SRS15992896 SAMN30465856 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by D'Almeida Clinic wc DAL collection_date 2022-06-24 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL17/2022 isolation_source missing gisaid_accession EPI_ISL_14262358 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL17/2022 host_age 63 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992897 SAMN30465857 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-20 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O950/2022 isolation_source missing gisaid_accession EPI_ISL_14262323 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O950/2022 host_age 24 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992898 SAMN30465874 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-23 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK97/2022 isolation_source missing gisaid_accession EPI_ISL_14262345 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK97/2022 host_age 62 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992899 SAMN30465876 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-22 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK95/2022 isolation_source missing gisaid_accession EPI_ISL_14262344 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK95/2022 host_age 39 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992900 SAMN30465878 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-10 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA95/2022 isolation_source missing gisaid_accession EPI_ISL_14262377 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA95/2022 host_age 29 host_sex male purpose_of_sequencing Surveillance/Vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992901 SAMN30465879 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-29 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA75/2022 isolation_source missing gisaid_accession EPI_ISL_14262367 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA75/2022 host_age 90 host_sex male purpose_of_sequencing Surveillance/Pfizer vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992902 SAMN30465882 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Springbok PHC Clinic collection_date 2022-06-28 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O971/2022 isolation_source missing gisaid_accession EPI_ISL_14262332 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O971/2022 host_age 28 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992903 SAMN30465886 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by 2 Military Hospital wc MAA collection_date 2022-06-22 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL08/2022 isolation_source missing gisaid_accession EPI_ISL_14262380 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL08/2022 host_age 63 host_sex unknown purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992904 SAMN30465888 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Forensic Medicine - UCT collection_date 2022-06-20 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL01/2022 isolation_source missing gisaid_accession EPI_ISL_14262348 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL01/2022 host_age unknown host_sex unknown purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992905 SAMN30465890 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Gansbaai Clinic wc GBP collection_date 2022-06-29 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O976/2022 isolation_source missing gisaid_accession EPI_ISL_14262335 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O976/2022 host_age 63 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992906 SAMN30465891 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-07-13 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL24/2022 isolation_source missing gisaid_accession EPI_ISL_14262361 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL24/2022 host_age 92 host_sex male purpose_of_sequencing Surveillance/Novel FIND POC sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992907 SAMN30465892 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-27 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O973/2022 isolation_source missing gisaid_accession EPI_ISL_14262333 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O973/2022 host_age 32 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992908 SAMN30465858 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-13 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA91/2022 isolation_source missing gisaid_accession EPI_ISL_14262373 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA91/2022 host_age 67 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992909 SAMN30465894 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-20 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK99/2022 isolation_source missing gisaid_accession EPI_ISL_14262347 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK99/2022 host_age 38 host_sex female purpose_of_sequencing Surveillance/Novel FIND POC sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992910 SAMN30465895 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-11 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA92/2022 isolation_source missing gisaid_accession EPI_ISL_14262374 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA92/2022 host_age 38 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992911 SAMN30465899 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-06 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA89/2022 isolation_source missing gisaid_accession EPI_ISL_14262371 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA89/2022 host_age 29 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992912 SAMN30465900 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by 2 Military Hospital wc MAA collection_date 2022-06-17 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL04/2022 isolation_source missing gisaid_accession EPI_ISL_14262349 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL04/2022 host_age 77 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992913 SAMN30465903 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2022-07-12 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL27/2022 isolation_source missing gisaid_accession EPI_ISL_14262362 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL27/2022 host_age 39 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992914 SAMN30465905 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2022-07-15 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL31/2022 isolation_source missing gisaid_accession EPI_ISL_14262365 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL31/2022 host_age 40 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992915 SAMN30465908 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL15/2022 isolation_source missing gisaid_accession EPI_ISL_14262356 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL15/2022 host_age 60 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992916 SAMN30465909 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Great Brak River Clinic wc GBC collection_date 2022-06-20 