919202 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937991/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.674 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.073 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902388 SAMN31917446 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937992/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.301 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.050 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902389 SAMN31917903 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937994/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.385 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.341 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902390 SAMN31917902 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937995/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.325 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902391 SAMN31917901 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937996/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.328 lineage/clade name BA.5.2.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902392 SAMN31917900 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937997/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.883 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.466 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902393 SAMN31917899 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937998/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.581 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.385 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.184 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902394 SAMN31917898 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937999/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.396 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902395 SAMN31917565 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0938001/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.821 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902396 SAMN31917340 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938002/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.376 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902397 SAMN31917339 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938003/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.357 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.768 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902398 SAMN31917897 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938005/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.101 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902399 SAMN31919201 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938006/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.309 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902400 SAMN31917896 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938007/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.236 lineage/clade name BA.5.2.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902401 SAMN31917338 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938010/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.053 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902402 SAMN31918902 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938011/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.128 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902403 SAMN31917320 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WY-CDC-LC0938012/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Wyoming host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.462 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902404 SAMN31918901 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938014/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.338 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902405 SAMN31917337 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938016/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.612 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.705 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902406 SAMN31918698 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0938017/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.831 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.442 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902407 SAMN31918130 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938018/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.800 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902408 SAMN31918129 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938019/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.593 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902409 SAMN31918128 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938020/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.697 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902410 SAMN31918692 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938022/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.161 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902411 SAMN31918127 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938023/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.540 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902412 SAMN31918691 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938024/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.410 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902413 SAMN31918997 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938177/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.352 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.748 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902414 SAMN31918996 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938179/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.285 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.250 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902415 SAMN31918995 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938184/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902416 SAMN31917805 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938186/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.090 lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902417 SAMN31917804 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938190/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.691 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.034 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902418 SAMN31917803 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938192/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.934 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902419 SAMN31917433 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938193/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.283 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902420 SAMN31917802 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938194/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.259 lineage/clade name BF.11.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902421 SAMN31917432 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938195/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.774 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.666 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902422 SAMN31918125 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938197/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.431 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902423 SAMN31918256 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0938198/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.413 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902424 SAMN31919195 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938199/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.171 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.354 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902425 SAMN31919194 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938201/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.248 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902426 SAMN31919193 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938202/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.593 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.130 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902427 SAMN31919192 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938203/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.891 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902428 SAMN31919191 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938204/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.655 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.765 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902429 SAMN31919190 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938205/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.626 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902430 SAMN31917431 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938206/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.976 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.491 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902431 SAMN31919189 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938207/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.809 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.128 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902432 SAMN31919188 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938211/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.604 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902433 SAMN31919187 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938217/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.365 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902434 SAMN31918697 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0938218/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.714 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.619 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.270 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902435 SAMN31918994 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938219/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.662 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902436 SAMN31917801 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938220/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.603 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.117 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.749 lineage/clade name BA.5.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902437 SAMN31917442 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938221/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.58 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.809 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902438 SAMN31919186 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938225/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.065 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.931 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902439 SAMN31917579 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0938226/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.514 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902440 SAMN31917441 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938227/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.734 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902441 SAMN31919185 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938230/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.893 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902442 SAMN31919184 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938239/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.734 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902443 SAMN31919183 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938240/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.053 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.761 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902444 SAMN31919182 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938242/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.980 lineage/clade name BA.2.75.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902445 SAMN31918890 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938347/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.521 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902446 SAMN31917857 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938348/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.412 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.665 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902447 SAMN31917856 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938350/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.745 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.210 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902448 SAMN31918889 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938351/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.126 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.551 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902449 SAMN31918888 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938352/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.194 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.924 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902450 SAMN31917855 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938353/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.807 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902451 SAMN31917854 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938354/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.440 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902452 SAMN31917853 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938355/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.82 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.333 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902453 SAMN31919169 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938356/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.29 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.265 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902454 SAMN31917852 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938357/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.837 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902455 SAMN31917851 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938358/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.767 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902456 SAMN31917850 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938359/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.338 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902457 SAMN31917849 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938360/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.045 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.672 lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902458 SAMN31917848 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938362/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.246 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.361 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902459 SAMN31917847 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938363/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.356 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.288 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902460 SAMN31919168 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938364/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.842 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.232 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902461 SAMN31919167 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938366/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.898 lineage/clade name BA.2.75.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902462 SAMN31917846 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938367/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.332 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.038 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902463 SAMN31917845 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938368/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.901 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902464 SAMN31919166 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938369/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.587 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902465 SAMN31919165 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938370/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.427 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902466 SAMN31917793 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938371/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.257 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.428 lineage/clade name CK.2.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902467 SAMN31917429 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938373/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.969 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.944 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902468 SAMN31917792 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938374/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.045 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.021 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902469 SAMN31917791 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938375/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.423 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.634 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902470 SAMN31917790 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938376/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.310 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902471 SAMN31917439 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938378/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.597 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902472 SAMN31917844 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938379/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.676 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902473 SAMN31919163 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938390/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.407 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.686 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902474 SAMN31919164 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938388/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.163 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902475 SAMN31919161 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938393/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.919 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.587 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902476 SAMN31919162 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938391/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.099 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902477 SAMN31918990 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938478/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.449 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902478 SAMN31918989 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938479/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.960 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902479 SAMN31918988 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938480/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.477 lineage/clade name BQ.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902480 SAMN31918986 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938482/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.841 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902481 SAMN31918987 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938481/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.433 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902482 SAMN31918984 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938484/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.292 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902483 SAMN31918983 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938486/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.833 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.202 lineage/clade name BA.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902484 SAMN31918985 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938483/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.036 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902485 SAMN31918982 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938489/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.372 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.943 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.052 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902486 SAMN31918981 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938491/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.014 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.273 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902487 SAMN31918980 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938492/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.116 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.323 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.851 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902488 SAMN31918979 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938494/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902489 SAMN31918978 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938496/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902490 SAMN31918977 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938499/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902491 SAMN31918976 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938500/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902492 SAMN31918975 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938501/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.176 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.535 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902493 SAMN31918974 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938502/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902494 SAMN31918973 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938504/2022 collected_by Laboratory Corporation of America collection_date 2022-11-08 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902495 SAMN31918972 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938506/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902496 SAMN31918971 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938507/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.084 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.297 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902497 SAMN31918970 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938511/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.205 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902498 SAMN31918969 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938512/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.845 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.025 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902499 SAMN31918968 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938513/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.835 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.097 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902500 SAMN31918967 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938514/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.226 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.737 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.778 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902501 SAMN31918965 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938517/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902502 SAMN31918966 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938515/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.459 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902503 SAMN31918964 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938518/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902504 SAMN31918963 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938519/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902505 SAMN31918962 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938520/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902506 SAMN31918961 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938521/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902507 SAMN31918960 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938522/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902508 SAMN31918959 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938523/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902509 SAMN31917416 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935298/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902510 SAMN31918783 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935299/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.242 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902511 SAMN31917415 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935303/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.166 lineage/clade name BW.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902512 SAMN31917414 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935305/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.486 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902513 SAMN31918216 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935306/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.469 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902514 SAMN31918782 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935310/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.009 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.589 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902515 SAMN31918781 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935312/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.351 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.201 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902516 SAMN31918215 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935311/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.037 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902517 SAMN31917458 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0935314/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.782 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.651 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.086 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902518 SAMN31918780 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935313/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.522 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.968 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902519 SAMN31918214 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935316/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902520 SAMN31917563 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935318/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902521 SAMN31918213 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935317/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902522 SAMN31918114 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935319/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902523 SAMN31918779 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935322/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.62 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.065 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902524 SAMN31918113 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935320/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902525 SAMN31918778 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935326/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.529 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.803 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.445 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902526 SAMN31918777 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935327/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.811 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902527 SAMN31918776 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935329/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.063 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902528 SAMN31918775 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935330/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.007 lineage/clade name BQ.1.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902529 SAMN31918774 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935331/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.298 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902530 SAMN31918212 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935334/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.643 lineage/clade name BF.7.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902531 SAMN31918211 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935343/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.905 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.349 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902532 SAMN31917785 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935344/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 104 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.392 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902533 SAMN31918773 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935345/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.715 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.692 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902534 SAMN31918772 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935346/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.452 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.036 lineage/clade name CK.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902535 SAMN31918771 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935347/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.312 lineage/clade name CK.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902536 SAMN31918112 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935348/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.777 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.281 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902537 SAMN31918770 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935350/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.659 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.304 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902538 SAMN31918769 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935351/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.931 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.573 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902539 SAMN31918768 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935352/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.619 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902540 SAMN31918767 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935354/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902541 SAMN31918090 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935612/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902542 SAMN31918089 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935614/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902543 SAMN31917751 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935616/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902544 SAMN31917553 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935617/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902545 SAMN31917750 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935618/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902546 SAMN31917552 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935619/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902547 SAMN31918088 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935630/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.757 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.416 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.147 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902548 SAMN31918087 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935631/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.440 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902549 SAMN31918870 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935639/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.131 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902550 SAMN31918086 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935644/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.662 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.562 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902551 SAMN31917749 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935649/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.198 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902552 SAMN31917748 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935650/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.228 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902553 SAMN31917747 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935651/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.790 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902554 SAMN31917746 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935652/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.311 lineage/clade name BQ.1.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902555 SAMN31917745 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935654/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.267 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.128 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902556 SAMN31918085 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935655/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.093 lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902557 SAMN31918084 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935658/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.491 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902558 SAMN31917744 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935660/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.754 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902559 SAMN31917743 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935661/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.306 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.04 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.099 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902560 SAMN31917741 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935663/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.922 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902561 SAMN31917742 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935662/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.337 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902562 SAMN31917740 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935664/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.262 lineage/clade name CA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902563 SAMN31917739 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935666/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.869 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902564 SAMN31917738 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935667/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.540 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902565 SAMN31917737 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935668/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.712 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.311 lineage/clade name BN.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902566 SAMN31917736 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935669/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.376 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902567 SAMN31918083 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935670/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.887 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902568 SAMN31918082 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935671/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.586 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902569 SAMN31918081 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935672/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.216 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.066 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902570 SAMN31918080 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935674/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.665 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.862 lineage/clade name BE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902571 SAMN31918079 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935675/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.972 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.883 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.903 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902572 SAMN31917735 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935673/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.690 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902573 SAMN31917542 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935841/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902574 SAMN31917704 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935842/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902575 SAMN31918044 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935843/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902576 SAMN31918043 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935845/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.532 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902577 SAMN31918862 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935847/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.962 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902578 SAMN31917493 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935864/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902579 SAMN31918802 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935870/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BL.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902580 SAMN31917703 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935880/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.006 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.096 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902581 SAMN31917702 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935884/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.501 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.187 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902582 SAMN31918042 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935889/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.052 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.655 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902583 SAMN31918041 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935896/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.199 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.765 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902584 SAMN31918120 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0935897/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.503 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902585 SAMN31918040 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935900/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902586 SAMN31918801 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935901/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902587 SAMN31918800 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935902/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902588 SAMN31918799 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935903/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902589 SAMN31917700 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935907/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.718 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902590 SAMN31917701 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935906/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.544 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902591 SAMN31918798 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935910/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.531 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902592 SAMN31917699 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935912/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.063 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.693 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902593 SAMN31918039 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935913/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902594 SAMN31918038 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935915/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CA.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902595 SAMN31917698 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935918/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.704 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902596 SAMN31917697 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935922/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.065 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.152 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902597 SAMN31918037 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935928/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.444 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902598 SAMN31917696 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935931/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.619 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902599 SAMN31918036 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935935/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 97 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902600 SAMN31918035 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935936/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902601 SAMN31918034 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935939/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.459 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.520 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902602 SAMN31918033 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935940/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.339 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.279 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902603 SAMN31918861 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935941/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.958 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.667 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.066 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902604 SAMN31917695 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935942/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.419 lineage/clade name BA.4.