SRX18518308 CORVASEQ-CLT-004951_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987344 CORVASEQ-CLT-004951_BioSample CORVASEQ-CLT-004951 AMPLICON VIRAL RNA PCR PromethION SRX18518309 CORVASEQ-CLT-004952_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987345 CORVASEQ-CLT-004952_BioSample CORVASEQ-CLT-004952 AMPLICON VIRAL RNA PCR PromethION SRX18518310 CORVASEQ-CLT-004953_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987346 CORVASEQ-CLT-004953_BioSample CORVASEQ-CLT-004953 AMPLICON VIRAL RNA PCR PromethION SRX18518311 CORVASEQ-CLT-004954_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987347 CORVASEQ-CLT-004954_BioSample CORVASEQ-CLT-004954 AMPLICON VIRAL RNA PCR PromethION SRX18518312 CORVASEQ-CLT-004955_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987348 CORVASEQ-CLT-004955_BioSample CORVASEQ-CLT-004955 AMPLICON VIRAL RNA PCR PromethION SRX18518313 CORVASEQ-CLT-004956_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987349 CORVASEQ-CLT-004956_BioSample CORVASEQ-CLT-004956 AMPLICON VIRAL RNA PCR PromethION SRX18518314 CORVASEQ-CLT-004957_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987350 CORVASEQ-CLT-004957_BioSample CORVASEQ-CLT-004957 AMPLICON VIRAL RNA PCR PromethION SRX18518315 CORVASEQ-CLT-004958_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987351 CORVASEQ-CLT-004958_BioSample CORVASEQ-CLT-004958 AMPLICON VIRAL RNA PCR PromethION SRX18518316 CORVASEQ-CLT-004959_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987352 CORVASEQ-CLT-004959_BioSample CORVASEQ-CLT-004959 AMPLICON VIRAL RNA PCR PromethION SRX18518317 CORVASEQ-CLT-004960_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987353 CORVASEQ-CLT-004960_BioSample CORVASEQ-CLT-004960 AMPLICON VIRAL RNA PCR PromethION SRX18518318 CORVASEQ-CLT-004961_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987354 CORVASEQ-CLT-004961_BioSample CORVASEQ-CLT-004961 AMPLICON VIRAL RNA PCR PromethION SRX18518319 CORVASEQ-CLT-004962_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987355 CORVASEQ-CLT-004962_BioSample CORVASEQ-CLT-004962 AMPLICON VIRAL RNA PCR PromethION SRX18518320 CORVASEQ-CLT-004963_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987356 CORVASEQ-CLT-004963_BioSample CORVASEQ-CLT-004963 AMPLICON VIRAL RNA PCR PromethION SRX18518321 CORVASEQ-CLT-004964_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987357 CORVASEQ-CLT-004964_BioSample CORVASEQ-CLT-004964 AMPLICON VIRAL RNA PCR PromethION SRX18518322 CORVASEQ-CLT-004965_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987358 CORVASEQ-CLT-004965_BioSample CORVASEQ-CLT-004965 AMPLICON VIRAL RNA PCR PromethION SRX18518323 CORVASEQ-CLT-004966_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987359 CORVASEQ-CLT-004966_BioSample CORVASEQ-CLT-004966 AMPLICON VIRAL RNA PCR PromethION SRX18518324 CORVASEQ-CLT-004967_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987360 CORVASEQ-CLT-004967_BioSample CORVASEQ-CLT-004967 AMPLICON VIRAL RNA PCR PromethION SRX18518325 CORVASEQ-CLT-004968_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987361 CORVASEQ-CLT-004968_BioSample CORVASEQ-CLT-004968 AMPLICON VIRAL RNA PCR PromethION SRX18518326 CORVASEQ-CLT-004969_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987362 CORVASEQ-CLT-004969_BioSample CORVASEQ-CLT-004969 AMPLICON VIRAL RNA PCR PromethION SRX18518327 CORVASEQ-CLT-004970_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987363 CORVASEQ-CLT-004970_BioSample CORVASEQ-CLT-004970 AMPLICON VIRAL RNA PCR PromethION SRX18518328 CORVASEQ-CLT-004971_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987364 CORVASEQ-CLT-004971_BioSample CORVASEQ-CLT-004971 AMPLICON VIRAL RNA PCR PromethION SRX18518329 CORVASEQ-CLT-004972_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987365 CORVASEQ-CLT-004972_BioSample CORVASEQ-CLT-004972 AMPLICON VIRAL RNA PCR PromethION SRX18518330 CORVASEQ-CLT-004973_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987366 CORVASEQ-CLT-004973_BioSample CORVASEQ-CLT-004973 