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL06/2022 isolation_source missing gisaid_accession EPI_ISL_14262350 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL06/2022 host_age 51 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992917 SAMN30465911 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA76/2022 isolation_source missing gisaid_accession EPI_ISL_14262368 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA76/2022 host_age 52 host_sex female purpose_of_sequencing Surveillance/Pfizer vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992918 SAMN30465912 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-27 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA73/2022 isolation_source missing gisaid_accession EPI_ISL_14279405 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA73/2022 host_age 67 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992919 SAMN30465859 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Oudtshoorn Sick Bay (SANDF) collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O975/2022 isolation_source missing gisaid_accession EPI_ISL_14262379 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O975/2022 host_age 29 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992920 SAMN30465913 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-29 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA77/2022 isolation_source missing gisaid_accession EPI_ISL_14262369 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA77/2022 host_age 19 host_sex female purpose_of_sequencing Surveillance/Vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992921 SAMN30465917 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Citrusdal Hospital wc CIT collection_date 2022-07-08 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O983/2022 isolation_source missing gisaid_accession EPI_ISL_14262340 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O983/2022 host_age 82 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992922 SAMN30465918 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-25 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O979/2022 isolation_source missing gisaid_accession EPI_ISL_14262338 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O979/2022 host_age 32 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992923 SAMN30465920 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-07-15 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL30/2022 isolation_source missing gisaid_accession EPI_ISL_14262364 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL30/2022 host_age 55 host_sex male purpose_of_sequencing Surveillance/Novel FIND POC sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992924 SAMN30465922 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by 2 Military Hospital wc MAA collection_date 2022-06-19 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK98/2022 isolation_source missing gisaid_accession EPI_ISL_14262346 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK98/2022 host_age 77 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992925 SAMN30465924 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-22 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O958/2022 isolation_source missing gisaid_accession EPI_ISL_14262326 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O958/2022 host_age 42 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992926 SAMN30465923 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL16/2022 isolation_source missing gisaid_accession EPI_ISL_14262357 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL16/2022 host_age 76 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992927 SAMN30465926 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Springbok PHC Clinic collection_date 2022-06-20 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O965/2022 isolation_source missing gisaid_accession EPI_ISL_14262330 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O965/2022 host_age 57 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992928 SAMN30465925 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by SAS Saldanha collection_date 2022-07-12 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O980/2022 isolation_source missing gisaid_accession EPI_ISL_14262339 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O980/2022 host_age 71 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992929 SAMN30465929 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by SAS Saldanha collection_date 2022-06-22 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O960/2022 isolation_source missing gisaid_accession EPI_ISL_14262327 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O960/2022 host_age 36 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992930 SAMN30465860 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Montagu Clinic wc MGH collection_date 2022-06-21 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O955/2022 isolation_source missing gisaid_accession EPI_ISL_14262325 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O955/2022 host_age 51 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992931 SAMN30465930 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-22 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O961/2022 isolation_source missing gisaid_accession EPI_ISL_14262328 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O961/2022 host_age 53 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992932 SAMN30465934 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Plettenberg Bay Clinic wc PLC collection_date 2022-06-22 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL10/2022 isolation_source missing gisaid_accession EPI_ISL_14262353 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL10/2022 host_age 73 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992933 SAMN30465938 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-19 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK94/2022 isolation_source missing gisaid_accession EPI_ISL_14262343 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK94/2022 host_age 58 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992934 SAMN30465939 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-12 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA94/2022 isolation_source missing gisaid_accession EPI_ISL_14262376 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA94/2022 host_age 43 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992935 SAMN30465940 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-22 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL07/2022 isolation_source missing gisaid_accession EPI_ISL_14262351 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL07/2022 host_age 39 host_sex male purpose_of_sequencing Surveillance/Novel FIND POC sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992936 SAMN30465943 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Robertson Hospital wc ROB collection_date 2022-06-21 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O969/2022 isolation_source missing gisaid_accession EPI_ISL_14262331 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O969/2022 