SRS17613258 SAMN35029457 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039759/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.24 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.573 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.386 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613259 SAMN35029666 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039760/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.574 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.182 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.167 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613260 SAMN35029665 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039763/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.394 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.634 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.766 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613261 SAMN35029664 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039764/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.063 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.146 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.842 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613262 SAMN35029740 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039766/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.627 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.704 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.180 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613263 SAMN35029739 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039767/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.749 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.118 lineage/clade name FE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613264 SAMN35029738 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039773/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.247 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.98 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.770 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613265 SAMN35029701 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC1039780/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.436 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.488 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.758 lineage/clade name XBB.1.22.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613266 SAMN35029663 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039781/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613267 SAMN35029696 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039788/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.687 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.227 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.827 lineage/clade name EM.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613268 SAMN35029556 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039789/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.897 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.731 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.218 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613269 SAMN35029608 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039790/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.818 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.656 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613270 SAMN35029555 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039791/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613271 SAMN35029471 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1039793/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613272 SAMN35029490 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039794/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.21 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.904 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.187 lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613273 SAMN35029607 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039795/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.561 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.623 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.394 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613274 SAMN35029554 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039796/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.083 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.230 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613275 SAMN35029553 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039798/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.037 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.587 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.649 lineage/clade name EU.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613276 SAMN35029552 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039799/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.062 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.596 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.795 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613277 SAMN35029606 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039802/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.299 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.234 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.247 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613278 SAMN35029551 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039807/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.362 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.258 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.124 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613279 SAMN35029605 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039805/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.69 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.347 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613280 SAMN35029604 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039808/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.557 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.12 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.423 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613281 SAMN35029550 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039812/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613282 SAMN35029603 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039813/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.76 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.081 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.910 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613283 SAMN35029470 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1039815/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.151 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.696 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.843 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613284 SAMN35029602 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039818/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.998 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.432 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613285 SAMN35029612 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC1039820/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.998 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.339 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.474 lineage/clade name XBB.1.5.17 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613286 SAMN35029601 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039821/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.472 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.199 lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613287 SAMN35029549 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039822/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.97 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.546 lineage/clade name FD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613288 SAMN35029489 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039829/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.401 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.456 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.766 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613289 SAMN35029548 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039832/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.511 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.151 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.360 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613290 SAMN35029547 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039843/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.153 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.627 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.425 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613291 SAMN35029546 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039855/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.618 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.525 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.552 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613292 SAMN35029743 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC1039856/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.023 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.518 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.091 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613293 SAMN35029755 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1039857/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.27 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613294 SAMN35029660 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039938/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.826 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.595 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.253 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613295 SAMN35029659 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039939/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.31 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.375 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.641 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613296 SAMN35029456 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039940/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.533 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.404 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613297 SAMN35029455 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039941/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 10 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.698 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.740 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613298 SAMN35029658 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039944/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.028 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.761 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.637 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613299 SAMN35029454 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039945/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.733 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.978 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.785 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613300 SAMN35029678 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1039946/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.422 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.547 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.099 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613301 SAMN35029453 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039948/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.671 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.521 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.615 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613302 SAMN35029657 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039949/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.657 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.807 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.578 lineage/clade name XBB.1.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613303 SAMN35029656 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039951/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.679 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.768 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Undetermined lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613304 SAMN35029653 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039956/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613305 SAMN35029652 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039957/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613306 SAMN35029655 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039952/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.503 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 41.983 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613307 SAMN35029654 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039955/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613308 SAMN35029452 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1039958/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613309 SAMN35029757 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/AL-CDC-LC1039959/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Alabama host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.935 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.292 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.033 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613310 SAMN35029651 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039960/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.166 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.07 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 44.578 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613311 SAMN35029650 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039961/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.62 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.473 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.125 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613312 SAMN35029649 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039962/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.928 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.902 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.597 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613313 SAMN35029648 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039963/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.802 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613314 SAMN35029646 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039965/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.147 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.872 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.854 lineage/clade name XBB.1.