AMPLICON VIRAL RNA PCR PromethION SRX18518331 CORVASEQ-CLT-004974_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987367 CORVASEQ-CLT-004974_BioSample CORVASEQ-CLT-004974 AMPLICON VIRAL RNA PCR PromethION SRX18518332 CORVASEQ-CLT-004975_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987368 CORVASEQ-CLT-004975_BioSample CORVASEQ-CLT-004975 AMPLICON VIRAL RNA PCR PromethION SRX18518333 CORVASEQ-CLT-004976_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987369 CORVASEQ-CLT-004976_BioSample CORVASEQ-CLT-004976 AMPLICON VIRAL RNA PCR PromethION SRX18518334 CORVASEQ-CLT-004977_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987370 CORVASEQ-CLT-004977_BioSample CORVASEQ-CLT-004977 AMPLICON VIRAL RNA PCR PromethION SRX18518335 CORVASEQ-CLT-004978_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987371 CORVASEQ-CLT-004978_BioSample CORVASEQ-CLT-004978 AMPLICON VIRAL RNA PCR PromethION SRX18518336 CORVASEQ-CLT-004979_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987372 CORVASEQ-CLT-004979_BioSample CORVASEQ-CLT-004979 AMPLICON VIRAL RNA PCR PromethION SRX18518337 CORVASEQ-CLT-004980_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987373 CORVASEQ-CLT-004980_BioSample CORVASEQ-CLT-004980 AMPLICON VIRAL RNA PCR PromethION SRX18518338 CORVASEQ-CLT-004981_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987374 CORVASEQ-CLT-004981_BioSample CORVASEQ-CLT-004981 AMPLICON VIRAL RNA PCR PromethION SRX18518339 CORVASEQ-CLT-004982_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987375 CORVASEQ-CLT-004982_BioSample CORVASEQ-CLT-004982 AMPLICON VIRAL RNA PCR PromethION SRX18518340 CORVASEQ-CLT-004983_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987376 CORVASEQ-CLT-004983_BioSample CORVASEQ-CLT-004983 AMPLICON VIRAL RNA PCR PromethION SRX18518341 CORVASEQ-CLT-004984_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987377 CORVASEQ-CLT-004984_BioSample CORVASEQ-CLT-004984 AMPLICON VIRAL RNA PCR PromethION SRX18518342 CORVASEQ-CLT-004986_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987378 CORVASEQ-CLT-004986_BioSample CORVASEQ-CLT-004986 AMPLICON VIRAL RNA PCR PromethION SRX18518343 CORVASEQ-CLT-004987_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987379 CORVASEQ-CLT-004987_BioSample CORVASEQ-CLT-004987 AMPLICON VIRAL RNA PCR PromethION SRX18518344 CORVASEQ-CLT-004988_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987380 CORVASEQ-CLT-004988_BioSample CORVASEQ-CLT-004988 AMPLICON VIRAL RNA PCR PromethION SRX18518345 CORVASEQ-CLT-004989_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987381 CORVASEQ-CLT-004989_BioSample CORVASEQ-CLT-004989 AMPLICON VIRAL RNA PCR PromethION SRX18518346 CORVASEQ-CLT-004990_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987382 CORVASEQ-CLT-004990_BioSample CORVASEQ-CLT-004990 AMPLICON VIRAL RNA PCR PromethION SRX18518347 CORVASEQ-CLT-004991_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987383 CORVASEQ-CLT-004991_BioSample CORVASEQ-CLT-004991 AMPLICON VIRAL RNA PCR PromethION SRX18518348 CORVASEQ-CLT-005012_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987384 CORVASEQ-CLT-005012_BioSample CORVASEQ-CLT-005012 AMPLICON VIRAL RNA PCR PromethION SRX18518349 CORVASEQ-CLT-005013_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987385 CORVASEQ-CLT-005013_BioSample CORVASEQ-CLT-005013 AMPLICON VIRAL RNA PCR PromethION SRX18518350 CORVASEQ-CLT-005014_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987386 CORVASEQ-CLT-005014_BioSample CORVASEQ-CLT-005014 AMPLICON VIRAL RNA PCR PromethION SRX18518351 CORVASEQ-CLT-005015_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987387 CORVASEQ-CLT-005015_BioSample CORVASEQ-CLT-005015 AMPLICON VIRAL RNA PCR PromethION SRX18518352 CORVASEQ-CLT-005016_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987388 CORVASEQ-CLT-005016_BioSample CORVASEQ-CLT-005016 AMPLICON VIRAL RNA PCR PromethION SRX18518353 CORVASEQ-CLT-005017_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987389 CORVASEQ-CLT-005017_BioSample CORVASEQ-CLT-005017 AMPLICON VIRAL RNA PCR PromethION SRX18518354 CORVASEQ-CLT-005018_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987390 CORVASEQ-CLT-005018_BioSample CORVASEQ-CLT-005018 AMPLICON VIRAL RNA PCR PromethION SRX18518355 CORVASEQ-CLT-005019_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987391 CORVASEQ-CLT-005019_BioSample CORVASEQ-CLT-005019 AMPLICON VIRAL RNA PCR PromethION SRX18518356 CORVASEQ-CLT-005020_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987392 CORVASEQ-CLT-005020_BioSample CORVASEQ-CLT-005020 AMPLICON VIRAL RNA PCR PromethION SRX18518357 CORVASEQ-CLT-005021_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987393 CORVASEQ-CLT-005021_BioSample CORVASEQ-CLT-005021 AMPLICON VIRAL RNA PCR PromethION SRX18518358 CORVASEQ-CLT-005023_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987394 CORVASEQ-CLT-005023_BioSample CORVASEQ-CLT-005023 AMPLICON VIRAL RNA PCR PromethION SRX18518359 CORVASEQ-CLT-005024_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987395 CORVASEQ-CLT-005024_BioSample CORVASEQ-CLT-005024 AMPLICON VIRAL RNA PCR PromethION SRX18518360 CORVASEQ-CLT-005025_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987396 CORVASEQ-CLT-005025_BioSample CORVASEQ-CLT-005025 AMPLICON VIRAL RNA PCR PromethION SRX18518361 CORVASEQ-CLT-005026_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987397 CORVASEQ-CLT-005026_BioSample CORVASEQ-CLT-005026 AMPLICON VIRAL RNA PCR PromethION SRX18518362 CORVASEQ-CLT-005027_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987398 CORVASEQ-CLT-005027_BioSample CORVASEQ-CLT-005027 AMPLICON VIRAL RNA PCR PromethION SRX18518363 CORVASEQ-CLT-005028_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987399 CORVASEQ-CLT-005028_BioSample CORVASEQ-CLT-005028 AMPLICON VIRAL RNA PCR PromethION SRX18518364 CORVASEQ-CLT-005029_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987400 CORVASEQ-CLT-005029_BioSample CORVASEQ-CLT-005029 AMPLICON VIRAL RNA PCR PromethION SRX18518365 CORVASEQ-CLT-005030_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987401 CORVASEQ-CLT-005030_BioSample CORVASEQ-CLT-005030 AMPLICON VIRAL RNA PCR PromethION SRX18518366 CORVASEQ-CLT-005031_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987402 CORVASEQ-CLT-005031_BioSample CORVASEQ-CLT-005031 AMPLICON VIRAL RNA PCR PromethION SRX18518367 CORVASEQ-CLT-005032_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987403 CORVASEQ-CLT-005032_BioSample CORVASEQ-CLT-005032 AMPLICON VIRAL RNA PCR PromethION SRX18518368 CORVASEQ-CLT-005033_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987404 CORVASEQ-CLT-005033_BioSample CORVASEQ-CLT-005033 AMPLICON VIRAL RNA PCR PromethION SRX18518369 CORVASEQ-CLT-005034_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987405 CORVASEQ-CLT-005034_BioSample CORVASEQ-CLT-005034 AMPLICON VIRAL RNA PCR PromethION SRX18518370 CORVASEQ-CLT-005035_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987406 CORVASEQ-CLT-005035_BioSample CORVASEQ-CLT-005035 AMPLICON VIRAL RNA PCR PromethION SRX18518371 CORVASEQ-CLT-005037_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987407 CORVASEQ-CLT-005037_BioSample CORVASEQ-CLT-005037 AMPLICON VIRAL RNA PCR PromethION SRX18518372 CORVASEQ-CLT-005038_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987408 CORVASEQ-CLT-005038_BioSample CORVASEQ-CLT-005038 AMPLICON VIRAL RNA PCR PromethION SRX18518373 CORVASEQ-CLT-005039_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987409 CORVASEQ-CLT-005039_BioSample CORVASEQ-CLT-005039 AMPLICON VIRAL RNA PCR PromethION SRX18518374 CORVASEQ-CLT-005040_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987410 CORVASEQ-CLT-005040_BioSample CORVASEQ-CLT-005040 AMPLICON VIRAL RNA PCR PromethION SRX18518375 CORVASEQ-CLT-005041_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987411 CORVASEQ-CLT-005041_BioSample CORVASEQ-CLT-005041 AMPLICON VIRAL RNA PCR PromethION SRX18518376 CORVASEQ-CLT-005042_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987412 CORVASEQ-CLT-005042_BioSample CORVASEQ-CLT-005042 AMPLICON VIRAL RNA PCR PromethION SRX18518377 CORVASEQ-CLT-005043_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987413 CORVASEQ-CLT-005043_BioSample CORVASEQ-CLT-005043 AMPLICON VIRAL RNA PCR PromethION SRX18518378 CORVASEQ-CLT-004992_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987414 CORVASEQ-CLT-004992_BioSample CORVASEQ-CLT-004992 AMPLICON VIRAL RNA PCR PromethION SRX18518379 CORVASEQ-CLT-004993_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987415 CORVASEQ-CLT-004993_BioSample CORVASEQ-CLT-004993 AMPLICON VIRAL RNA PCR PromethION SRX18518380 CORVASEQ-CLT-004994_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987416 CORVASEQ-CLT-004994_BioSample CORVASEQ-CLT-004994 AMPLICON VIRAL RNA PCR PromethION SRX18518381 CORVASEQ-CLT-004995_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987417 CORVASEQ-CLT-004995_BioSample CORVASEQ-CLT-004995 AMPLICON VIRAL RNA PCR PromethION SRX18518382 CORVASEQ-CLT-004996_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987418 CORVASEQ-CLT-004996_BioSample CORVASEQ-CLT-004996 AMPLICON VIRAL RNA PCR PromethION SRX18518383 CORVASEQ-CLT-004997_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987419 CORVASEQ-CLT-004997_BioSample CORVASEQ-CLT-004997 AMPLICON VIRAL RNA PCR PromethION SRX18518384 CORVASEQ-CLT-004998_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987420 CORVASEQ-CLT-004998_BioSample CORVASEQ-CLT-004998 AMPLICON VIRAL RNA PCR PromethION SRX18518385 CORVASEQ-CLT-004999_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987421 CORVASEQ-CLT-004999_BioSample CORVASEQ-CLT-004999 AMPLICON VIRAL RNA PCR PromethION SRX18518386 CORVASEQ-CLT-005000_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987422 CORVASEQ-CLT-005000_BioSample CORVASEQ-CLT-005000 AMPLICON VIRAL RNA PCR PromethION SRX18518387 CORVASEQ-CLT-005001_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987423 CORVASEQ-CLT-005001_BioSample CORVASEQ-CLT-005001 AMPLICON VIRAL RNA PCR PromethION SRX18518388 CORVASEQ-CLT-005002_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987424 CORVASEQ-CLT-005002_BioSample CORVASEQ-CLT-005002 AMPLICON VIRAL RNA PCR PromethION SRX18518389 CORVASEQ-CLT-005003_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987425 CORVASEQ-CLT-005003_BioSample CORVASEQ-CLT-005003 AMPLICON VIRAL RNA PCR PromethION SRX18518390 CORVASEQ-CLT-005004_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987426 CORVASEQ-CLT-005004_BioSample CORVASEQ-CLT-005004 AMPLICON VIRAL RNA PCR PromethION SRX18518391 CORVASEQ-CLT-005005_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987427 CORVASEQ-CLT-005005_BioSample CORVASEQ-CLT-005005 AMPLICON VIRAL RNA PCR PromethION SRX18518392 CORVASEQ-CLT-005006_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987428 CORVASEQ-CLT-005006_BioSample CORVASEQ-CLT-005006 AMPLICON VIRAL RNA PCR PromethION SRX18518393 CORVASEQ-CLT-005007_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987429 CORVASEQ-CLT-005007_BioSample CORVASEQ-CLT-005007 AMPLICON VIRAL RNA PCR PromethION SRX18518394 CORVASEQ-CLT-005008_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987430 CORVASEQ-CLT-005008_BioSample CORVASEQ-CLT-005008 AMPLICON VIRAL RNA PCR PromethION SRX18518395 CORVASEQ-CLT-005009_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987431 CORVASEQ-CLT-005009_BioSample CORVASEQ-CLT-005009 AMPLICON VIRAL RNA PCR PromethION SRX18518396 CORVASEQ-CLT-005010_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987432 CORVASEQ-CLT-005010_BioSample CORVASEQ-CLT-005010 AMPLICON VIRAL RNA PCR PromethION SRX18518397 CORVASEQ-CLT-005011_SRA SRP378240 PRJNA720702 Viral sequencing was performed following a tiling amplicon strategy using the vss1a primer scheme. Sequencing was performed using a PromethIon by Oxford Nanopore Technologies . Libraries were prepared using NEBNext® ARTIC SARS-CoV-2 Companion Kit SRS15987433 CORVASEQ-CLT-005011_BioSample CORVASEQ-CLT-005011 AMPLICON VIRAL RNA PCR PromethION