SRS15973623 SAMN32051368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-26 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 2/Human/USA/SD-SDPHL-2229/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2229/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973625 SAMN32051369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-27 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 3/Human/USA/SD-SDPHL-2230/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2230/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973626 SAMN32051378 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-28 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 13/Human/USA/SD-SDPHL-2240/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2240/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973627 SAMN32051379 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-09-19 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 14/Human/USA/SD-SDPHL-2241/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2241/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973628 SAMN32051380 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-28 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 15/Human/USA/SD-SDPHL-2242/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2242/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973629 SAMN32051381 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-01 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 16/Human/USA/SD-SDPHL-2243/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2243/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973630 SAMN32051382 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-02 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 18/Human/USA/SD-SDPHL-2245/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2245/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973631 SAMN32051383 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-01 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 19/Human/USA/SD-SDPHL-2246/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2246/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973632 SAMN32051384 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-01 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 20/Human/USA/SD-SDPHL-2247/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2247/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973633 SAMN32051385 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-01 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 21/Human/USA/SD-SDPHL-2248/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2248/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973634 SAMN32051386 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-02 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 22/Human/USA/SD-SDPHL-2249/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2249/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973635 SAMN32051387 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-03 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 23/Human/USA/SD-SDPHL-2250/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2250/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973636 SAMN32051370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-29 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 4/Human/USA/SD-SDPHL-2231/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2231/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973637 SAMN32051388 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-03 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 24/Human/USA/SD-SDPHL-2251/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2251/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973638 SAMN32051389 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-03 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 25/Human/USA/SD-SDPHL-2252/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2252/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973639 SAMN32051390 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-04 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 26/Human/USA/SD-SDPHL-2253/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2253/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973640 SAMN32051391 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-02 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 27/Human/USA/SD-SDPHL-2254/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2254/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973641 SAMN32051392 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-02 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 29/Human/USA/SD-SDPHL-2256/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2256/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973642 SAMN32051393 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-03 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 30/Human/USA/SD-SDPHL-2257/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2257/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973643 SAMN32051394 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-04 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 31/Human/USA/SD-SDPHL-2258/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2258/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973644 SAMN32051395 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-05 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 33/Human/USA/SD-SDPHL-2260/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2260/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973645 SAMN32051396 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-08 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 34/Human/USA/SD-SDPHL-2261/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2261/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973646 SAMN32051397 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 35/Human/USA/SD-SDPHL-2262/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2262/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973647 SAMN32051371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-30 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 5/Human/USA/SD-SDPHL-2232/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2232/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973648 SAMN32051398 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 36/Human/USA/SD-SDPHL-2263/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2263/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973649 SAMN32051399 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-05 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 37/Human/USA/SD-SDPHL-2264/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2264/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973650 SAMN32051400 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 38/Human/USA/SD-SDPHL-2265/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2265/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973651 SAMN32051401 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 39/Human/USA/SD-SDPHL-2266/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2266/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973652 SAMN32051402 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-06 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 40/Human/USA/SD-SDPHL-2267/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2267/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973653 SAMN32051403 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-09 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 41/Human/USA/SD-SDPHL-2268/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2268/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973654 SAMN32051404 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 42/Human/USA/SD-SDPHL-2269/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2269/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973655 SAMN32051405 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-08 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 43/Human/USA/SD-SDPHL-2270/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2270/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973656 SAMN32051406 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 44/Human/USA/SD-SDPHL-2271/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2271/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973657 SAMN32051407 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-07 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 45/Human/USA/SD-SDPHL-2272/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2272/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973658 SAMN32051408 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-08 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 46/Human/USA/SD-SDPHL-2273/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2273/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973659 SAMN32051372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-30 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 6/Human/USA/SD-SDPHL-2233/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2233/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973660 SAMN32051409 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-09 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 47/Human/USA/SD-SDPHL-2274/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2274/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973661 SAMN32051410 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-09 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 48/Human/USA/SD-SDPHL-2275/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2275/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973662 SAMN32051411 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-09 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 49/Human/USA/SD-SDPHL-2276/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2276/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973663 SAMN32051412 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-10 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 50/Human/USA/SD-SDPHL-2277/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2277/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973664 SAMN32051413 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-09 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 51/Human/USA/SD-SDPHL-2278/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2278/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973665 SAMN32051414 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-10 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 52/Human/USA/SD-SDPHL-2279/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2279/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973666 SAMN32051415 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-11 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 53/Human/USA/SD-SDPHL-2280/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2280/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973667 SAMN32051416 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-11 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 54/Human/USA/SD-SDPHL-2281/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2281/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973668 SAMN32051417 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-11 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 55/Human/USA/SD-SDPHL-2282/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2282/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973669 SAMN32051373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-30 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 7/Human/USA/SD-SDPHL-2234/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2234/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973670 SAMN32051418 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-11 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 56/Human/USA/SD-SDPHL-2283/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2283/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973671 SAMN32051419 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-14 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 57/Human/USA/SD-SDPHL-2284/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2284/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973672 SAMN32051420 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-14 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 58/Human/USA/SD-SDPHL-2285/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2285/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973673 SAMN32051421 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 67/Human/USA/SD-SDPHL-2294/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2294/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973674 SAMN32051422 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 68/Human/USA/SD-SDPHL-2295/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2295/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973675 SAMN32051423 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-15 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 69/Human/USA/SD-SDPHL-2296/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2296/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973676 SAMN32051424 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 70/Human/USA/SD-SDPHL-2297/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2297/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973677 SAMN32051425 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 71/Human/USA/SD-SDPHL-2298/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2298/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973678 SAMN32051426 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 72/Human/USA/SD-SDPHL-2299/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2299/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973679 SAMN32051427 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 73/Human/USA/SD-SDPHL-2300/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2300/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973680 SAMN32051374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-31 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 8/Human/USA/SD-SDPHL-2235/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2235/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973681 SAMN32051428 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-16 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 74/Human/USA/SD-SDPHL-2301/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2301/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973682 SAMN32051430 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-17 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 76/Human/USA/SD-SDPHL-2303/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2303/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973683 SAMN32051429 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-17 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 75/Human/USA/SD-SDPHL-2302/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2302/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973684 SAMN32051431 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-17 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 77/Human/USA/SD-SDPHL-2304/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2304/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973685 SAMN32051432 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-11-17 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 78/Human/USA/SD-SDPHL-2305/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2305/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973686 SAMN32051375 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-29 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 9/Human/USA/SD-SDPHL-2236/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2236/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973687 SAMN32051376 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-27 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 11/Human/USA/SD-SDPHL-2238/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2238/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated SRS15973688 SAMN32051377 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 707536 PRJNA707536 collected_by South Dakota Public Health Laboratory collection_date 2022-10-27 geo_loc_name USA: South Dakota host Homo sapiens host_disease COVID-19 isolate Severe acute respiratory syndrome coronavirus 12/Human/USA/SD-SDPHL-2239/2022 isolation_source clinical gisaid_virus_name hCoV-19/USA/SD-SDPHL-2239/2022 purpose_of_sampling clinical diagnostics purpose_of_sequencing Baseline Surveillance BioSampleModel SARS-CoV-2: clinical or host-associated