<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX18421357" alias="Zeugodacus_cucurbitae_PacBio_CSS_low_hand">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18421357</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12318352">Zeugodacus_cucurbitae_PacBio_CSS_low_hand</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>PacBio HiFi whole genome sequencing of: Adult Zeugodacus cucurbitae (ToLID: idZeuCucr1)</TITLE>
    <STUDY_REF accession="SRP410507">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410507</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12318352">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>High molecular weight (HMW) DNA extraction was performed from a whole male adult using the Qiagen MagAttract HMW DNA Kit. DNA shearing was performed using the Diagenode Megaruptor 3 with the Speed 31 protocol. The sheared DNA was prepared for PacBio sequencing using the SMRTBell Express Template kit 3.0 and the library was size-selected with beads to remove library molecules less than 3kb in length to generate the final library for sequencing. Sequencing was performed on a Sequel II System using Binding Kit v3.2, and SMRT Cell 8M. To target HiFi reads, the library was sequenced using a 30 hour movie time on one SMRTcell. Raw subreads were converted to HiFi data by processing with CCS to call a single high quality consensus sequence for each molecule using a 99.5% consensus accuracy cutoff.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15904294">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15904294</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|ars-pwa-hilo-genomics@usda.gov">idZeuCucr1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Zeugodacus_cucurbitae_PacBio_CSS_low_hand</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>Sequel II</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX18421358" alias="Zeugodacus_cucurbitae_PacBio_CSS_low_miro">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX18421358</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB12318352">Zeugodacus_cucurbitae_PacBio_CSS_low_miro</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>PacBio HiFi whole genome sequencing of: Adult Zeugodacus cucurbitae (ToLID: idZeuCucr1)</TITLE>
    <STUDY_REF accession="SRP410507">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP410507</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB12318352">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>High molecular weight (HMW) DNA extraction was performed from a whole male adult using the Qiagen MagAttract HMW DNA Kit. DNA shearing was performed using the Diagenode Megaruptor 3 with the Speed 31 protocol. The sheared DNA was prepared for PacBio sequencing using the SMRTBell Express Template kit 3.0 using the Miroculus Miro Canvas and the library was size-selected with beads to remove library molecules less than 3kb in length to generate the final library for sequencing. Sequencing was performed on a Sequel II System using Binding Kit v3.2, and SMRT Cell 8M. To target HiFi reads, the library was sequenced using a 30 hour movie time on one SMRTcell. Raw subreads were converted to HiFi data by processing with CCS to call a single high quality consensus sequence for each molecule using a 99.5% consensus accuracy cutoff.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS15904294">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS15904294</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|ars-pwa-hilo-genomics@usda.gov">idZeuCucr1</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Zeugodacus_cucurbitae_PacBio_CSS_low_miro</LIBRARY_NAME>
        <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>Sequel II</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