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613315 SAMN35029647 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039964/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.262 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.891 lineage/clade name XBB.1.5.10 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613316 SAMN35029645 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039967/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.014 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.833 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.367 lineage/clade name XBB.1.5.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613317 SAMN35029677 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1039966/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.659 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613318 SAMN35029676 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1039968/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.951 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.583 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613319 SAMN35029464 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1039970/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.431 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.936 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.490 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613320 SAMN35029465 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1039969/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.379 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.948 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.212 lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613321 SAMN35029747 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC1039972/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.982 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.269 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613322 SAMN35029644 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039971/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.732 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.017 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.651 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613323 SAMN35029643 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039973/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.12 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.334 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.547 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613324 SAMN35029737 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039976/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.421 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.87 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.738 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613325 SAMN35029675 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1039975/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.23 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.372 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.174 lineage/clade name EU.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613326 SAMN35029703 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040132/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613327 SAMN35029702 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040133/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613328 SAMN35029460 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1040135/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613329 SAMN35029459 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1040139/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613330 SAMN35029615 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040138/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613331 SAMN35029614 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040140/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.644 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.223 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.735 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613332 SAMN35029697 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/LA-CDC-LC1040141/2023 collected_by Laboratory Corporation of America collection_date 2023-04-24 isolation_source Nasal Swabs geo_loc_name USA: Louisiana host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.773 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.967 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.016 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613333 SAMN35029518 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040143/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.371 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.949 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613334 SAMN35029516 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040145/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.423 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.553 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.002 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613335 SAMN35029517 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040144/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.695 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.075 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.899 lineage/clade name XBB.1.16.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613336 SAMN35029583 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040146/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.952 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.633 lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613337 SAMN35029515 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040147/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.826 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.487 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613338 SAMN35029667 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC1040148/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.892 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.752 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.263 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613339 SAMN35029482 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040153/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613340 SAMN35029687 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040150/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.405 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.376 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.412 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613341 SAMN35029686 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040152/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613342 SAMN35029669 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040151/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613343 SAMN35029481 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040154/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613344 SAMN35029514 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040156/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.709 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.039 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613345 SAMN35029512 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040158/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.132 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.297 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613346 SAMN35029513 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040157/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.774 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.727 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.152 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613347 SAMN35029511 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040159/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.3 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.822 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.631 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613348 SAMN35029510 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040160/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 91 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.743 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.703 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.024 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613349 SAMN35029581 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040163/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.025 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.448 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613350 SAMN35029582 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040162/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.575 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.303 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.181 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613351 SAMN35029684 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040164/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.847 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.536 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.099 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613352 SAMN35029685 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040161/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.594 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.229 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.033 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613353 SAMN35029580 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040165/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.113 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613354 SAMN35029579 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040168/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.79 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.805 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.889 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613355 SAMN35029480 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040167/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.484 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.399 lineage/clade name XBB.1.5.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613356 SAMN35029578 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040170/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.297 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.466 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.107 lineage/clade name XBB.1.16.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613357 SAMN35029749 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1040169/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.411 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.590 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613358 SAMN35029754 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1039858/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613359 SAMN35029695 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039860/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613360 SAMN35029600 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039862/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.886 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.465 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.784 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613361 SAMN35029488 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039859/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613362 SAMN35029545 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039863/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.46 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.308 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.109 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613363 SAMN35029469 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1039864/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.398 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.218 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.232 lineage/clade name XBB.1.5.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613364 SAMN35029599 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039866/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.919 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.353 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.889 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613365 SAMN35029543 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039868/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.675 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.972 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.361 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613366 SAMN35029694 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039865/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.091 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.5 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.745 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613367 SAMN35029544 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039867/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.317 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 40.144 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613368 SAMN35029598 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039869/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.228 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.202 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.315 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613369 SAMN35029487 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039870/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.83 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.268 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.871 lineage/clade name XBB.1.5.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613370 SAMN35029542 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039871/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.878 lineage/clade name XBB.1.5.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613371 SAMN35029541 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039872/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.471 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.584 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.178 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613372 SAMN35029540 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039875/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.862 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.640 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613373 SAMN35029597 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039874/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.494 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.847 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.742 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613374 SAMN35029538 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039878/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.439 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.021 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.524 lineage/clade name XBB.1.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613375 SAMN35029595 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039879/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.225 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.1 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.521 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613376 SAMN35029596 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039876/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.707 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.802 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.523 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613377 SAMN35029539 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039877/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.884 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.77 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.861 lineage/clade name XBB.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613378 SAMN35029537 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039880/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.462 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.843 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613379 SAMN35029536 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039881/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.335 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.748 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.983 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613380 SAMN35029693 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039885/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613381 SAMN35029535 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039882/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.07 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.31 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.162 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613382 SAMN35029594 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039887/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613383 SAMN35029611 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC1039884/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613384 SAMN35029486 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039888/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.498 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.843 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.992 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613385 SAMN35029485 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039889/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.697 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.262 lineage/clade name XBB.1.5.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613386 SAMN35029593 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039892/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613387 SAMN35029692 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039891/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613388 SAMN35029688 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040035/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.089 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.808 lineage/clade name EU.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613389 SAMN35029533 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039895/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.263 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.321 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 22.330 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613390 SAMN35029534 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039893/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 87 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613391 SAMN35029467 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1040036/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.203 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.851 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.253 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613392 SAMN35029520 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040042/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.307 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.061 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613393 SAMN35029751 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1040041/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.997 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.391 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.515 lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613394 SAMN35029610 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC1040037/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.705 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.671 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.513 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613395 SAMN35029668 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/ME-CDC-LC1040044/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Maine host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.549 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 42.301 lineage/clade name EM.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613396 SAMN35029742 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC1040043/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.35 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.414 lineage/clade name EU.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613397 SAMN35029723 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040049/2023 collected_by Laboratory Corporation of America collection_date 2023-04-24 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613398 SAMN35029750 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1040045/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.33 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.32 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.670 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613399 SAMN35029632 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040051/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613400 SAMN35029722 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040050/2023 collected_by Laboratory Corporation of America collection_date 2023-04-24 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613401 SAMN35029631 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040054/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613402 SAMN35029447 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040052/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 16 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613403 SAMN35029721 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040055/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.323 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.681 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.548 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613404 SAMN35029463 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1040056/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.993 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.384 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.694 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613405 SAMN35029744 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC1040061/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.454 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.686 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.921 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613406 SAMN35029630 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040062/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.556 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.044 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.217 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613407 SAMN35029674 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040058/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.982 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.624 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.376 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613408 SAMN35029673 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040064/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.986 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.242 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.536 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613409 SAMN35029628 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040066/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.525 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.561 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.283 lineage/clade name XBB.1.5.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613410 SAMN35029629 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040063/2023 collected_by Laboratory Corporation of America collection_date 2023-04-24 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.544 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.232 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.825 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613411 SAMN35029462 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1040067/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.013 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.221 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.189 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613412 SAMN35029625 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040071/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.688 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.134 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.223 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613413 SAMN35029626 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040069/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.415 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.177 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.916 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613414 SAMN35029627 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040068/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.442 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.334 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613415 SAMN35029623 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040074/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613416 SAMN35029622 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040076/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name FH.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613417 SAMN35029624 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040072/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613418 SAMN35029461 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/SC-CDC-LC1040073/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: South Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613419 SAMN35029621 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040079/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613420 SAMN35029719 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040080/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.067 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.056 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.899 lineage/clade name EG.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613421 SAMN35029720 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040077/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613422 SAMN35029565 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040208/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.592 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.378 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.027 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613423 SAMN35029474 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040210/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613424 SAMN35029475 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040209/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613425 SAMN35029500 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040213/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.495 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.073 lineage/clade name EG.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613426 SAMN35029492 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC1040214/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.066 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.486 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613427 SAMN35029563 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040215/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.475 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.773 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.861 lineage/clade name XBB.1.5.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613428 SAMN35029564 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040211/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613429 SAMN35029473 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040212/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.036 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.581 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.520 lineage/clade name XBB.1.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613430 SAMN35029498 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040220/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.397 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.499 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613431 SAMN35029499 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040218/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.65 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.541 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.016 lineage/clade name XBB.1.5.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613432 SAMN35029491 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/OH-CDC-LC1040217/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.918 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.395 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.582 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613433 SAMN35029496 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040222/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.981 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.714 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.886 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613434 SAMN35029562 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040224/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.018 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.848 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.933 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613435 SAMN35029609 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NH-CDC-LC1040225/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Hampshire host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.259 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.685 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.044 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613436 SAMN35029497 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040221/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.25 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.480 lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613437 SAMN35029495 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040226/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.208 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.317 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613438 SAMN35029561 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040227/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613439 SAMN35029494 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040229/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613440 SAMN35029472 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040228/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613441 SAMN35029559 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040231/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.503 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.885 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.994 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613442 SAMN35029560 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040230/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 7 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.16.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613443 SAMN35029741 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DE-CDC-LC1040232/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Delaware host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.497 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.54 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 34.774 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613444 SAMN35029493 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040233/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.17 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613445 SAMN35029679 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040237/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613446 SAMN35029557 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040236/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613447 SAMN35029691 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039896/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.552 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.3 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.069 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613448 SAMN35029558 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040234/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613449 SAMN35029690 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039897/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.456 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.886 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.289 lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613450 SAMN35029689 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1039898/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.765 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.895 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.771 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613451 SAMN35029592 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039900/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 4 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613452 SAMN35029532 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039899/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613453 SAMN35029753 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1039903/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613454 SAMN35029530 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039904/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613455 SAMN35029531 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039901/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613456 SAMN35029483 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039905/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613457 SAMN35029484 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1039902/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613458 SAMN35029529 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039906/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613459 SAMN35029591 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039908/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.141 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.205 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.599 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613460 SAMN35029528 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039907/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.056 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.479 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.229 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613461 SAMN35029527 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039909/2023 collected_by Laboratory Corporation of America collection_date 2023-04-24 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.879 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.361 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.537 lineage/clade name XBF BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613462 SAMN35029526 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039910/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.294 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.943 lineage/clade name XBB.1.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613463 SAMN35029525 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039911/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.438 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.018 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.422 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613464 SAMN35029524 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039912/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.229 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.463 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.320 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613465 SAMN35029590 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039913/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.502 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.913 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.717 lineage/clade name XBB.1.5.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613466 SAMN35029523 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039919/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.898 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.094 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.765 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613467 SAMN35029588 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039923/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613468 SAMN35029587 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039924/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613469 SAMN35029522 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039920/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.74 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.031 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.683 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613470 SAMN35029589 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039916/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.289 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.6 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.699 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613471 SAMN35029752 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1039926/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613472 SAMN35029756 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CA-CDC-LC1039927/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613473 SAMN35029521 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1039929/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.731 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.975 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.896 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613474 SAMN35029585 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039932/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.983 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.754 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.794 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613475 SAMN35029468 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1039928/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.721 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.797 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.555 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613476 SAMN35029586 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039931/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.666 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.616 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.884 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613477 SAMN35029584 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1039933/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.724 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.678 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 23.894 lineage/clade name XBB.1.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613478 SAMN35029662 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039934/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.893 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.264 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.702 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613479 SAMN35029661 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039936/2023 collected_by Laboratory Corporation of America collection_date 2023-05-01 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.822 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.673 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.969 lineage/clade name XBB.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613480 SAMN35029446 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040085/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.646 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.278 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 38.066 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613481 SAMN35029717 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040087/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.061 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.691 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613482 SAMN35029715 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040093/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.821 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.589 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 37.388 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613483 SAMN35029716 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040092/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.238 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.104 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.597 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613484 SAMN35029718 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040086/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 17.626 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 15.666 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.134 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613485 SAMN35029620 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040090/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.693 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.716 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.331 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613486 SAMN35029713 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040097/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613487 SAMN35029714 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040094/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.122 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.032 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.654 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613488 SAMN35029445 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040098/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613489 SAMN35029698 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC1040095/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex male host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.641 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.583 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.412 lineage/clade name XBB.1.5.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613490 SAMN35029444 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040099/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613491 SAMN35029712 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040100/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.214 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.856 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.521 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613492 SAMN35029711 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040101/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.26 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.299 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.532 lineage/clade name XBB.1.5.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613493 SAMN35029709 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040103/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.404 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.209 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.992 lineage/clade name XBB.1.17.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613494 SAMN35029710 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040102/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.324 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.516 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.071 lineage/clade name XBB.1.5.7 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613495 SAMN35029708 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040104/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.486 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.398 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.520 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613496 SAMN35029706 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040107/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.09 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.178 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.999 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613497 SAMN35029704 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040109/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.615 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 28.418 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.402 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613498 SAMN35029705 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040108/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 83 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.988 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.955 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.061 lineage/clade name XBB.1.5.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613499 SAMN35029443 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040105/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.058 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.968 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.902 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613500 SAMN35029707 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040106/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.534 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.186 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.527 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613501 SAMN35029619 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040111/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.775 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.733 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.469 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613502 SAMN35029442 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040112/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.163 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.874 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.241 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613503 SAMN35029441 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040119/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.66 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.133 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.145 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613504 SAMN35029672 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040117/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.393 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.901 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.652 lineage/clade name EU.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613505 SAMN35029618 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040127/2023 collected_by Laboratory Corporation of America collection_date 2023-04-25 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.447 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.276 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 20.970 lineage/clade name XBB.1.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613506 SAMN35029440 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040128/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.363 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.669 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613507 SAMN35029671 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040121/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.51 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.939 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.427 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613508 SAMN35029519 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040124/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.605 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.795 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.896 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613509 SAMN35029617 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040129/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.923 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.128 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613510 SAMN35029616 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040131/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.441 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.922 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613511 SAMN35029700 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC1039977/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.259 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.067 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613512 SAMN35029458 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/TN-CDC-LC1039980/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Tennessee host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 16.767 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 14.759 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.150 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613513 SAMN35029670 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MD-CDC-LC1040130/2023 collected_by Laboratory Corporation of America collection_date 2023-04-26 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.319 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.064 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.005 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613514 SAMN35029746 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC1039981/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.265 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.215 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 36.334 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613515 SAMN35029699 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/GA-CDC-LC1039978/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Georgia host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.206 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.411 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.218 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613516 SAMN35029736 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039979/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.985 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.272 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 24.934 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613517 SAMN35029745 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/DC-CDC-LC1039982/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: District of Columbia host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.843 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.73 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 26.488 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613518 SAMN35029642 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039983/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.611 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 39.282 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613519 SAMN35029641 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039990/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.322 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.841 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.871 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613520 SAMN35029734 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039993/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.317 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.803 lineage/clade name XBB.1.5.35 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613521 SAMN35029735 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1039987/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 22.055 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.963 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.214 lineage/clade name FE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613522 SAMN35029639 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040002/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.435 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 17.74 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 20.519 lineage/clade name XBB.1.5.12 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613523 SAMN35029640 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1039994/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.915 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.485 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.527 lineage/clade name XBB.1.5.31 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613524 SAMN35029450 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040001/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 19.806 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.077 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.650 lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613525 SAMN35029733 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040003/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.572 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.96 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.143 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613526 SAMN35029451 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040000/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 20.901 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.053 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.873 lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613527 SAMN35029638 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040009/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613528 SAMN35029731 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040012/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.894 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.409 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.536 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613529 SAMN35029636 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040015/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613530 SAMN35029732 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040004/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 78 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613531 SAMN35029637 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040010/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.098 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.821 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.416 lineage/clade name XBB.1.5.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613532 SAMN35029729 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040019/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 86 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613533 SAMN35029728 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040020/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613534 SAMN35029730 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040018/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613535 SAMN35029727 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040021/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613536 SAMN35029635 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040026/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.28 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613537 SAMN35029449 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040027/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.2.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613538 SAMN35029726 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040022/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613539 SAMN35029725 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040023/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613540 SAMN35029448 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/VA-CDC-LC1040028/2023 collected_by Laboratory Corporation of America collection_date 2023-04-29 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613541 SAMN35029634 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040029/2023 collected_by Laboratory Corporation of America collection_date 2023-04-28 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.957 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 19.607 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.127 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613542 SAMN35029724 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/FL-CDC-LC1040032/2023 collected_by Laboratory Corporation of America collection_date 2023-04-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.638 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.981 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.361 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613543 SAMN35029633 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040034/2023 collected_by Laboratory Corporation of America collection_date 2023-04-30 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.437 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.45 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.321 lineage/clade name XBB.1.5.26 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613544 SAMN35029682 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040177/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.863 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.237 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.694 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613545 SAMN35029576 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040176/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.095 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.399 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.037 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613546 SAMN35029575 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040179/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613547 SAMN35029509 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040172/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.542 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.687 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 32.969 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613548 SAMN35029683 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040175/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 74 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.369 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.445 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.039 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613549 SAMN35029577 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040174/2023 collected_by Laboratory Corporation of America collection_date 2023-04-22 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 29.6 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 27.145 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.856 lineage/clade name XBB.1.5.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613550 SAMN35029574 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040180/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613551 SAMN35029573 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040182/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613552 SAMN35029508 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040181/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 15 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613553 SAMN35029507 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040183/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613554 SAMN35029506 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040186/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.766 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.396 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.699 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613555 SAMN35029681 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040187/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.784 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.338 lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613556 SAMN35029479 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040188/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.334 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.006 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.342 lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613557 SAMN35029572 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040184/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 9 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.9.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613558 SAMN35029748 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/CT-CDC-LC1040185/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.027 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 26.148 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.301 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613559 SAMN35029570 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040190/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 18.797 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.184 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.776 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613560 SAMN35029613 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NC-CDC-LC1040191/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: North Carolina host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.882 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.648 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 28.996 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613561 SAMN35029571 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040189/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.093 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.653 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 33.665 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613562 SAMN35029505 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040192/2023 collected_by Laboratory Corporation of America collection_date 2023-04-23 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.975 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.86 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.526 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613563 SAMN35029567 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040195/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.338 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.863 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.119 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613564 SAMN35029478 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040196/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.602 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.617 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.102 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613565 SAMN35029569 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040193/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.391 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 25.675 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 21.866 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613566 SAMN35029568 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040194/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 25.221 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 22.343 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 25.654 lineage/clade name XBB.1.16 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613567 SAMN35029566 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NJ-CDC-LC1040199/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 21.364 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 18.608 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 27.060 lineage/clade name XBB.1.16.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613568 SAMN35029466 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/RI-CDC-LC1040197/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Rhode Island host Homo sapiens host_disease COVID-19 host_sex female host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.673 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.985 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 29.002 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613569 SAMN35029477 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040200/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 Unknown diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 Unknown diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 Unknown lineage/clade name XBB.1.5.30 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613570 SAMN35029504 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040201/2023 collected_by Laboratory Corporation of America collection_date 2023-04-19 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 27.325 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 20.614 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.157 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613571 SAMN35029503 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040205/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.634 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.633 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.518 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613572 SAMN35029680 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/MA-CDC-LC1040202/2023 collected_by Laboratory Corporation of America collection_date 2023-04-20 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 24.75 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 21.35 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 31.303 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613573 SAMN35029476 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/PA-CDC-LC1040204/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 26.329 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 23.601 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 30.269 lineage/clade name XBB.1.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613574 SAMN35029502 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040206/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 28.846 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 24.739 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.182 lineage/clade name XBB.1.5.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS17613575 SAMN35029501 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716984 PRJNA716984 Isolate SARS-CoV-2/Human/USA/NY-CDC-LC1040207/2023 collected_by Laboratory Corporation of America collection_date 2023-04-21 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 85 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_gene_name_1 N1 gene diagnostic_pcr_protocol_1 Labcorp LDT diagnostic_pcr_Ct_value_1 23.744 diagnostic_gene_name_2 N2 gene diagnostic_pcr_protocol_2 Labcorp LDT diagnostic_pcr_Ct_value_2 16.993 diagnostic_gene_name_3 RP gene diagnostic_pcr_protocol_3 Labcorp LDT diagnostic_pcr_Ct_value_3 35.598 lineage/clade name XBB.1.22 BioSampleModel SARS-CoV-2: clinical or host-associated