Genomic surveillance of SARS-CoV-2 in South Africa

SRX18535627 SCV2-GP-N307 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000219 SAMN29932467 SCV2-GP-N307 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535628 SCV2-GP-O863 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000220 SAMN29932493 SCV2-GP-O863 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535629 SCV2-GP-O872 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000221 SAMN29932502 SCV2-GP-O872 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535630 SCV2-GP-O873 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000222 SAMN29932503 SCV2-GP-O873 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535631 SCV2-GP-O875 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000223 SAMN29932504 SCV2-GP-O875 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535632 SCV2-GP-O876 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000224 SAMN29932505 SCV2-GP-O876 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535633 SCV2-GP-O877 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000225 SAMN29932506 SCV2-GP-O877 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535634 SCV2-GP-O878 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000226 SAMN29932507 SCV2-GP-O878 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535635 SCV2-GP-O879 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000227 SAMN29932508 SCV2-GP-O879 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535636 SCV2-GP-O880 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000228 SAMN29932509 SCV2-GP-O880 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535637 SCV2-GP-O881 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000229 SAMN29932510 SCV2-GP-O881 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535638 SCV2-GP-O882 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000230 SAMN29932511 SCV2-GP-O882 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535639 SCV2-GP-O864 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000231 SAMN29932494 SCV2-GP-O864 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535640 SCV2-GP-O883 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000232 SAMN29932512 SCV2-GP-O883 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535641 SCV2-GP-O884 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000233 SAMN29932513 SCV2-GP-O884 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535642 SCV2-GP-O885 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000234 SAMN29932514 SCV2-GP-O885 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535643 SCV2-GP-O886 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000235 SAMN29932515 SCV2-GP-O886 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535644 SCV2-GP-O887 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000236 SAMN29932516 SCV2-GP-O887 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535645 SCV2-GP-O888 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000237 SAMN29932517 SCV2-GP-O888 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535646 SCV2-GP-O889 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000238 SAMN29932518 SCV2-GP-O889 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535647 SCV2-GP-O890 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000239 SAMN29932519 SCV2-GP-O890 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535648 SCV2-GP-O891 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000240 SAMN29932520 SCV2-GP-O891 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535649 SCV2-GP-O893 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000241 SAMN29932521 SCV2-GP-O893 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535650 SCV2-GP-O865 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000242 SAMN29932495 SCV2-GP-O865 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535651 SCV2-GS-B971 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000243 SAMN29932574 SCV2-GS-B971 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535652 SCV2-GS-BK11 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000244 SAMN29932601 SCV2-GS-BK11 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535653 SCV2-GS-BK12 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000245 SAMN29932602 SCV2-GS-BK12 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535654 SCV2-GS-BK13 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000246 SAMN29932603 SCV2-GS-BK13 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535655 SCV2-GS-BK14 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000247 SAMN29932604 SCV2-GS-BK14 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535656 SCV2-GS-BK17 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000248 SAMN29932605 SCV2-GS-BK17 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535657 SCV2-GS-BK18 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000249 SAMN29932606 SCV2-GS-BK18 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535658 SCV2-GS-BK19 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000250 SAMN29932607 SCV2-GS-BK19 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535659 SCV2-GS-BK20 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000251 SAMN29932608 SCV2-GS-BK20 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535660 SCV2-GS-BK21 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000252 SAMN29932609 SCV2-GS-BK21 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535661 SCV2-GP-O866 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000253 SAMN29932496 SCV2-GP-O866 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535662 SCV2-GS-BK22 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000254 SAMN29932610 SCV2-GS-BK22 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535663 SCV2-GS-BK23 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000255 SAMN29932611 SCV2-GS-BK23 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535664 SCV2-GS-BK24 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000256 SAMN29932612 SCV2-GS-BK24 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535665 SCV2-GS-BK25 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000257 SAMN29932613 SCV2-GS-BK25 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535666 SCV2-GS-BK26 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000258 SAMN29932614 SCV2-GS-BK26 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535667 SCV2-GS-BK27 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000259 SAMN29932615 SCV2-GS-BK27 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535668 SCV2-GS-BK28 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000260 SAMN29932616 SCV2-GS-BK28 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535669 SCV2-GS-BK29 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000261 SAMN29932617 SCV2-GS-BK29 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535670 SCV2-GS-BK31 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000262 SAMN29932618 SCV2-GS-BK31 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535671 SCV2-GS-BK32 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000263 SAMN29932619 SCV2-GS-BK32 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535672 SCV2-GP-O867 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000264 SAMN29932497 SCV2-GP-O867 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535673 SCV2-GS-BK33 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000265 SAMN29932620 SCV2-GS-BK33 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535674 SCV2-GS-BK34 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000266 SAMN29932621 SCV2-GS-BK34 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535675 SCV2-GS-BK35 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000267 SAMN29932622 SCV2-GS-BK35 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535676 SCV2-GS-BK36 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000268 SAMN29932623 SCV2-GS-BK36 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535677 SCV2-GS-BK37 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000269 SAMN29932624 SCV2-GS-BK37 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535678 SCV2-GS-BK38 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000270 SAMN29932625 SCV2-GS-BK38 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535679 SCV2-GS-BK39 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000271 SAMN29932626 SCV2-GS-BK39 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535680 SCV2-GS-BK40 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000272 SAMN29932627 SCV2-GS-BK40 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535681 SCV2-GS-BK41 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000273 SAMN29932628 SCV2-GS-BK41 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535682 SCV2-GS-BK42 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000274 SAMN29932629 SCV2-GS-BK42 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535683 SCV2-GP-O868 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000275 SAMN29932498 SCV2-GP-O868 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535684 SCV2-GS-BK43 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000276 SAMN29932630 SCV2-GS-BK43 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535685 SCV2-GS-C032 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000277 SAMN29932677 SCV2-GS-C032 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535686 SCV2-GS-C076 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000278 SAMN29932680 SCV2-GS-C076 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535687 SCV2-GS-C205 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000279 SAMN29932684 SCV2-GS-C205 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535688 SCV2-GS-C214 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000280 SAMN29932687 SCV2-GS-C214 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535689 SCV2-GS-C239 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000281 SAMN29932688 SCV2-GS-C239 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535690 SCV2-GS-C368 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000282 SAMN29932694 SCV2-GS-C368 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535691 SCV2-GS-C733 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000283 SAMN29932719 SCV2-GS-C733 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535692 SCV2-LA-ZA39 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000284 SAMN29932744 SCV2-LA-ZA39 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535693 SCV2-LA-ZA40 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000285 SAMN29932745 SCV2-LA-ZA40 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535694 SCV2-GP-O869 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000286 SAMN29932499 SCV2-GP-O869 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535695 SCV2-LA-ZA41 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000287 SAMN29932746 SCV2-LA-ZA41 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535696 SCV2-LA-ZA42 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000288 SAMN29932747 SCV2-LA-ZA42 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535697 SCV2-LA-ZA43 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000289 SAMN29932748 SCV2-LA-ZA43 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535698 SCV2-LA-ZA44 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000290 SAMN29932749 SCV2-LA-ZA44 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535699 SCV2-LA-ZA45 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000291 SAMN29932750 SCV2-LA-ZA45 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535700 SCV2-LA-ZA46 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000292 SAMN29932751 SCV2-LA-ZA46 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535701 SCV2-LA-ZA47 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000293 SAMN29932752 SCV2-LA-ZA47 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535702 SCV2-LA-ZA48 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000294 SAMN29932753 SCV2-LA-ZA48 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535703 SCV2-LA-ZA49 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000295 SAMN29932754 SCV2-LA-ZA49 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535704 SCV2-LA-ZA50 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000296 SAMN29932755 SCV2-LA-ZA50 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535705 SCV2-GP-O870 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000297 SAMN29932500 SCV2-GP-O870 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX18535706 SCV2-GP-O871 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS16000298 SAMN29932501 SCV2-GP-O871 AMPLICON VIRAL RNA PCR Illumina MiSeq