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902605 SAMN31918001 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936111/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.954 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902606 SAMN31918797 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0936114/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.484 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902607 SAMN31918000 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936115/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.279 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902608 SAMN31917999 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936116/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.201 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.857 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.364 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902609 SAMN31918119 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0936119/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.984 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.449 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902610 SAMN31918856 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936122/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.803 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902611 SAMN31917998 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936123/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.383 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902612 SAMN31918855 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936124/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.201 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.360 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902613 SAMN31918118 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0936125/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.926 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902614 SAMN31917997 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936126/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.454 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902615 SAMN31917643 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936127/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.759 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902616 SAMN31917996 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936128/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.652 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902617 SAMN31918854 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936129/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902618 SAMN31918853 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936130/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902619 SAMN31917642 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936131/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902620 SAMN31918852 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936133/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902621 SAMN31917641 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936134/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902622 SAMN31918851 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936135/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902623 SAMN31917640 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936137/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.728 lineage/clade name BQ.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902624 SAMN31917639 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936138/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.200 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902625 SAMN31917638 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936143/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.579 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.744 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.896 lineage/clade name BA.5.2.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902626 SAMN31917534 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936145/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.105 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.969 lineage/clade name BS.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902627 SAMN31917637 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936146/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.130 lineage/clade name BN.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902628 SAMN31917533 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936147/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.843 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902629 SAMN31917635 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936151/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.066 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902630 SAMN31917636 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936149/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.791 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902631 SAMN31917994 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936157/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.034 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902632 SAMN31917995 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936155/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.641 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.769 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902633 SAMN31917532 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936158/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902634 SAMN31917634 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936161/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902635 SAMN31917633 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936163/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902636 SAMN31917632 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936164/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902637 SAMN31918825 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936481/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.750 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902638 SAMN31917389 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936490/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.282 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.011 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902639 SAMN31918824 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936492/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.867 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902640 SAMN31917464 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936501/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.926 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902641 SAMN31918823 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936503/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.873 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.533 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902642 SAMN31918280 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936505/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.86 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.055 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902643 SAMN31918279 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936506/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.365 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.451 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.763 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902644 SAMN31917388 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936508/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.906 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.446 lineage/clade name BE.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902645 SAMN31918185 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936510/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.4 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.586 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902646 SAMN31917463 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936509/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.671 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902647 SAMN31917387 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936513/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.865 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.090 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902648 SAMN31918278 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936516/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.816 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.966 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902649 SAMN31917386 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936523/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.562 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902650 SAMN31918277 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936524/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.880 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902651 SAMN31917385 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936527/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.741 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.921 lineage/clade name XBB BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902652 SAMN31918276 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936529/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.37 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.851 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902653 SAMN31917384 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936538/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.988 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.395 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902654 SAMN31918184 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936541/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.403 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.559 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902655 SAMN31918182 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936546/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.921 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.174 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902656 SAMN31918183 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936542/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.897 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.691 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902657 SAMN31918755 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936547/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.724 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BE.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902658 SAMN31918754 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936550/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.569 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902659 SAMN31918753 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936551/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.247 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902660 SAMN31918752 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936553/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.074 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902661 SAMN31918181 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936557/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902662 SAMN31918180 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936559/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902663 SAMN31917383 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936560/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.773 lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902664 SAMN31917382 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936563/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.717 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902665 SAMN31917381 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936568/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.076 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.548 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902666 SAMN31918275 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936564/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.535 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902667 SAMN31918179 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936570/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.87 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.297 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902668 SAMN31918178 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936574/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.337 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902669 SAMN31918843 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936777/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.338 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902670 SAMN31918842 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936778/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.342 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902671 SAMN31917951 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936779/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902672 SAMN31917950 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936782/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902673 SAMN31918841 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936781/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902674 SAMN31917519 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936784/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902675 SAMN31917948 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936786/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.155 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902676 SAMN31917949 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936785/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.408 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.915 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.492 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902677 SAMN31917477 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936789/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902678 SAMN31917947 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936792/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902679 SAMN31917476 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936791/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902680 SAMN31918116 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0936793/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902681 SAMN31918302 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0936801/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902682 SAMN31917946 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936796/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902683 SAMN31917945 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936803/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.081 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.642 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902684 SAMN31917590 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936804/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.525 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902685 SAMN31917374 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936809/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902686 SAMN31918271 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936813/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902687 SAMN31918272 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936811/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902688 SAMN31918750 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936814/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902689 SAMN31918270 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936817/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902690 SAMN31918170 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936819/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.513 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902691 SAMN31918169 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936821/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.124 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902692 SAMN31918269 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936822/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902693 SAMN31917373 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936828/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 92 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902694 SAMN31918822 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936830/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.847 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902695 SAMN31918821 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936831/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.123 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902696 SAMN31917372 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936832/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.438 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902697 SAMN31918168 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936833/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902698 SAMN31918167 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936834/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902699 SAMN31918166 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936841/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902700 SAMN31918165 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936842/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902701 SAMN31917620 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936227/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.669 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902702 SAMN31917619 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936229/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.618 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902703 SAMN31917618 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936231/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.613 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902704 SAMN31918850 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936256/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.565 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902705 SAMN31917528 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936303/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902706 SAMN31917527 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936326/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.286 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.371 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902707 SAMN31918826 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936329/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.508 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.515 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902708 SAMN31918203 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936334/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.909 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.864 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.728 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902709 SAMN31918202 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936351/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.030 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902710 SAMN31917402 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936350/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.905 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902711 SAMN31917465 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936354/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.493 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.621 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902712 SAMN31918288 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936360/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.403 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902713 SAMN31918287 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936363/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.902 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.059 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902714 SAMN31917400 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936365/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.641 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.362 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902715 SAMN31917401 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936364/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.237 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902716 SAMN31918760 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936370/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.084 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.382 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.248 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902717 SAMN31918729 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0936371/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.883 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902718 SAMN31918201 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936372/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.651 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902719 SAMN31918200 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936377/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.948 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902720 SAMN31918199 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936378/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.937 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.153 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902721 SAMN31919288 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0936382/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.779 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.529 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902722 SAMN31918728 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0936383/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.595 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.795 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902723 SAMN31918759 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936385/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.338 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902724 SAMN31919287 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0936384/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.786 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.930 lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902725 SAMN31918758 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936386/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.137 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.790 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902726 SAMN31917399 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936392/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.830 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902727 SAMN31918286 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936393/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.274 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.083 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902728 SAMN31918285 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936394/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.507 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.536 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902729 SAMN31919286 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0936395/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.161 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.579 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902730 SAMN31918718 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0936396/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.987 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902731 SAMN31918727 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0936397/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.757 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902732 SAMN31918198 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936400/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.617 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902733 SAMN31918848 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936648/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902734 SAMN31917487 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936651/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902735 SAMN31917524 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936657/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902736 SAMN31917614 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936660/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902737 SAMN31917968 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936661/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902738 SAMN31917967 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936665/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902739 SAMN31917486 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936666/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902740 SAMN31917966 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936669/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902741 SAMN31917965 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936670/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902742 SAMN31917964 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936671/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902743 SAMN31917963 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936674/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BN.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902744 SAMN31917613 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936675/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902745 SAMN31917523 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936678/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902746 SAMN31917962 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936688/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.768 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902747 SAMN31917522 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936679/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902748 SAMN31918847 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936691/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.723 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.083 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902749 SAMN31917612 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936692/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.738 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.159 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902750 SAMN31917961 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936695/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902751 SAMN31917485 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936697/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902752 SAMN31917611 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936699/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902753 SAMN31917960 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936701/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902754 SAMN31917484 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936702/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902755 SAMN31918846 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936703/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902756 SAMN31917483 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936706/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902757 SAMN31918845 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936707/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902758 SAMN31917959 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936713/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.089 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902759 SAMN31917610 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936714/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.227 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.631 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.345 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902760 SAMN31917609 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936717/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902761 SAMN31917521 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936718/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902762 SAMN31917958 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936720/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902763 SAMN31917608 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936722/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902764 SAMN31917957 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936723/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902765 SAMN31918151 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936899/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902766 SAMN31918738 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936906/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.355 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902767 SAMN31918739 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936905/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.701 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902768 SAMN31917365 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936908/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902769 SAMN31917364 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936909/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902770 SAMN31918150 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936910/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902771 SAMN31918149 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936911/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902772 SAMN31918148 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936912/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902773 SAMN31918820 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936913/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.358 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902774 SAMN31918266 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936915/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.792 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902775 SAMN31918794 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0936917/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.049 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902776 SAMN31917363 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936918/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.399 lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902777 SAMN31917362 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936920/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.022 lineage/clade name CH.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902778 SAMN31918265 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936921/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.235 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902779 SAMN31917361 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936922/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.315 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902780 SAMN31917360 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936923/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902781 SAMN31917359 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936924/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902782 SAMN31917358 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936928/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902783 SAMN31918819 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936932/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.349 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902784 SAMN31918147 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936931/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902785 SAMN31917357 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936933/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.29 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.360 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902786 SAMN31917826 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0936936/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902787 SAMN31919142 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0936934/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902788 SAMN31917589 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936939/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902789 SAMN31918818 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936940/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.005 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.539 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.811 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902790 SAMN31918817 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936941/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.725 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.477 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902791 SAMN31918816 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936943/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.489 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.644 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902792 SAMN31918815 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936944/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.317 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902793 SAMN31918264 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936946/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902794 SAMN31918146 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936947/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902795 SAMN31918145 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936953/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902796 SAMN31918737 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936956/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.677 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.542 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902797 SAMN31919276 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937170/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.300 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902798 SAMN31917822 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937173/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.427 lineage/clade name CK.2.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902799 SAMN31919275 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937174/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.652 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.849 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.496 lineage/clade name CP.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902800 SAMN31919274 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937176/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.158 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.374 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902801 SAMN31917821 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937175/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.791 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902802 SAMN31917820 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937177/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.408 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.198 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902803 SAMN31919273 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937181/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.426 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.522 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.819 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902804 SAMN31917819 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937178/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.016 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902805 SAMN31919272 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937182/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.142 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902806 SAMN31919271 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937183/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902807 SAMN31917457 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937184/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.183 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.240 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902808 SAMN31917456 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937185/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.145 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902809 SAMN31919270 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937189/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.293 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902810 SAMN31917928 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937191/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.214 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902811 SAMN31917929 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937190/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.301 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.696 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902812 SAMN31919269 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937193/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.653 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.125 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902813 SAMN31917927 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937194/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.743 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.238 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902814 SAMN31917455 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937195/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.421 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902815 SAMN31919268 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937196/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.25 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.684 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902816 SAMN31919267 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937197/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.44 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.112 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902817 SAMN31918693 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0937199/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.406 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902818 SAMN31918905 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937201/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.269 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.540 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902819 SAMN31918261 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC0937203/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.540 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902820 SAMN31919266 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937204/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.200 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902821 SAMN31919141 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937205/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.581 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.221 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902822 SAMN31919265 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937206/2022 collected_by Laboratory Corporation of America collection_date 2022-11-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.054 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.024 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.631 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902823 SAMN31919264 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937207/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.164 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902824 SAMN31919263 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937208/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.524 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.881 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902825 SAMN31919262 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937209/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.850 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902826 SAMN31917926 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937211/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.577 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.102 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902827 SAMN31917925 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937212/2022 collected_by Laboratory Corporation of America collection_date 2022-11-08 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.762 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902828 SAMN31919261 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937213/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.283 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.513 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902829 SAMN31919093 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937370/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.249 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902830 SAMN31919092 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937373/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.05 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.767 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.378 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902831 SAMN31919091 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937374/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.378 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.454 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.044 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902832 SAMN31919090 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937376/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.159 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902833 SAMN31919089 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937381/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.914 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.302 lineage/clade name CA.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902834 SAMN31919088 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937382/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.008 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.583 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902835 SAMN31919087 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937383/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.213 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902836 SAMN31919235 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937386/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.122 lineage/clade name CR.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902837 SAMN31919086 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937388/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.343 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902838 SAMN31919085 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937390/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.653 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.206 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902839 SAMN31919084 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937391/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.072 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.652 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.993 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902840 SAMN31919083 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937395/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.42 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.683 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.890 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902841 SAMN31919082 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937396/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.235 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.699 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902842 SAMN31919081 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937397/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.537 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.329 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.148 lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902843 SAMN31919080 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937398/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.862 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902844 SAMN31919079 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937399/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.008 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.574 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902845 SAMN31919078 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937400/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.381 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.660 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902846 SAMN31919077 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937403/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.566 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902847 SAMN31919076 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937404/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.362 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902848 SAMN31919075 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937407/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.343 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902849 SAMN31919074 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937408/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.007 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902850 SAMN31919073 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937411/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.513 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.440 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902851 SAMN31919072 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937413/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.148 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.389 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.728 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902852 SAMN31919071 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937414/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.222 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902853 SAMN31919070 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937415/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.381 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902854 SAMN31919069 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937416/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.932 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902855 SAMN31919067 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937421/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.131 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.876 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.888 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902856 SAMN31919068 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937418/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.052 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.616 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902857 SAMN31919066 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937423/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.135 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.315 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902858 SAMN31919065 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937424/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.777 lineage/clade name CP.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902859 SAMN31919064 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937427/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.590 lineage/clade name BQ.1.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902860 SAMN31919063 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937428/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.742 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.195 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.765 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902861 SAMN31919219 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937939/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.469 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902862 SAMN31917910 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937941/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.129 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.185 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902863 SAMN31919218 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937940/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.383 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.974 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902864 SAMN31917449 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937942/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.079 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.228 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.083 lineage/clade name CN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902865 SAMN31917909 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937943/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.45 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.716 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902866 SAMN31919217 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937944/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.861 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.620 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902867 SAMN31917908 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937945/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.118 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902868 SAMN31919216 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937946/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.392 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.927 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.859 lineage/clade name CP.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902869 SAMN31917907 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937947/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.709 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.023 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.822 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902870 SAMN31919215 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937948/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.135 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902871 SAMN31919214 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937949/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.223 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.635 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902872 SAMN31918903 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937950/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.638 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.561 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902873 SAMN31917906 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937952/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.156 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902874 SAMN31917905 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937953/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.559 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.970 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902875 SAMN31917904 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937954/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.312 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.511 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.305 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902876 SAMN31917344 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937961/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.046 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.287 lineage/clade name BA.5.1.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902877 SAMN31917343 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937962/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.741 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.158 lineage/clade name BF.7.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902878 SAMN31917342 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937964/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.496 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.249 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.195 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902879 SAMN31917571 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937965/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.22 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.421 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.525 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902880 SAMN31917570 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937967/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.227 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902881 SAMN31917569 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937968/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.228 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902882 SAMN31917568 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937969/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.751 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902883 SAMN31917448 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937970/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.548 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.894 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902884 SAMN31919213 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937972/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.484 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.523 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902885 SAMN31917567 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937973/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.323 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902886 SAMN31919212 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937975/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.836 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902887 SAMN31919211 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937976/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.03 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.820 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902888 SAMN31919210 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937977/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.829 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902889 SAMN31919209 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937978/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.633 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902890 SAMN31919208 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937979/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.85 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.488 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902891 SAMN31917447 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937981/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.528 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.027 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902892 SAMN31917566 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0937982/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.168 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.062 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902893 SAMN31919028 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938130/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.281 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.560 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902894 SAMN31919026 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938132/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.994 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.346 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902895 SAMN31919027 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938131/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.938 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.893 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.138 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902896 SAMN31919025 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938133/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.844 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.859 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.894 lineage/clade name BF.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902897 SAMN31919024 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938135/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.523 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.179 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902898 SAMN31919023 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938136/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.287 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.698 lineage/clade name BA.5.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902899 SAMN31919022 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938139/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.92 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.264 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902900 SAMN31919021 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938140/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.631 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.671 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902901 SAMN31919020 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938145/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.128 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.211 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902902 SAMN31919019 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938146/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.959 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902903 SAMN31919017 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938148/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.327 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.106 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.382 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902904 SAMN31919018 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938147/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.663 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.738 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902905 SAMN31919016 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938149/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.764 lineage/clade name CK.2.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902906 SAMN31919015 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938150/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.737 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.250 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902907 SAMN31918723 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0938151/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.44 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.138 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.438 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902908 SAMN31919014 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938153/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.048 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.773 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902909 SAMN31919013 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938155/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.125 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.771 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902910 SAMN31919012 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938157/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.139 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.149 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.964 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902911 SAMN31919011 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938158/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.562 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.022 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902912 SAMN31919010 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938159/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.018 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902913 SAMN31919009 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938160/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.407 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902914 SAMN31919008 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938161/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.502 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902915 SAMN31919007 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938162/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.465 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.468 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.191 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902916 SAMN31919006 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938164/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.184 lineage/clade name BM.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902917 SAMN31919005 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938165/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.537 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902918 SAMN31919004 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938169/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.685 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902919 SAMN31919003 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938170/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.021 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.372 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902920 SAMN31919002 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938172/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.820 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902921 SAMN31919001 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938173/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.78 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.094 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902922 SAMN31919000 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938174/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.495 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902923 SAMN31918999 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938175/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.112 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902924 SAMN31918998 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938176/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.012 lineage/clade name CK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902925 SAMN31918944 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938579/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.617 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.444 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902926 SAMN31918943 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938582/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.267 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.474 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902927 SAMN31918942 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938590/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.641 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.055 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.144 lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902928 SAMN31918941 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938591/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.9 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.887 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902929 SAMN31918940 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938592/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.616 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.107 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.996 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902930 SAMN31918939 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938594/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.527 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.562 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902931 SAMN31918938 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938595/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.577 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902932 SAMN31918937 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938596/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.174 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902933 SAMN31918936 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938598/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.561 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902934 SAMN31918935 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938599/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.787 lineage/clade name BA.4.6.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902935 SAMN31918934 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938601/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.236 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.057 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902936 SAMN31918932 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938603/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.316 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.985 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902937 SAMN31918933 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938602/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.998 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902938 SAMN31918931 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938604/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.407 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.002 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.660 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902939 SAMN31918930 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938606/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902940 SAMN31918929 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938607/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902941 SAMN31918928 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938610/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.789 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902942 SAMN31918927 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938618/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.893 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902943 SAMN31918926 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938625/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.305 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.051 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902944 SAMN31918925 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938627/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.425 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902945 SAMN31918924 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938629/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.907 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.075 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902946 SAMN31918923 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938634/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.94 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.688 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902947 SAMN31918921 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938639/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.971 lineage/clade name BN.1.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902948 SAMN31918922 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938637/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.086 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902949 SAMN31918920 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938643/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.092 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902950 SAMN31918919 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938644/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.181 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.104 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902951 SAMN31918917 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938652/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.479 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.699 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902952 SAMN31918918 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938647/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.557 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.592 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902953 SAMN31918916 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938653/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.903 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902954 SAMN31918915 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938656/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902955 SAMN31918914 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938663/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.747 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.656 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902956 SAMN31918793 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935082/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.992 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.153 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902957 SAMN31918792 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935084/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902958 SAMN31918791 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935085/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902959 SAMN31917472 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935095/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902960 SAMN31918241 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935097/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902961 SAMN31917471 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935098/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902962 SAMN31917428 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935101/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902963 SAMN31917427 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935105/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.569 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.684 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902964 SAMN31917426 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935106/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.574 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.684 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902965 SAMN31918789 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935113/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.974 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.221 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902966 SAMN31918790 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935111/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.846 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.653 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902967 SAMN31918788 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935114/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.979 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.609 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.640 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902968 SAMN31917786 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935130/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.177 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.693 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.987 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902969 SAMN31918787 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935131/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.8 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.643 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902970 SAMN31918240 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935138/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.748 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.743 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902971 SAMN31918239 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935139/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.829 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.974 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902972 SAMN31917459 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC0935145/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.143 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902973 SAMN31919290 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0935146/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.305 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902974 SAMN31919289 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC0935149/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.52 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.185 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902975 SAMN31918238 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935151/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.273 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902976 SAMN31918237 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935156/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.11 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.889 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902977 SAMN31917425 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935158/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.639 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.952 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902978 SAMN31918833 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935160/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.869 lineage/clade name BQ.1.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902979 SAMN31918301 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935170/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.489 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.527 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902980 SAMN31918242 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MS-CDC-LC0935171/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Mississippi host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.730 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902981 SAMN31917424 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935172/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.908 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.513 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902982 SAMN31917423 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935179/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.531 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902983 SAMN31918300 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935188/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.295 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.040 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902984 SAMN31918299 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935194/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.54 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.197 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902985 SAMN31917422 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935195/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.380 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902986 SAMN31918832 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935201/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.226 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902987 SAMN31918236 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935202/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.849 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.139 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902988 SAMN31917421 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935203/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.686 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.419 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902989 SAMN31918831 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935211/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.366 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.771 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.107 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902990 SAMN31918830 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935212/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.692 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.999 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902991 SAMN31917470 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935215/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.104 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902992 SAMN31918298 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935216/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.905 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902993 SAMN31918235 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935220/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902994 SAMN31918233 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935224/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902995 SAMN31918234 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935221/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902996 SAMN31918232 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935226/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902997 SAMN31918231 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935227/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902998 SAMN31917420 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935228/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15902999 SAMN31917419 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935232/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903000 SAMN31917418 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935233/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903001 SAMN31917417 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935236/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903002 SAMN31918786 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935237/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903003 SAMN31918230 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935238/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903004 SAMN31918229 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935249/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903005 SAMN31918228 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935251/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903006 SAMN31918785 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935259/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.207 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.692 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903007 SAMN31918784 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935261/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.241 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.168 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903008 SAMN31918227 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935273/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903009 SAMN31917469 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935274/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903010 SAMN31918226 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935276/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903011 SAMN31918225 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935277/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903012 SAMN31918224 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935278/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903013 SAMN31918223 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935283/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903014 SAMN31918221 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935286/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903015 SAMN31918222 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935285/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903016 SAMN31918219 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935288/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903017 SAMN31918220 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935287/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903018 SAMN31918218 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935289/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CP.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903019 SAMN31918291 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935444/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.512 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.562 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903020 SAMN31918217 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935290/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903021 SAMN31917467 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935446/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.622 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.689 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.941 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903022 SAMN31918204 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935447/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.836 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.961 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903023 SAMN31919143 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0935452/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903024 SAMN31917466 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935457/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903025 SAMN31917405 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935458/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903026 SAMN31917404 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935461/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903027 SAMN31918883 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935465/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.838 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.712 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903028 SAMN31918111 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935467/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903029 SAMN31917562 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935466/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903030 SAMN31917784 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935468/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903031 SAMN31917783 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935469/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903032 SAMN31918110 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935470/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903033 SAMN31918109 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935473/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903034 SAMN31917782 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935474/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903035 SAMN31918882 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935477/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.524 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.997 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903036 SAMN31917781 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935478/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.894 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.174 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.096 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903037 SAMN31918881 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935479/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.782 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903038 SAMN31918880 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935480/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.453 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903039 SAMN31918108 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935481/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.635 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.891 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.471 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903040 SAMN31917512 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935482/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.999 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.664 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903041 SAMN31917780 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935483/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.857 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.498 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903042 SAMN31917779 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935484/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.948 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903043 SAMN31918879 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935485/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.276 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.006 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903044 SAMN31918878 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935486/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.728 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903045 SAMN31917778 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935488/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.207 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.746 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903046 SAMN31918107 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935489/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.584 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903047 SAMN31917561 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935490/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.033 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.238 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903048 SAMN31917777 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935491/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.027 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.515 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903049 SAMN31918106 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935492/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.889 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.100 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903050 SAMN31918122 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0935493/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.989 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903051 SAMN31917511 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935494/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.939 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.644 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.211 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903052 SAMN31917763 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935569/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.18 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.647 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.770 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903053 SAMN31917506 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935570/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.034 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903054 SAMN31917762 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935572/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.016 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.926 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.922 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903055 SAMN31917557 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935573/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.167 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.436 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.583 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903056 SAMN31917761 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935576/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.111 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.859 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903058 SAMN31917760 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935579/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903059 SAMN31918098 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935580/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903060 SAMN31917556 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935582/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903061 SAMN31918097 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935581/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903062 SAMN31918876 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935583/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.654 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.354 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903063 SAMN31918096 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935584/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.859 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903064 SAMN31917759 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935585/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.93 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.079 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903065 SAMN31917758 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935586/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.304 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.546 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903066 SAMN31917757 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935587/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.667 lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903067 SAMN31917756 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935588/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.544 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.670 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903068 SAMN31917755 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935589/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.683 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.579 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.952 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903069 SAMN31918095 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935590/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.135 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.572 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.128 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903070 SAMN31918094 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935594/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903071 SAMN31918875 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935597/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903072 SAMN31917754 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935598/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903073 SAMN31918874 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935600/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.469 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.038 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903074 SAMN31918093 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935601/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.658 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.997 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903057 SAMN31917505 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935574/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.220 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903075 SAMN31918873 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935602/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.412 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.725 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.937 lineage/clade name CH.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903076 SAMN31917753 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935604/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.313 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903077 SAMN31918872 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935603/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.548 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903078 SAMN31918092 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935605/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.983 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903079 SAMN31917752 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935606/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.424 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903080 SAMN31918871 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935607/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903081 SAMN31917555 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935608/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903082 SAMN31917554 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935609/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903083 SAMN31918091 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935611/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903084 SAMN31917716 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935793/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.823 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.26 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.568 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903085 SAMN31918058 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935794/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.473 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.054 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.093 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903086 SAMN31917715 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935795/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.051 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.510 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903087 SAMN31917714 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935796/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.787 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.524 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903088 SAMN31917713 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935799/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.398 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903089 SAMN31917712 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935800/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.449 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.655 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903090 SAMN31917711 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935801/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.099 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.682 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903091 SAMN31918057 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935802/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.462 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.368 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.847 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903092 SAMN31918303 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0935803/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.786 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.959 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903093 SAMN31918056 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935805/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903094 SAMN31918055 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935806/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903095 SAMN31918054 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935808/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903096 SAMN31918053 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935810/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.337 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903097 SAMN31918052 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935811/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.382 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903098 SAMN31918051 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935812/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.298 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.488 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903099 SAMN31917547 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935813/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.124 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.898 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903100 SAMN31917710 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935814/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.756 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903101 SAMN31917546 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935815/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.856 lineage/clade name BA.5.1.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903102 SAMN31918050 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935816/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.806 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903103 SAMN31918049 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935817/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.384 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.785 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.579 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903104 SAMN31917708 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935820/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.628 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.414 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903105 SAMN31917709 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935819/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.606 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.975 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903106 SAMN31917707 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935822/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.181 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903107 SAMN31917706 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935824/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.523 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903108 SAMN31917705 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935825/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.034 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.053 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903109 SAMN31918048 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935826/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.104 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.577 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.799 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903110 SAMN31918047 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935827/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903111 SAMN31918046 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935836/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.015 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903112 SAMN31917545 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935835/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903113 SAMN31918045 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935837/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.115 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.524 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903114 SAMN31917544 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935839/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903115 SAMN31917538 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936054/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903116 SAMN31917543 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935840/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903117 SAMN31917663 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936055/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.794 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.641 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903118 SAMN31917537 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936056/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.2 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.701 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903119 SAMN31918005 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936059/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.475 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903120 SAMN31917662 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936062/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.796 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.894 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903121 SAMN31917661 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936064/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.745 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903122 SAMN31917659 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936067/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.062 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.373 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903123 SAMN31917660 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936066/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.419 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.453 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903124 SAMN31917658 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936069/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.531 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903125 SAMN31917657 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936070/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.2 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.33 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.238 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903126 SAMN31917656 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936072/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.700 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903127 SAMN31918004 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936071/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.911 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.804 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903128 SAMN31917655 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936075/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.017 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.324 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903129 SAMN31917654 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936079/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.392 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.522 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903130 SAMN31917653 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936081/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.483 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.347 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903131 SAMN31917652 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936082/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.83 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.754 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903132 SAMN31917651 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936083/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.912 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.083 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903133 SAMN31918003 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936084/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.196 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.538 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903134 SAMN31917535 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936088/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.642 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.341 lineage/clade name BA.5.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903135 SAMN31917536 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936085/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.947 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.229 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903136 SAMN31917492 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936089/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903137 SAMN31918857 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936090/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903138 SAMN31917650 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936092/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903139 SAMN31918002 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936097/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903140 SAMN31917491 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936098/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903141 SAMN31917490 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936101/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903142 SAMN31917649 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936105/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.026 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.209 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903143 SAMN31917648 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936106/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.718 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.973 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903144 SAMN31917647 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936107/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.4 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.482 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903145 SAMN31917646 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936108/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.636 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.122 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.732 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903146 SAMN31917645 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936109/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.519 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903147 SAMN31918197 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936401/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.711 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903148 SAMN31917644 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936110/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.576 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.387 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903149 SAMN31918757 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936402/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.668 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.362 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903150 SAMN31918196 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936403/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.169 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.634 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903151 SAMN31918756 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936405/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.416 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.946 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.040 lineage/clade name BQ.1.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903152 SAMN31918796 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0936413/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.056 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903153 SAMN31918311 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0936414/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.713 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.873 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903154 SAMN31918195 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936416/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.087 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.163 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.577 lineage/clade name CH.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903155 SAMN31918194 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936417/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.283 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.821 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903156 SAMN31917398 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936418/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.923 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.531 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.964 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903157 SAMN31917976 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936422/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.142 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903158 SAMN31917617 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936420/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.053 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903159 SAMN31917526 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936423/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.737 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903160 SAMN31917397 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936428/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903161 SAMN31918193 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936431/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903162 SAMN31918192 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936433/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903163 SAMN31918191 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936435/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903164 SAMN31917396 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936436/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903165 SAMN31917395 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936437/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903166 SAMN31918190 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936438/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903167 SAMN31918189 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936445/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.198 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.609 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903168 SAMN31917394 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936447/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.552 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903169 SAMN31917393 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936448/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.573 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.888 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.828 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903170 SAMN31918284 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936456/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.215 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.95 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.262 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903171 SAMN31918188 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936455/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.138 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903172 SAMN31918187 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936458/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.046 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.365 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903173 SAMN31918186 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936461/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.597 lineage/clade name XBB.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903174 SAMN31918282 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936471/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.213 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.558 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903175 SAMN31918283 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936468/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.706 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.143 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.468 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903176 SAMN31917392 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936474/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.858 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.551 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.007 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903177 SAMN31918281 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936472/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.691 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903178 SAMN31917391 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936475/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.522 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.283 lineage/clade name BF.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903179 SAMN31917390 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936480/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.274 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.289 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.692 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903180 SAMN31917520 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936725/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.8 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903181 SAMN31917607 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936726/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.013 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.465 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903182 SAMN31918260 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0936729/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903183 SAMN31917956 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936730/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903184 SAMN31917606 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936731/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903185 SAMN31917955 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936735/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903186 SAMN31917604 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936742/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.175 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.734 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903187 SAMN31917605 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936739/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.245 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.726 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903188 SAMN31917603 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936744/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.736 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903189 SAMN31917602 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936745/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.432 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.999 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903190 SAMN31917601 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936746/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.917 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.993 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903191 SAMN31917600 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936748/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.261 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.964 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903192 SAMN31917599 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936749/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.649 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903193 SAMN31917598 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936750/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.354 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.805 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903194 SAMN31917597 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936751/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.366 lineage/clade name CK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903195 SAMN31917482 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936752/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.604 lineage/clade name XBB BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903196 SAMN31917481 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936754/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.252 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.110 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903197 SAMN31917480 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936755/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.776 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.364 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.416 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903198 SAMN31918117 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0936756/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.993 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903199 SAMN31917479 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936758/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.062 lineage/clade name BA.5.1.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903200 SAMN31918751 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936759/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.956 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.129 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903201 SAMN31917954 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936760/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.155 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903202 SAMN31917953 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936762/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.373 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.488 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903203 SAMN31917952 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936763/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.51 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.775 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903204 SAMN31917595 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936765/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.61 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.113 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903205 SAMN31917596 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936764/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.106 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903206 SAMN31917594 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936767/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.142 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.749 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903207 SAMN31917593 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936768/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.95 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.568 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.031 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903208 SAMN31917592 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936769/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.842 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.860 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903209 SAMN31917591 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936771/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.097 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903210 SAMN31917478 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936773/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.477 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903211 SAMN31918844 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936775/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.805 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.89 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.314 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903212 SAMN31918736 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936957/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.757 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.459 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903213 SAMN31918735 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936959/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.477 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.612 lineage/clade name CN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903214 SAMN31918734 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936960/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.702 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.253 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.062 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903215 SAMN31917356 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936961/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.616 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903216 SAMN31917577 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0936973/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903217 SAMN31917355 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936974/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.386 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.700 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903218 SAMN31917354 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936975/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.647 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.441 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903219 SAMN31917460 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936981/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903220 SAMN31918814 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936985/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.486 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903221 SAMN31918813 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936986/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.149 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.364 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903222 SAMN31918812 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936987/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.649 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.883 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903223 SAMN31918811 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936988/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.854 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.114 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903224 SAMN31918263 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936989/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.948 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.429 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.524 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903225 SAMN31918810 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936990/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.302 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903226 SAMN31918809 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936992/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.549 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.110 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903227 SAMN31918808 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936994/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.839 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.495 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903228 SAMN31917353 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936995/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.009 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903229 SAMN31918807 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0936996/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.835 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.255 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.403 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903230 SAMN31918144 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936999/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903231 SAMN31917588 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937001/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.829 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.167 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.806 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903232 SAMN31917944 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937003/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.187 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.291 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903233 SAMN31917587 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937005/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BE.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903234 SAMN31917943 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937007/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903235 SAMN31917586 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937008/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.126 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.273 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.134 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903236 SAMN31917942 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937010/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.361 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903237 SAMN31917941 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937011/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.312 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.602 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903238 SAMN31917585 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937012/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.338 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903239 SAMN31917584 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937013/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.262 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.010 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903240 SAMN31917583 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937015/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.966 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.548 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903241 SAMN31918840 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937016/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.63 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.685 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903242 SAMN31917518 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937017/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903243 SAMN31918839 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937022/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.18 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.071 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903244 SAMN31919260 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937214/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.899 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.654 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.945 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903245 SAMN31919259 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937215/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.119 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903246 SAMN31919258 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937216/2022 collected_by Laboratory Corporation of America collection_date 2022-11-08 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.908 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.644 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903247 SAMN31917818 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937217/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.017 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903248 SAMN31917924 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937218/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.608 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.183 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903249 SAMN31917817 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937219/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.315 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.376 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903250 SAMN31917816 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937220/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.154 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.417 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.583 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903251 SAMN31919257 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937222/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.038 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903252 SAMN31917923 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937223/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.19 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.702 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.615 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903253 SAMN31919256 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937224/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.732 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903254 SAMN31919255 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937226/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.94 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.038 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903255 SAMN31919254 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937227/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.807 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.449 lineage/clade name BA.5.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903256 SAMN31917922 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937228/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.609 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903257 SAMN31919253 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937229/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.697 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903258 SAMN31917921 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937232/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.422 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.344 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903259 SAMN31919252 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937233/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.192 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903260 SAMN31918251 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0937235/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.259 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903261 SAMN31918133 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0937236/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.899 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.719 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903262 SAMN31918250 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0937238/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.968 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.990 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903263 SAMN31918722 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0937237/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.478 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.290 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903264 SAMN31919251 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937241/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.965 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903265 SAMN31917815 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937243/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.242 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903266 SAMN31919250 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937245/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.534 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.966 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903267 SAMN31917920 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937246/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.748 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.636 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903268 SAMN31917919 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937247/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.535 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903269 SAMN31919249 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937248/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.256 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.611 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903270 SAMN31917814 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937249/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.357 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.414 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903271 SAMN31917813 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937251/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.941 lineage/clade name BF.11.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903272 SAMN31917812 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937252/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.01 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.019 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.842 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903273 SAMN31919248 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937254/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.082 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903274 SAMN31919247 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937255/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.485 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.358 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.984 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903275 SAMN31917454 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937256/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.797 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903276 SAMN31919062 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937429/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.458 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.991 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903277 SAMN31919061 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937431/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.199 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.683 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903278 SAMN31919060 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937432/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.466 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903279 SAMN31919059 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937438/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.944 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.163 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903280 SAMN31919058 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937439/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.05 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.962 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903281 SAMN31918717 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937444/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.847 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903282 SAMN31918716 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937446/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.097 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.686 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903283 SAMN31917333 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937447/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903284 SAMN31918715 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937449/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903285 SAMN31918714 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937454/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903286 SAMN31918310 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KY-CDC-LC0937456/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903287 SAMN31917515 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937462/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.163 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903288 SAMN31917332 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937463/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.916 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.762 lineage/clade name BF.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903289 SAMN31917331 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937469/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.354 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.58 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.656 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903290 SAMN31918713 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937471/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.279 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.318 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903291 SAMN31918259 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MI-CDC-LC0937474/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.309 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.848 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903292 SAMN31917366 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936880/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.568 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.659 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903293 SAMN31917367 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936878/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.114 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.779 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.541 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903294 SAMN31918747 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936882/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.921 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.436 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903295 SAMN31918746 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936884/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.751 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.001 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.938 lineage/clade name BF.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903296 SAMN31918745 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936885/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.749 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.785 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903297 SAMN31918744 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936886/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.417 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903298 SAMN31918743 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936887/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.558 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.736 lineage/clade name CK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903299 SAMN31918742 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936888/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.604 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.196 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903300 SAMN31918741 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936889/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.183 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903301 SAMN31918740 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936890/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.41 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.787 lineage/clade name BW.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903302 SAMN31918156 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936891/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903303 SAMN31918155 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936892/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.652 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903304 SAMN31918154 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936893/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.184 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.669 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903305 SAMN31918153 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936894/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.48 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.738 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903306 SAMN31918152 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936895/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.824 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.581 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903307 SAMN31918267 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936898/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903308 SAMN31918135 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937118/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903309 SAMN31918134 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937124/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903310 SAMN31917516 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937126/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903311 SAMN31918913 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937131/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.562 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.424 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.351 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903312 SAMN31919285 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937132/2022 collected_by Laboratory Corporation of America collection_date 2022-11-09 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.739 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903313 SAMN31918912 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937133/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.34 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.894 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903314 SAMN31918911 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937134/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.28 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.344 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.902 lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903315 SAMN31918910 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937137/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.428 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.886 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903316 SAMN31918909 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937138/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.598 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.993 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903317 SAMN31917934 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937139/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.949 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.925 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.994 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903318 SAMN31917933 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937140/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.727 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.277 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.007 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903319 SAMN31918908 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937141/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.788 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903320 SAMN31917932 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937143/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.349 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.831 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903321 SAMN31917931 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937144/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.814 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.69 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.771 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903322 SAMN31917930 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937145/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.132 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903323 SAMN31918907 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937146/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.296 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.286 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.262 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903324 SAMN31919284 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937147/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.892 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.821 lineage/clade name BW.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903325 SAMN31917825 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937149/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.529 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.235 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903326 SAMN31919283 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937148/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.254 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.413 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.637 lineage/clade name BA.5.2.33 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903327 SAMN31917824 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937150/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.049 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.176 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.081 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903328 SAMN31919282 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937151/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.030 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903329 SAMN31919281 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937153/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.13 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.504 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903330 SAMN31919280 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937154/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.092 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903331 SAMN31919279 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937155/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.051 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.012 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903332 SAMN31919278 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937157/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.217 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903333 SAMN31919277 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937158/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.865 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.745 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903334 SAMN31918906 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937160/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.386 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903335 SAMN31917438 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0937165/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.408 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903336 SAMN31917350 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937162/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.36 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.480 lineage/clade name BF.7.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903337 SAMN31917437 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0937166/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.069 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.564 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.863 lineage/clade name CK.2.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903338 SAMN31917436 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0937167/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.830 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903339 SAMN31917823 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937169/2022 collected_by Laboratory Corporation of America collection_date 2022-11-10 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.43 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.602 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.896 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903340 SAMN31919125 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937326/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.291 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.323 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903341 SAMN31919124 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937327/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.140 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903342 SAMN31919123 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937329/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.925 lineage/clade name BQ.1.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903343 SAMN31919122 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937331/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.688 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.354 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903344 SAMN31919121 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937332/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.27 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.032 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903345 SAMN31919120 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937333/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.220 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903346 SAMN31919119 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937335/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.000 lineage/clade name BQ.1.19 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903347 SAMN31919118 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937336/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.669 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.496 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.739 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903348 SAMN31919117 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937337/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.954 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.014 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903349 SAMN31919116 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937339/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.209 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.49 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.691 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903350 SAMN31919115 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937340/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.099 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903351 SAMN31919114 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937341/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.871 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.477 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.527 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903352 SAMN31919113 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937342/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.526 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.723 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.524 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903353 SAMN31919112 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937343/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.016 lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903354 SAMN31919111 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937344/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903355 SAMN31919110 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937345/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903356 SAMN31919109 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937346/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.421 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903357 SAMN31919108 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937347/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.455 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.679 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903358 SAMN31919107 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937348/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.729 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.628 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903359 SAMN31919106 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937349/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.046 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903360 SAMN31919105 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937350/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903361 SAMN31919104 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937351/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903362 SAMN31919103 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937352/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903363 SAMN31919102 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937355/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903364 SAMN31919101 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937356/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903365 SAMN31919100 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937357/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903366 SAMN31919099 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937360/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.094 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.24 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.792 lineage/clade name BY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903367 SAMN31919098 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937361/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.819 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.428 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903368 SAMN31919097 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937362/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.902 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903369 SAMN31919096 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937364/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.172 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903370 SAMN31919095 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937366/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.932 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.324 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903371 SAMN31919094 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937368/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.726 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.906 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903372 SAMN31917917 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937902/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.224 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.616 lineage/clade name CD.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903373 SAMN31917916 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937903/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.961 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.050 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903374 SAMN31917915 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937905/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.861 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.964 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.808 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903375 SAMN31919231 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937906/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.708 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.007 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.678 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903376 SAMN31917914 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937907/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.703 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.974 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903377 SAMN31919230 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937908/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.102 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.758 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903378 SAMN31917347 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937909/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.117 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.977 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.623 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903379 SAMN31917346 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937910/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.369 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.351 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903380 SAMN31917345 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937911/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.186 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.979 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.697 lineage/clade name BL.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903381 SAMN31917573 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0937912/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.492 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.480 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903382 SAMN31917452 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937913/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.722 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.866 lineage/clade name BE.1.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903383 SAMN31919229 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937915/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.316 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.762 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903384 SAMN31917451 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937916/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.561 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903385 SAMN31917913 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937917/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.854 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903386 SAMN31919228 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937918/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.875 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.879 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903387 SAMN31919227 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937920/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.611 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.091 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903388 SAMN31917450 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937919/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.546 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.871 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903389 SAMN31919226 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937922/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.182 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.889 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.250 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903390 SAMN31917808 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937921/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.451 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.086 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903391 SAMN31919225 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937923/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.930 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903392 SAMN31919224 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937924/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.965 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.780 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903393 SAMN31917912 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937925/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.104 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903394 SAMN31919223 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937927/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.623 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.855 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.094 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903395 SAMN31917911 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937926/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.204 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.314 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.701 lineage/clade name BA.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903396 SAMN31919222 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937928/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.610 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903397 SAMN31919221 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937929/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.371 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.346 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.916 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903398 SAMN31919220 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937931/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.419 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903399 SAMN31918258 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0937932/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.625 lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903400 SAMN31918132 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0937933/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.681 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.742 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.377 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903401 SAMN31918131 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0937935/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.852 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.617 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903402 SAMN31918257 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0937936/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.427 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.435 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.660 lineage/clade name CP.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903403 SAMN31918904 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0937938/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.8 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.325 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.451 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903404 SAMN31917888 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938075/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.513 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.701 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.199 lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903405 SAMN31917887 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938077/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.399 lineage/clade name BA.5.2.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903406 SAMN31919196 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938081/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.514 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.448 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.813 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903407 SAMN31917886 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938083/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.586 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.916 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903408 SAMN31917885 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938087/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.205 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.159 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.898 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903409 SAMN31919054 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938090/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.817 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.639 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903410 SAMN31919053 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938091/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.352 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.543 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903411 SAMN31919052 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938092/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.144 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.203 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903412 SAMN31919051 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938093/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.848 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.480 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903413 SAMN31919050 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938094/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.074 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903414 SAMN31919049 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938096/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.238 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.033 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903415 SAMN31919048 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938097/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.59 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.130 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903416 SAMN31919047 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938098/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.326 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.913 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903417 SAMN31919046 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938100/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.495 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.679 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.467 lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903418 SAMN31919044 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938104/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.395 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.772 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903419 SAMN31919045 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938102/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.337 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.431 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903420 SAMN31919043 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938105/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.791 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.823 lineage/clade name BA.5.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903421 SAMN31919042 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938108/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903422 SAMN31919041 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938109/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.504 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.672 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.082 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903423 SAMN31919040 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938112/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.273 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.517 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.756 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903424 SAMN31919039 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938113/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.724 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903425 SAMN31919037 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938115/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.06 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.044 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903426 SAMN31919038 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938114/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.868 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.0 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.281 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903427 SAMN31919036 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938116/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.453 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.533 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903428 SAMN31919035 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938119/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.074 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.478 lineage/clade name BM.4.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903429 SAMN31919034 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938120/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.096 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.437 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.043 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903430 SAMN31919033 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938121/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.127 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.828 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903431 SAMN31919032 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938123/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.335 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.771 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903432 SAMN31919031 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938125/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.311 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.657 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903433 SAMN31919030 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938126/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.637 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903434 SAMN31918724 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0938127/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.878 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.554 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.116 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903435 SAMN31919029 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938129/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.881 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.586 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.518 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903436 SAMN31919172 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938289/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.885 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.003 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903437 SAMN31917798 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938292/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.783 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.941 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.447 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903438 SAMN31917797 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938293/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 3 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.517 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903439 SAMN31917796 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938294/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.191 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.667 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903440 SAMN31919171 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938297/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.469 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.860 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903441 SAMN31917795 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938298/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.219 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.158 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903442 SAMN31917864 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938301/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.261 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.639 lineage/clade name BF.7.4.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903443 SAMN31918720 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0938303/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.836 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903444 SAMN31918244 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938304/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.366 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.835 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903445 SAMN31918317 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938305/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.446 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.701 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903446 SAMN31918124 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938306/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.547 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.188 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.129 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903447 SAMN31918315 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938309/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.482 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903448 SAMN31918316 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938308/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.705 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903449 SAMN31918243 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938310/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903450 SAMN31918123 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938311/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.327 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.736 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903451 SAMN31918893 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938314/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.333 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.629 lineage/clade name BA.5.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903452 SAMN31918255 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0938315/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.339 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903453 SAMN31918892 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938316/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.936 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.615 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.145 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903454 SAMN31919170 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938317/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.089 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.464 lineage/clade name BF.21 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903455 SAMN31918254 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0938318/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.674 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.755 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.725 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903456 SAMN31918253 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0938320/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.614 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.192 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.838 lineage/clade name BA.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903457 SAMN31918891 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938321/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.403 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.391 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903458 SAMN31917863 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938324/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.081 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.953 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.314 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903459 SAMN31917862 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938325/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.037 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.619 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903460 SAMN31917336 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938326/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.251 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.406 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.806 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903461 SAMN31917861 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938331/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.558 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.838 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.860 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903462 SAMN31917440 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938332/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.855 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.257 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903463 SAMN31917860 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938333/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.074 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.798 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903464 SAMN31917859 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938335/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.517 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.487 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.260 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903465 SAMN31917794 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938342/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.304 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.669 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903466 SAMN31917858 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938343/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.222 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903467 SAMN31918719 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ID-CDC-LC0938346/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Idaho host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.551 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.491 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.006 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903468 SAMN31919160 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938399/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.275 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.13 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.329 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903469 SAMN31918993 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938406/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.043 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903470 SAMN31919159 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938408/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.197 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903471 SAMN31918887 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938409/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.115 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.629 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.589 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903472 SAMN31918885 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938413/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.671 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903473 SAMN31918886 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938410/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.399 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.235 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903474 SAMN31917843 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938415/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.347 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903475 SAMN31918252 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MN-CDC-LC0938414/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.497 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903476 SAMN31918884 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938417/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.417 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.655 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.160 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903477 SAMN31918314 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938423/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.64 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.476 lineage/clade name BE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903478 SAMN31918313 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938430/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.284 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.625 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903479 SAMN31918312 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938433/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.173 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.023 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903480 SAMN31919158 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938435/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.682 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.735 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.128 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903481 SAMN31919157 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938436/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.498 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903482 SAMN31919156 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938437/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.103 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.005 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903483 SAMN31919155 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938438/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.685 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.347 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.405 lineage/clade name BA.5.2.24 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903484 SAMN31917842 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938439/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.282 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.512 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903485 SAMN31917841 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938444/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.976 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.081 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903486 SAMN31919154 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938442/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.500 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903487 SAMN31919153 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938446/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.808 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.400 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903488 SAMN31917840 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938448/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.034 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.763 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.428 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903489 SAMN31919152 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938450/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.689 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.003 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.391 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903490 SAMN31919151 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938452/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.877 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.705 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903491 SAMN31917839 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938451/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.1 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.746 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.093 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903492 SAMN31919150 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938453/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.685 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903493 SAMN31919149 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938454/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.959 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903494 SAMN31919148 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938455/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.309 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.073 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903495 SAMN31919147 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938461/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.825 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.011 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903496 SAMN31919146 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938463/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.721 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903497 SAMN31917838 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938469/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.716 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.820 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903498 SAMN31918992 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938475/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.736 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.819 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903499 SAMN31918991 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938477/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.201 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903500 SAMN31918958 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938524/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903501 SAMN31918957 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938525/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903502 SAMN31918956 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938526/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903503 SAMN31918955 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938527/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903504 SAMN31918954 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938528/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903505 SAMN31918953 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938534/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903506 SAMN31918952 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938535/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903507 SAMN31917564 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0938538/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.945 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.066 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903508 SAMN31917335 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0938539/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.858 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.175 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903509 SAMN31917789 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938544/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.018 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903510 SAMN31917788 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938548/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.164 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.973 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903511 SAMN31917837 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938549/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.684 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.546 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903512 SAMN31917836 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938550/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.376 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.454 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903513 SAMN31917835 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938551/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.873 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.782 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.931 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903514 SAMN31917834 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938553/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.092 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.798 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903515 SAMN31919145 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938552/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.992 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.726 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903516 SAMN31917833 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938554/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.061 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.106 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903517 SAMN31919144 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938556/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.571 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.935 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903518 SAMN31917832 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938557/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.245 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903519 SAMN31917831 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938558/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.959 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.632 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903520 SAMN31917830 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938559/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.157 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903521 SAMN31917829 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938560/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.722 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.128 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903522 SAMN31917828 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938562/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.029 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.865 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903523 SAMN31917787 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938566/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.406 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.012 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.024 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903524 SAMN31917827 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938567/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.996 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.882 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903525 SAMN31918951 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938570/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.072 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.212 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903526 SAMN31918950 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938571/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.891 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.01 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.039 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903527 SAMN31918949 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938573/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.966 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.959 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903528 SAMN31918948 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938574/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.25 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.328 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903529 SAMN31918946 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938576/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.914 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.120 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903530 SAMN31918947 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938575/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.181 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903531 SAMN31918945 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0938578/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.363 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903532 SAMN31918121 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0935495/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.328 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903533 SAMN31917510 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935498/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.911 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.777 lineage/clade name BU.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903534 SAMN31917509 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935499/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.083 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.011 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.895 lineage/clade name BQ.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903535 SAMN31917508 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935500/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.695 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.332 lineage/clade name CM.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903536 SAMN31918105 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935502/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.38 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.013 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903537 SAMN31917507 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935503/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.73 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.439 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903538 SAMN31918104 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935504/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903539 SAMN31917776 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935511/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.39 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.407 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903540 SAMN31917775 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935518/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.326 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.854 lineage/clade name BA.5.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903541 SAMN31918877 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935516/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.114 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.591 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903542 SAMN31918103 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935521/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.758 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.732 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903543 SAMN31917774 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935527/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.646 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.521 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903544 SAMN31917773 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935529/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.463 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.872 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903545 SAMN31917772 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935530/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.04 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.241 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.793 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903546 SAMN31917771 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935531/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.677 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.658 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903547 SAMN31917770 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935532/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.929 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.924 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903548 SAMN31917769 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935533/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.701 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.079 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.190 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903549 SAMN31918102 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935536/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.071 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.042 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.058 lineage/clade name XBB.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903550 SAMN31918101 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935537/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903551 SAMN31917560 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935538/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903552 SAMN31917768 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935541/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.047 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.703 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903553 SAMN31918100 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935544/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 90 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.61 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.625 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903554 SAMN31917559 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935545/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.506 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.957 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.018 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903555 SAMN31918099 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935546/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.377 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.382 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903556 SAMN31917558 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935549/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.059 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.059 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903557 SAMN31918290 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935552/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.165 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.033 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.481 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903558 SAMN31918827 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935556/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.015 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.153 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903559 SAMN31917403 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935557/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.735 lineage/clade name BN.1.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903560 SAMN31917767 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935561/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.756 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.471 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.070 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903561 SAMN31917766 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935562/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.934 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903562 SAMN31917765 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935563/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.643 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903563 SAMN31917764 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935564/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.237 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.66 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.257 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903564 SAMN31917502 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935737/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903565 SAMN31918067 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935741/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903566 SAMN31917351 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0935739/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903567 SAMN31917501 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935742/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903568 SAMN31917500 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935744/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903569 SAMN31917723 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935749/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.509 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.878 lineage/clade name XBB BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903570 SAMN31917722 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935750/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.507 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.166 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903571 SAMN31918066 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935754/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903572 SAMN31918065 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935755/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.3.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903573 SAMN31918064 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935756/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903574 SAMN31918063 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935758/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903575 SAMN31918062 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935759/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903576 SAMN31917721 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935760/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903577 SAMN31917499 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935762/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903578 SAMN31918061 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935763/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903579 SAMN31917498 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935765/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903580 SAMN31917497 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935766/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.633 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.074 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903581 SAMN31917496 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935767/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.761 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.359 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.593 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903582 SAMN31917495 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935769/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.457 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.336 lineage/clade name BA.5.3.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903583 SAMN31917494 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935770/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.943 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.302 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.835 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903584 SAMN31917720 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935771/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.266 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.226 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.879 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903585 SAMN31917719 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935772/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.155 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903586 SAMN31918866 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935774/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.082 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.596 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903587 SAMN31917548 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935778/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.838 lineage/clade name BA.5.1.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903588 SAMN31918865 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935779/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.518 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.593 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.184 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903589 SAMN31918864 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935780/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.049 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.307 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903590 SAMN31917718 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935781/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.03 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.267 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.747 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903591 SAMN31918863 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935784/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.550 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903592 SAMN31918060 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935787/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.555 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.629 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903593 SAMN31917717 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935789/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.131 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.476 lineage/clade name BA.5.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903594 SAMN31918803 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0935790/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.987 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.668 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903595 SAMN31918059 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935791/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.493 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.76 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.384 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903596 SAMN31917679 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936002/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.533 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.069 lineage/clade name XBB BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903597 SAMN31918859 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936004/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.576 lineage/clade name BF.7.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903598 SAMN31918017 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936005/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.818 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.898 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.260 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903599 SAMN31918016 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936006/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.962 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.56 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.884 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903600 SAMN31918015 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936007/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.476 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.051 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903601 SAMN31917540 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936009/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.491 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.900 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903602 SAMN31918014 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936010/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.386 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.871 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.902 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903603 SAMN31918013 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936012/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.308 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.277 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903604 SAMN31917678 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936013/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.759 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.514 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.252 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903605 SAMN31917677 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936014/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.887 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.65 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.723 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903606 SAMN31917676 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936015/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.101 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.016 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903607 SAMN31917675 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936016/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.048 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.591 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903608 SAMN31917674 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936017/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.239 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.971 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903609 SAMN31917673 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936019/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.319 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.041 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903610 SAMN31917672 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936020/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.704 lineage/clade name BQ.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903611 SAMN31917671 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936021/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.752 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.196 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.578 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903612 SAMN31917670 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936022/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.092 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.108 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903613 SAMN31917669 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936023/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.715 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.895 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903614 SAMN31917668 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936024/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.897 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903615 SAMN31917667 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936025/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.916 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.294 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.833 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903616 SAMN31918012 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936026/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.637 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.19 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.439 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903617 SAMN31917666 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936027/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.374 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.200 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903618 SAMN31917665 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936028/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903619 SAMN31918010 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936031/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903620 SAMN31918011 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936029/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903621 SAMN31918858 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936032/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903622 SAMN31918009 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936034/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903623 SAMN31917664 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936036/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903624 SAMN31918008 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936037/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903625 SAMN31918007 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936042/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903626 SAMN31918006 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936046/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903627 SAMN31917539 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936052/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903628 SAMN31918838 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937023/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.161 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.380 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903629 SAMN31917940 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937024/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.244 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.105 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903630 SAMN31917939 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937026/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.658 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.814 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.683 lineage/clade name BA.2.75.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903631 SAMN31917938 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937027/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.781 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.340 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903632 SAMN31917937 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937028/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.387 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.825 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903633 SAMN31917582 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937029/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.806 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903634 SAMN31918837 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937030/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.298 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.367 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903635 SAMN31918836 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937032/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.989 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.81 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.008 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903636 SAMN31917936 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937035/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.16 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.369 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903637 SAMN31917935 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0937036/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.852 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.404 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903638 SAMN31917517 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937039/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.586 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903639 SAMN31917475 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0937041/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.878 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.984 lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903640 SAMN31918835 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937040/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.233 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.388 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.250 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903641 SAMN31917581 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937042/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.554 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.994 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.592 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903642 SAMN31917474 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0937043/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.739 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.735 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903643 SAMN31918115 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC0937045/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.583 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.071 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.270 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903644 SAMN31917473 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0937047/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.96 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.728 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903645 SAMN31918143 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937098/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.971 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.696 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903646 SAMN31918142 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937101/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.342 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.017 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903647 SAMN31918141 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937102/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.241 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.429 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903648 SAMN31918806 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0937103/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.0 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.369 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903649 SAMN31918140 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937104/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.789 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.193 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.346 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903650 SAMN31918139 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937105/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.874 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.127 lineage/clade name CR.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903651 SAMN31918138 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937106/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.455 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.55 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.709 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903652 SAMN31918805 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0937108/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.02 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.511 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903653 SAMN31918804 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0937109/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.426 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903654 SAMN31917352 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0937110/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.913 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.717 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.529 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903655 SAMN31918262 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0937111/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.022 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.032 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903656 SAMN31918137 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937112/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903657 SAMN31918733 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0937113/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903658 SAMN31918136 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0937115/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903659 SAMN31918732 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0937116/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903660 SAMN31919246 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937258/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.662 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.291 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.146 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903661 SAMN31917811 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937264/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.837 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.181 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903662 SAMN31917810 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937266/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.248 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.313 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.583 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903663 SAMN31917809 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0937267/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.854 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.760 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903664 SAMN31919245 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937268/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.035 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.485 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903665 SAMN31919244 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937272/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.607 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.212 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.673 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903666 SAMN31919140 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937273/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.78 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.890 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903667 SAMN31919243 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937274/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.598 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.730 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903668 SAMN31919242 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937275/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.328 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.338 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.217 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903669 SAMN31917453 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0937277/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.987 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.179 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.435 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903670 SAMN31919241 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937278/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.358 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.705 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.203 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903671 SAMN31919240 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937281/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.481 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.185 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.146 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903672 SAMN31919239 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937282/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.075 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.845 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.393 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903673 SAMN31919238 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937284/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.459 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.956 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903674 SAMN31919237 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937286/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.728 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.438 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903675 SAMN31919236 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937287/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.138 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.266 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.860 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903676 SAMN31917574 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OK-CDC-LC0937288/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Oklahoma host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.639 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.420 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903677 SAMN31919139 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937293/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.344 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.233 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.859 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903678 SAMN31919138 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937295/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.49 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.986 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.953 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903679 SAMN31919137 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937296/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.353 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.236 lineage/clade name BN.1.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903680 SAMN31919136 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937298/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.2 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.697 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903681 SAMN31919135 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937299/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.825 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.838 lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903682 SAMN31919134 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937301/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.106 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.853 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903683 SAMN31918834 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0937306/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.783 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.848 lineage/clade name BQ.1.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903684 SAMN31919133 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937308/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903685 SAMN31919131 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937316/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.448 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.733 lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903686 SAMN31919132 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937309/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.2.75.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903687 SAMN31919129 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937322/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.157 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.900 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903688 SAMN31919130 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937318/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.044 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.132 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903689 SAMN31919128 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937323/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.971 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.43 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.785 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903690 SAMN31919127 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937324/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.803 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.834 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.108 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903691 SAMN31919126 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937325/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.836 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.254 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.997 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903692 SAMN31917330 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937502/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.877 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.711 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903693 SAMN31917329 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937503/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.194 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.173 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903694 SAMN31918705 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937504/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.263 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903695 SAMN31917328 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937506/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.185 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.973 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.639 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903696 SAMN31917327 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937507/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.912 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.636 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.654 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903697 SAMN31917326 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937509/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.211 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.295 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.949 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903698 SAMN31917325 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937512/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.596 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.039 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.172 lineage/clade name CP.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903699 SAMN31917324 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0937525/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.7 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.136 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.702 lineage/clade name BA.5.2.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903700 SAMN31918704 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937531/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.82 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.642 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.257 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903701 SAMN31918703 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937532/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.287 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.878 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903702 SAMN31918695 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0937535/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.119 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.541 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903703 SAMN31917322 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0937537/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.91 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.588 lineage/clade name XBD BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903704 SAMN31917321 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WV-CDC-LC0937542/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: West Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.452 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903705 SAMN31917575 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0937544/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.597 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.88 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.438 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903706 SAMN31918702 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937547/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903707 SAMN31917513 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0937553/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.989 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.812 lineage/clade name BF.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903708 SAMN31918249 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0937571/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.827 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.373 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.970 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903709 SAMN31918701 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937588/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.606 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.119 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903710 SAMN31917580 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0937590/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.158 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.618 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.571 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903711 SAMN31918694 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IN-CDC-LC0937595/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.726 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.561 lineage/clade name BA.5.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903712 SAMN31918700 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937603/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.728 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.330 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903713 SAMN31918699 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IL-CDC-LC0937604/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.145 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.914 lineage/clade name BF.32 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903714 SAMN31918725 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/HI-CDC-LC0937708/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Hawaii host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.146 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.787 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.064 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903715 SAMN31919057 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937781/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.191 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.97 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.853 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903716 SAMN31919056 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937822/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.228 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903717 SAMN31919055 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC0937826/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.815 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.237 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903718 SAMN31917348 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937869/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903719 SAMN31917349 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WA-CDC-LC0937863/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903720 SAMN31919234 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937899/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.129 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.414 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.712 lineage/clade name BA.5.2.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903721 SAMN31917918 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0937898/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.629 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.347 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903722 SAMN31919233 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937900/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.564 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.969 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903723 SAMN31919232 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0937901/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.52 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.455 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.643 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903724 SAMN31918126 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NE-CDC-LC0938026/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nebraska host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.418 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.054 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903725 SAMN31918900 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938025/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.242 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.085 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.161 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903726 SAMN31917445 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938027/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.735 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.965 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.596 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903727 SAMN31917444 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938028/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.381 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.581 lineage/clade name BF.7.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903728 SAMN31917443 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TX-CDC-LC0938029/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Texas host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.208 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.567 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.621 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903729 SAMN31917807 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938030/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.904 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.824 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.386 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903730 SAMN31918899 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938031/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.414 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.173 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.655 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903731 SAMN31918898 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938032/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.174 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.483 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.695 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903732 SAMN31918897 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938034/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.078 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.404 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.993 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903733 SAMN31918896 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938035/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.984 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.571 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903734 SAMN31918895 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938038/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.219 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.34 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.727 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903735 SAMN31918894 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CO-CDC-LC0938039/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.332 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903736 SAMN31917895 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938045/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.853 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.14 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.334 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903737 SAMN31919200 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938047/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.801 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.997 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903738 SAMN31919199 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938048/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.566 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.940 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903739 SAMN31917894 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938050/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.675 lineage/clade name BF.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903740 SAMN31917806 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938049/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.758 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.725 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903741 SAMN31917435 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938051/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.806 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.242 lineage/clade name BF.7.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903742 SAMN31919198 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938055/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.429 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.36 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.997 lineage/clade name XBB BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903743 SAMN31918248 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938056/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.499 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.947 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903744 SAMN31918721 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/IA-CDC-LC0938058/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Iowa host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.433 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.555 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.746 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903745 SAMN31918318 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/KS-CDC-LC0938061/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.234 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.827 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.010 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903746 SAMN31918246 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938063/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.91 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.086 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.466 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903747 SAMN31918247 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938062/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.134 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.432 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.597 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903748 SAMN31917893 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938066/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.812 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.532 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.072 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903749 SAMN31918245 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MO-CDC-LC0938065/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.053 lineage/clade name BA.4.6.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903750 SAMN31919197 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938067/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.687 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903751 SAMN31917434 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938068/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.487 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.458 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.980 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903752 SAMN31917892 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938070/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.922 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.239 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903753 SAMN31917891 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938071/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.425 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.613 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.820 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903754 SAMN31917890 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938072/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.132 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.546 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903755 SAMN31917889 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938074/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.719 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.266 lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903756 SAMN31919181 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938243/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.908 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903757 SAMN31917883 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938247/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.764 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.15 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.679 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903758 SAMN31917884 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938246/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.942 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.571 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903759 SAMN31917882 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938248/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.882 lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903760 SAMN31919180 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938249/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.164 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.066 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.828 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903761 SAMN31917881 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938250/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.578 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.365 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.491 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903762 SAMN31919179 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938252/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.656 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.481 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.663 lineage/clade name BF.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903763 SAMN31917880 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938253/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.515 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.438 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.945 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903764 SAMN31917879 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938254/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.351 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.691 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.521 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903765 SAMN31919178 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938255/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.599 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.613 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903766 SAMN31919177 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938256/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.672 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.512 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.915 lineage/clade name BA.5.6.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903767 SAMN31919176 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938257/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.486 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.243 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903768 SAMN31919175 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938258/2022 collected_by Laboratory Corporation of America collection_date 2022-11-11 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.99 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.57 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.341 lineage/clade name BK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903769 SAMN31917878 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938259/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.505 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.165 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903770 SAMN31917877 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938260/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 14.664 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 10.991 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.093 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903771 SAMN31917876 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938263/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.336 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.306 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.714 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903772 SAMN31919174 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938261/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.941 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.699 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.911 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903773 SAMN31917875 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938264/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.162 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.251 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903774 SAMN31917874 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938265/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.541 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.02 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.929 lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903775 SAMN31917873 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938266/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.016 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.452 lineage/clade name BA.5.2.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903776 SAMN31917872 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938267/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.331 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 13.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 43.663 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903777 SAMN31917871 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938268/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.813 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.844 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.190 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903778 SAMN31917800 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938269/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.591 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.856 lineage/clade name BN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903779 SAMN31919173 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AZ-CDC-LC0938270/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Arizona host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.396 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.124 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903780 SAMN31917870 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938275/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.165 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903781 SAMN31917430 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/UT-CDC-LC0938277/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: Utah host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.682 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.395 lineage/clade name BA.5.2.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903782 SAMN31917869 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938278/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.896 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.022 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.009 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903783 SAMN31917867 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938280/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.951 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.694 lineage/clade name BA.5.2.25 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903784 SAMN31917868 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938279/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.605 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.704 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903785 SAMN31917866 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938286/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.753 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.341 lineage/clade name BM.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903786 SAMN31917865 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NM-CDC-LC0938287/2022 collected_by Laboratory Corporation of America collection_date 2022-11-12 isolation_source Nasal Swabs geo_loc_name USA: New Mexico host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.307 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.875 lineage/clade name BQ.1.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903787 SAMN31917799 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NV-CDC-LC0938288/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.658 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903788 SAMN31918766 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935355/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.235 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.103 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903789 SAMN31917413 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935359/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903790 SAMN31918297 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935360/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903791 SAMN31918296 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935361/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903792 SAMN31918765 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935363/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903793 SAMN31917578 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC0935364/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BN.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903794 SAMN31917412 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935365/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903795 SAMN31918210 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935367/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903796 SAMN31917411 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935369/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.397 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.791 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.314 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903797 SAMN31918209 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935374/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.834 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.869 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.663 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903798 SAMN31917410 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935375/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.661 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.211 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.421 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903799 SAMN31918208 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935376/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.669 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.741 lineage/clade name BE.1.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903800 SAMN31918829 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935382/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.478 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.046 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903801 SAMN31918295 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935388/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.528 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.713 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.316 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903802 SAMN31918207 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935394/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.81 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.190 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903803 SAMN31918206 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935396/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.342 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.974 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.292 lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903804 SAMN31917409 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935401/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.337 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.078 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.406 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903805 SAMN31918731 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0935399/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.613 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.425 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.258 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903806 SAMN31917408 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935402/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.811 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.236 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.001 lineage/clade name BF.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903807 SAMN31917407 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935405/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.097 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.022 lineage/clade name BN.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903808 SAMN31918294 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935409/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.508 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.143 lineage/clade name BA.5.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903809 SAMN31918293 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935413/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.927 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.823 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.552 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903810 SAMN31918730 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0935417/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.601 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.585 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.846 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903811 SAMN31917468 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0935422/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.415 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.500 lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903812 SAMN31918764 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935429/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.038 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.147 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.543 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903813 SAMN31918828 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC0935430/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903814 SAMN31918292 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935432/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903815 SAMN31918763 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935434/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903816 SAMN31917406 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0935435/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903817 SAMN31918205 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0935439/2022 collected_by Laboratory Corporation of America collection_date 2022-11-15 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.501 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.379 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.701 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903818 SAMN31918762 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935440/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.359 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.464 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.030 lineage/clade name BN.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903819 SAMN31918761 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0935442/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.039 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.096 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903820 SAMN31917551 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935677/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.077 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.857 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903821 SAMN31918078 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935678/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.665 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.637 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.308 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903822 SAMN31918077 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935681/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.288 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.868 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.755 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903823 SAMN31918076 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935683/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.372 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.867 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.048 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903824 SAMN31918304 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC0935686/2022 collected_by Laboratory Corporation of America collection_date 2022-11-13 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.922 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.529 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903825 SAMN31918869 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935687/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.212 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.660 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903826 SAMN31918289 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0935690/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.388 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.432 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903827 SAMN31918868 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935689/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.903 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.954 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.063 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903828 SAMN31917734 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935693/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903829 SAMN31918075 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935697/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903830 SAMN31918074 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935698/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903831 SAMN31917733 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935699/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903832 SAMN31918073 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935700/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903833 SAMN31918072 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935701/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.08 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.75 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.203 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903834 SAMN31918071 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935702/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.667 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.543 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903835 SAMN31918867 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935703/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.181 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.497 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.661 lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903836 SAMN31918070 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935706/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.085 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.028 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903837 SAMN31917732 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935708/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.929 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.093 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.052 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903838 SAMN31917731 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935709/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.036 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.214 lineage/clade name CA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903839 SAMN31917730 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935711/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.571 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.796 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.044 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903840 SAMN31917729 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935712/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.206 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.600 lineage/clade name BQ.1.1.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903841 SAMN31917728 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935713/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.837 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.461 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.065 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903842 SAMN31917727 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935714/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.729 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.84 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.101 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903843 SAMN31917726 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935716/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.39 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.028 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.706 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903844 SAMN31917725 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935718/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.5 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.09 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.556 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903845 SAMN31917550 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935722/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903846 SAMN31917549 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935724/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903847 SAMN31917724 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935726/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.073 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.800 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903848 SAMN31918069 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935728/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.619 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.477 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903849 SAMN31917504 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935735/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903850 SAMN31918068 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935731/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.424 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.171 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.629 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903852 SAMN31917503 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0935736/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903853 SAMN31918031 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935946/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.71 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.753 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.598 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903854 SAMN31918030 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935947/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.905 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.232 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903851 SAMN31918032 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935945/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.332 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.22 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.153 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903855 SAMN31918028 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935951/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.279 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.671 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903856 SAMN31918029 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935950/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.025 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.751 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.172 lineage/clade name BA.2.3.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903857 SAMN31918027 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935952/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.876 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.793 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.576 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903858 SAMN31918026 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935953/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.231 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.405 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.344 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903859 SAMN31917694 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935956/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.944 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.889 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903860 SAMN31917693 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935957/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.217 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.159 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903861 SAMN31917692 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935958/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.762 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.298 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903862 SAMN31918025 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935960/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.859 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.85 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.332 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903863 SAMN31918024 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935962/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.917 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.71 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.639 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903864 SAMN31918023 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935964/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.7 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.273 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903865 SAMN31918022 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935966/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.527 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.482 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.288 lineage/clade name BA.5.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903866 SAMN31918021 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935967/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.931 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.079 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903867 SAMN31917691 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935969/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.183 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.591 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.149 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903868 SAMN31917541 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0935970/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.995 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.734 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.657 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903869 SAMN31917690 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935972/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.813 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.563 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903870 SAMN31917689 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935973/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.736 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.058 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.372 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903871 SAMN31917688 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935974/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.302 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.643 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.800 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903872 SAMN31918020 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935976/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.962 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.065 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903873 SAMN31917687 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935978/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903874 SAMN31918019 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935977/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903875 SAMN31917685 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935987/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.099 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.812 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903876 SAMN31917686 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935986/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.091 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.466 lineage/clade name CA.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903877 SAMN31917684 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935988/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.376 lineage/clade name CQ.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903878 SAMN31917683 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935989/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.277 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.99 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.030 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903879 SAMN31917682 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935990/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.685 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.339 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903880 SAMN31918018 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0935992/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.999 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.275 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903881 SAMN31918860 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0935997/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.909 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.339 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903882 SAMN31917681 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0935998/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.762 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.234 lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903883 SAMN31917680 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936001/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.668 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.156 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.933 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903884 SAMN31917993 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936168/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903885 SAMN31917631 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936170/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903886 SAMN31917992 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936171/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903887 SAMN31917531 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936175/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name CM.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903888 SAMN31917990 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936177/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903889 SAMN31917991 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936176/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903890 SAMN31917989 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936178/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903891 SAMN31917988 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936179/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903892 SAMN31917530 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936180/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.419 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.242 lineage/clade name BF.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903893 SAMN31917987 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936181/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.492 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.772 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.986 lineage/clade name BQ.1.1.18 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903894 SAMN31917529 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936184/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.624 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.884 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.999 lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903895 SAMN31917630 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936186/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.659 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.937 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.064 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903896 SAMN31917986 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936187/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.991 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.592 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.571 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903897 SAMN31917985 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936191/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.133 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.858 lineage/clade name BA.5.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903898 SAMN31917984 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936192/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.678 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.959 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.893 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903899 SAMN31917629 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936195/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.947 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.003 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903900 SAMN31917628 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936196/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.523 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.284 lineage/clade name BQ.1.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903901 SAMN31917983 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936198/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.009 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.79 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.640 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903902 SAMN31917627 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936200/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.37 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.015 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.490 lineage/clade name BQ.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903903 SAMN31917982 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936202/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.333 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.506 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.749 lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903904 SAMN31917489 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936204/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.955 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.64 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.124 lineage/clade name BA.5.2.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903905 SAMN31917981 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936206/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.924 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.431 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.989 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903906 SAMN31917980 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936207/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.067 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903907 SAMN31917626 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936211/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.603 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.038 lineage/clade name BN.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903908 SAMN31917625 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936212/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.272 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.085 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903909 SAMN31917979 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936216/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.734 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.203 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.862 lineage/clade name BA.5.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903910 SAMN31917978 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936219/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.645 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.983 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.672 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903911 SAMN31917624 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936220/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.502 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.475 lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903912 SAMN31917623 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936221/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.769 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.162 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903913 SAMN31917977 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936222/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.978 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.427 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.984 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903914 SAMN31917622 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936224/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.748 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903915 SAMN31917621 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936226/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.956 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.906 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.818 lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903916 SAMN31918726 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC0936575/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.942 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BE.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903917 SAMN31918274 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936576/2022 collected_by Laboratory Corporation of America collection_date 2022-11-14 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.9 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.199 lineage/clade name BQ.1.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903918 SAMN31917380 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936577/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.771 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.47 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.433 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903919 SAMN31917379 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936579/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.024 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.68 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.485 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903920 SAMN31918177 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936581/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.777 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.766 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.153 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903921 SAMN31918176 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936583/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903922 SAMN31918273 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936585/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903923 SAMN31918175 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936584/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903924 SAMN31917378 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936587/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903925 SAMN31917572 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OR-CDC-LC0936597/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: Oregon host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903926 SAMN31917377 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936589/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903927 SAMN31917334 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/WI-CDC-LC0936601/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903928 SAMN31917376 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936602/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903929 SAMN31918173 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936606/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903930 SAMN31918174 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936605/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903931 SAMN31917375 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936607/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903932 SAMN31918172 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936610/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.5.2.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903933 SAMN31917462 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936609/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BA.4.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903934 SAMN31918171 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936614/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903935 SAMN31917975 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936624/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903936 SAMN31918849 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC0936617/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903937 SAMN31917974 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936625/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903938 SAMN31917972 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936627/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903939 SAMN31917973 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936626/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903940 SAMN31917971 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936632/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.449 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.162 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.416 lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903941 SAMN31917970 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936633/2022 collected_by Laboratory Corporation of America collection_date 2022-11-16 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.341 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.721 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.792 lineage/clade name BA.5.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903942 SAMN31917616 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936634/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.856 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.356 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.815 lineage/clade name BQ.1.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903943 SAMN31917525 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC0936636/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BF.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903944 SAMN31917969 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC0936640/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.928 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.950 lineage/clade name BF.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903945 SAMN31917488 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC0936641/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.717 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.336 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.882 lineage/clade name BE.4.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903946 SAMN31917615 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC0936642/2022 collected_by Laboratory Corporation of America collection_date 2022-11-18 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.464 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.443 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.893 lineage/clade name XBB.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903947 SAMN31918795 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC0936643/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex male host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.872 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.434 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.426 lineage/clade name BA.5.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903948 SAMN31918164 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936843/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903949 SAMN31918163 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936844/2022 collected_by Laboratory Corporation of America collection_date 2022-11-19 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903950 SAMN31918268 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC0936853/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903951 SAMN31918749 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936845/2022 collected_by Laboratory Corporation of America collection_date 2022-11-17 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.907 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.251 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903952 SAMN31917371 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936861/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.559 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.275 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.445 lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903953 SAMN31917370 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936862/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.895 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.645 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BQ.1.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903954 SAMN31917368 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936864/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.864 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.747 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.147 lineage/clade name BQ.1.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903955 SAMN31917369 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC0936863/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.543 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.48 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.006 lineage/clade name BA.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903956 SAMN31918162 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936869/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 99 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.494 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name BA.5.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903957 SAMN31918748 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC0936866/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.063 lineage/clade name BF.7.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903958 SAMN31918161 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936870/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.933 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.41 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.924 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903959 SAMN31918160 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936871/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.179 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.903 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.324 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903960 SAMN31918159 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936873/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.516 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.169 lineage/clade name CK.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903961 SAMN31917461 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC0936874/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.832 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.272 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903962 SAMN31918158 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936875/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.53 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.345 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.646 lineage/clade name BQ.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS15903963 SAMN31918157 CDC Sars CoV2 Sequencing Baseline Constellation 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC0936877/2022 collected_by Laboratory Corporation of America collection_date 2022-11-20 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.189 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.537 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.028 lineage/clade name BQ.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated