SRX18665804 COVID-HH-TD_COVIDseq_Lib-30_S18 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109382 hCoV-19/Pakistan/IDRL-AKU-KHI-78868-S18/2022 COVID-HH-TD_COVIDseq_Lib-30_S18 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665805 COVID-HH-TD_COVIDseq_Lib-30_S5 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109383 hCoV-19/Pakistan/IDRL-AKU-KHI-78950-S5/2022 COVID-HH-TD_COVIDseq_Lib-30_S5 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665806 COVID-HH-TD_COVIDseq_Lib-30_S10 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109384 hCoV-19/Pakistan/IDRL-AKU-KHI-79073-S10/2022 COVID-HH-TD_COVIDseq_Lib-30_S10 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665807 COVID-HH-TD_COVIDseq_Lib-30_S9 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109385 hCoV-19/Pakistan/IDRL-AKU-KHI-79078-S9/2022 COVID-HH-TD_COVIDseq_Lib-30_S9 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665808 COVID-HH-TD_COVIDseq_Lib-30_S12 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109386 hCoV-19/Pakistan/IDRL-AKU-KHI-79110-S12/2022 COVID-HH-TD_COVIDseq_Lib-30_S12 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665809 COVID-HH-TD_COVIDseq_Lib-30_S13 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109387 hCoV-19/Pakistan/IDRL-AKU-KHI-79116-S13/2022 COVID-HH-TD_COVIDseq_Lib-30_S13 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665810 COVID-HH-TD_COVIDseq_Lib-30_S14 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109388 hCoV-19/Pakistan/IDRL-AKU-KHI-79305-S14/2022 COVID-HH-TD_COVIDseq_Lib-30_S14 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665811 COVID-HH-TD_COVIDseq_Lib-30_S17 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109389 hCoV-19/Pakistan/IDRL-AKU-KHI-79330-S17/2022 COVID-HH-TD_COVIDseq_Lib-30_S17 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665812 COVID-HH-TD_COVIDseq_Lib-30_S16 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109390 hCoV-19/Pakistan/IDRL-AKU-KHI-79354-S16/2022 COVID-HH-TD_COVIDseq_Lib-30_S16 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665813 COVID-HH-TD_COVIDseq_Lib-30_S15 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109391 hCoV-19/Pakistan/IDRL-AKU-KHI-79364-S15/2022 COVID-HH-TD_COVIDseq_Lib-30_S15 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665814 COVID-HH-TD_COVIDseq_Lib-30_S3 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109392 hCoV-19/Pakistan/IDRL-AKU-KHI-78976-S3/2022 COVID-HH-TD_COVIDseq_Lib-30_S3 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665815 COVID-HH-TD_COVIDseq_Lib-30_S2 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109393 hCoV-19/Pakistan/IDRL-AKU-KHI-78992-S2/2022 COVID-HH-TD_COVIDseq_Lib-30_S2 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665816 COVID-HH-TD_COVIDseq_Lib-30_S1 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109394 hCoV-19/Pakistan/IDRL-AKU-KHI-78993-S1/2022 COVID-HH-TD_COVIDseq_Lib-30_S1 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665817 COVID-HH-TD_COVIDseq_Lib-30_S4 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109395 hCoV-19/Pakistan/IDRL-AKU-KHI-78994-S4/2022 COVID-HH-TD_COVIDseq_Lib-30_S4 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665818 COVID-HH-TD_COVIDseq_Lib-30_S7 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109396 hCoV-19/Pakistan/IDRL-AKU-KHI-79022-S7/2022 COVID-HH-TD_COVIDseq_Lib-30_S7 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665819 COVID-HH-TD_COVIDseq_Lib-30_S8 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109397 hCoV-19/Pakistan/IDRL-AKU-KHI-79049-S8/2022 COVID-HH-TD_COVIDseq_Lib-30_S8 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665820 COVID-HH-TD_COVIDseq_Lib-30_S6 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109398 hCoV-19/Pakistan/IDRL-AKU-KHI-79051-S6/2022 COVID-HH-TD_COVIDseq_Lib-30_S6 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100 SRX18665821 COVID-HH-TD_COVIDseq_Lib-30_S11 SRP337812 PRJNA764553 The sequencing for SARS-CoV-2 is performed using ARTIC-NEB: SARS-CoV-2 Library Preparation v4 protocol. Briefly, the ARTIC protocol is used to attain the amplicon from the extracted RNA, followed by FS DNA library preparation kit to make the amplicon library, that is loaded onto the Illumina iSeq100 platform for sequencing at Infectious Diseases Research Laboratory (IDRL), Department of Pediatrics and Child Health, The Aga Khan University, Karachi, Pakistan. The consensus genomes are generated by IDSeq miniWDL SARS-CoV-2 workflow. SRS16109399 hCoV-19/Pakistan/IDRL-AKU-KHI-79071-S11/2022 COVID-HH-TD_COVIDseq_Lib-30_S11 AMPLICON VIRAL RNA RT-PCR Illumina iSeq 100