host_age 40 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992937 SAMN30465944 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by SAS Saldanha collection_date 2022-07-08 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O985/2022 isolation_source missing gisaid_accession EPI_ISL_14262341 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O985/2022 host_age 43 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992938 SAMN30465947 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Langebaan Clinic wc LBC collection_date 2022-06-20 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O951/2022 isolation_source missing gisaid_accession EPI_ISL_14262324 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O951/2022 host_age 71 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992939 SAMN30465948 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL18/2022 isolation_source missing gisaid_accession EPI_ISL_14262359 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL18/2022 host_age 37 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992940 SAMN30465950 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA74/2022 isolation_source missing gisaid_accession EPI_ISL_14262366 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA74/2022 host_age 42 host_sex female purpose_of_sequencing Surveillance/Pfizer vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992941 SAMN30465862 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Gansbaai Clinic wc GBP collection_date 2022-06-29 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O977/2022 isolation_source missing gisaid_accession EPI_ISL_14262336 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O977/2022 host_age 69 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992942 SAMN30465951 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-06 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA90/2022 isolation_source missing gisaid_accession EPI_ISL_14262372 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA90/2022 host_age 24 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992943 SAMN30465953 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-06-29 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA78/2022 isolation_source missing gisaid_accession EPI_ISL_14262370 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA78/2022 host_age 33 host_sex female purpose_of_sequencing Surveillance/Pfizer vaccine breakthrough sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992944 SAMN30465954 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Heideveld Emergency Centre collection_date 2022-06-21 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL11/2022 isolation_source missing gisaid_accession EPI_ISL_14262354 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL11/2022 host_age 74 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992945 SAMN30465955 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL13/2022 isolation_source missing gisaid_accession EPI_ISL_14262355 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL13/2022 host_age 69 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992946 SAMN30465957 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Macassar CDC wc MCP collection_date 2022-07-01 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O978/2022 isolation_source missing gisaid_accession EPI_ISL_14262337 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O978/2022 host_age 67 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992947 SAMN30465958 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2022-07-13 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL28/2022 isolation_source missing gisaid_accession EPI_ISL_14262363 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL28/2022 host_age 69 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992948 SAMN30465959 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Worcester Hospital wc WOC collection_date 2022-06-19 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O949/2022 isolation_source missing gisaid_accession EPI_ISL_14262322 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O949/2022 host_age 50 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992949 SAMN30465960 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by SAS Saldanha collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O974/2022 isolation_source missing gisaid_accession EPI_ISL_14262334 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O974/2022 host_age 45 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992950 SAMN30465964 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-22 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL09/2022 isolation_source missing gisaid_accession EPI_ISL_14262352 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL09/2022 host_age 13 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992951 SAMN30465965 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-13 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA93/2022 isolation_source missing gisaid_accession EPI_ISL_14262375 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA93/2022 host_age 34 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992952 SAMN30465863 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2022-06-19 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BK93/2022 isolation_source missing gisaid_accession EPI_ISL_14262342 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BK93/2022 host_age 48 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992953 SAMN30465969 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by New Somerset Hospital wc NSH collection_date 2022-06-18 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O947/2022 isolation_source missing gisaid_accession EPI_ISL_14262321 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O947/2022 host_age 36 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992954 SAMN30465865 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Lancet collection_date 2022-07-11 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-LA-ZA96/2022 isolation_source missing gisaid_accession EPI_ISL_14262378 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-LA-ZA96/2022 host_age 50 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992955 SAMN30465867 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Red Cross Children's Hospital wc RXH collection_date 2022-06-28 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-BL19/2022 isolation_source missing gisaid_accession EPI_ISL_14262360 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-BL19/2022 host_age 6 host_sex female purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS15992956 SAMN30465873 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Valkenberg Hospital wc VBH collection_date 2022-06-23 geo_loc_name South Africa:Northern Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GP-O963/2022 isolation_source missing gisaid_accession EPI_ISL_14262329 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GP-O963/2022 host_age 40 host_sex male purpose_of_sequencing Surveillance sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated