SRX22257635 QDX86168639 <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310647"> <IDENTIFIERS> <PRIMARY_ID>SRS19310647</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86168639/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257636" alias="QDX86168640"> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257685" alias="QDX86222629"> <IDENTIFIERS> <PRIMARY_ID>SRX22257685</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222629</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310699"> <IDENTIFIERS> <PRIMARY_ID>SRS19310699</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222629/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310697"> <IDENTIFIERS> <PRIMARY_ID>SRS19310697</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222636/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257690" alias="QDX86222637"> <IDENTIFIERS> <PRIMARY_ID>SRX22257690</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222637</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310701"> <IDENTIFIERS> <PRIMARY_ID>SRS19310701</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222637/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257691" alias="QDX86279433"> <IDENTIFIERS> <PRIMARY_ID>SRX22257691</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279433</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310702"> <IDENTIFIERS> <PRIMARY_ID>SRS19310702</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279433/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257692" alias="QDX86279435"> <IDENTIFIERS> <PRIMARY_ID>SRX22257692</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279435</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310704"> <IDENTIFIERS> <PRIMARY_ID>SRS19310704</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279435/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310711"> <IDENTIFIERS> <PRIMARY_ID>SRS19310711</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279443/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257699" alias="QDX86279444"> <IDENTIFIERS> <PRIMARY_ID>SRX22257699</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310713"> <IDENTIFIERS> <PRIMARY_ID>SRS19310713</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279456/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257706" alias="QDX86279459"> <IDENTIFIERS> <PRIMARY_ID>SRX22257706</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279459</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310718"> <IDENTIFIERS> <PRIMARY_ID>SRS19310718</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279459/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257707" alias="QDX86279461"> <IDENTIFIERS> <PRIMARY_ID>SRX22257707</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279461</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310716"> <IDENTIFIERS> <PRIMARY_ID>SRS19310716</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279461/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257709" alias="QDX86279464"> <IDENTIFIERS> <PRIMARY_ID>SRX22257709</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279464</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310717"> <IDENTIFIERS> <PRIMARY_ID>SRS19310717</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279464/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310724"> <IDENTIFIERS> <PRIMARY_ID>SRS19310724</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279470/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257715" alias="QDX86279472"> <IDENTIFIERS> <PRIMARY_ID>SRX22257715</PRIMARY_ID> <EXTERNAL_ID 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310736"> <IDENTIFIERS> <PRIMARY_ID>SRS19310736</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86356293/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257723" alias="QDX86356295"> <IDENTIFIERS> <PRIMARY_ID>SRX22257723</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257733" alias="QDX86356308"> <IDENTIFIERS> <PRIMARY_ID>SRX22257733</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356308</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310743"> <IDENTIFIERS> <PRIMARY_ID>SRS19310743</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86356308/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257736" alias="QDX86356312"> <IDENTIFIERS> <PRIMARY_ID>SRX22257736</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356312</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310747"> <IDENTIFIERS> <PRIMARY_ID>SRS19310747</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310746"> <IDENTIFIERS> <PRIMARY_ID>SRS19310746</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86356313/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257738" alias="QDX86356315"> <IDENTIFIERS> <PRIMARY_ID>SRX22257738</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356315</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310749"> <IDENTIFIERS> <PRIMARY_ID>SRS19310749</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX86356315/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257739" alias="QDX86356317"> <IDENTIFIERS> <PRIMARY_ID>SRX22257739</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356317</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310750"> <IDENTIFIERS> <PRIMARY_ID>SRS19310750</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86356317/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257740" alias="QDX86356318"> <IDENTIFIERS> <PRIMARY_ID>SRX22257740</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356318</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310753"> <IDENTIFIERS> <PRIMARY_ID>SRS19310753</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86356318/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257741" alias="QDX86356319"> <IDENTIFIERS> <PRIMARY_ID>SRX22257741</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356319</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310752"> <IDENTIFIERS> <PRIMARY_ID>SRS19310752</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86356319/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310757"> <IDENTIFIERS> <PRIMARY_ID>SRS19310757</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX86356326/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257747" alias="QDX86408400"> <IDENTIFIERS> <PRIMARY_ID>SRX22257747</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310797"> <IDENTIFIERS> <PRIMARY_ID>SRS19310797</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86168687/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257786" alias="QDX86168690"> <IDENTIFIERS> <PRIMARY_ID>SRX22257786</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168690</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310796"> <IDENTIFIERS> <PRIMARY_ID>SRS19310796</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MD-CDC-QDX86168690/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257787" alias="QDX86168691"> <IDENTIFIERS> <PRIMARY_ID>SRX22257787</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257797" alias="QDX86168715"> <IDENTIFIERS> <PRIMARY_ID>SRX22257797</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168715</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310807"> <IDENTIFIERS> <PRIMARY_ID>SRS19310807</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86168715/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257798" alias="QDX86168740"> <IDENTIFIERS> <PRIMARY_ID>SRX22257798</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168740</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310808"> <IDENTIFIERS> <PRIMARY_ID>SRS19310808</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KS-CDC-QDX86168740/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257800" alias="QDX86168744"> <IDENTIFIERS> <PRIMARY_ID>SRX22257800</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168744</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310811"> <IDENTIFIERS> <PRIMARY_ID>SRS19310811</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86168744/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257801" alias="QDX86168745"> <IDENTIFIERS> <PRIMARY_ID>SRX22257801</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168745</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310812"> <IDENTIFIERS> <PRIMARY_ID>SRS19310812</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86168745/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257802" alias="QDX86168827"> <IDENTIFIERS> <PRIMARY_ID>SRX22257802</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86168827</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310813"> <IDENTIFIERS> <PRIMARY_ID>SRS19310813</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86168827/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257803" alias="QDX86279477"> <IDENTIFIERS> <PRIMARY_ID>SRX22257803</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279477</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310817"> <IDENTIFIERS> <PRIMARY_ID>SRS19310817</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279477/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257804" alias="QDX86279478"> <IDENTIFIERS> <PRIMARY_ID>SRX22257804</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279478</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310815"> <IDENTIFIERS> <PRIMARY_ID>SRS19310815</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279478/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257805" alias="QDX86279479"> <IDENTIFIERS> <PRIMARY_ID>SRX22257805</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279479</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310820"> <IDENTIFIERS> <PRIMARY_ID>SRS19310820</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279479/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257806" alias="QDX86279480"> <IDENTIFIERS> <PRIMARY_ID>SRX22257806</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279480</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310816"> <IDENTIFIERS> <PRIMARY_ID>SRS19310816</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279480/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257807" alias="QDX86279481"> <IDENTIFIERS> <PRIMARY_ID>SRX22257807</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279481</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310814"> <IDENTIFIERS> <PRIMARY_ID>SRS19310814</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279481/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257808" alias="QDX86279483"> <IDENTIFIERS> <PRIMARY_ID>SRX22257808</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279483</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310819"> <IDENTIFIERS> <PRIMARY_ID>SRS19310819</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279483/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257809" alias="QDX86279486"> <IDENTIFIERS> <PRIMARY_ID>SRX22257809</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279486</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310818"> <IDENTIFIERS> <PRIMARY_ID>SRS19310818</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279486/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257810" alias="QDX86279488"> <IDENTIFIERS> <PRIMARY_ID>SRX22257810</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279488</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310821"> <IDENTIFIERS> <PRIMARY_ID>SRS19310821</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279488/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257811" alias="QDX86279489"> <IDENTIFIERS> <PRIMARY_ID>SRX22257811</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279489</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310823"> <IDENTIFIERS> <PRIMARY_ID>SRS19310823</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279489/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257812" alias="QDX86279490"> <IDENTIFIERS> <PRIMARY_ID>SRX22257812</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279490</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310822"> <IDENTIFIERS> <PRIMARY_ID>SRS19310822</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279490/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257813" alias="QDX86279493"> <IDENTIFIERS> <PRIMARY_ID>SRX22257813</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279493</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310827"> <IDENTIFIERS> <PRIMARY_ID>SRS19310827</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279493/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257814" alias="QDX86279507"> <IDENTIFIERS> <PRIMARY_ID>SRX22257814</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279507</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310825"> <IDENTIFIERS> <PRIMARY_ID>SRS19310825</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279507/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257816" alias="QDX86279511"> <IDENTIFIERS> <PRIMARY_ID>SRX22257816</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279511</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310829"> <IDENTIFIERS> <PRIMARY_ID>SRS19310829</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279511/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257817" alias="QDX86279515"> <IDENTIFIERS> <PRIMARY_ID>SRX22257817</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279515</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310828"> <IDENTIFIERS> <PRIMARY_ID>SRS19310828</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279515/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257818" alias="QDX86279522"> <IDENTIFIERS> <PRIMARY_ID>SRX22257818</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279522</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310824"> <IDENTIFIERS> <PRIMARY_ID>SRS19310824</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279522/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257819" alias="QDX86279528"> <IDENTIFIERS> <PRIMARY_ID>SRX22257819</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279528</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310830"> <IDENTIFIERS> <PRIMARY_ID>SRS19310830</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279528/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257820" alias="QDX86279530"> <IDENTIFIERS> <PRIMARY_ID>SRX22257820</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279530</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310831"> <IDENTIFIERS> <PRIMARY_ID>SRS19310831</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279530/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257821" alias="QDX86279531"> <IDENTIFIERS> <PRIMARY_ID>SRX22257821</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279531</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310833"> <IDENTIFIERS> <PRIMARY_ID>SRS19310833</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86279531/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257822" alias="QDX86279533"> <IDENTIFIERS> <PRIMARY_ID>SRX22257822</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279533</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310832"> <IDENTIFIERS> <PRIMARY_ID>SRS19310832</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86279533/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310835"> <IDENTIFIERS> <PRIMARY_ID>SRS19310835</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OR-CDC-QDX86279545/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257827" alias="QDX86279547"> <IDENTIFIERS> <PRIMARY_ID>SRX22257827</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310846"> <IDENTIFIERS> <PRIMARY_ID>SRS19310846</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279586/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257834" alias="QDX86279587"> <IDENTIFIERS> <PRIMARY_ID>SRX22257834</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279587</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310845"> <IDENTIFIERS> <PRIMARY_ID>SRS19310845</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279587/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257835" alias="QDX86279590"> <IDENTIFIERS> <PRIMARY_ID>SRX22257835</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310859"> <IDENTIFIERS> <PRIMARY_ID>SRS19310859</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86356271/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257850" alias="QDX86356272"> <IDENTIFIERS> <PRIMARY_ID>SRX22257850</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356272</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310864"> <IDENTIFIERS> <PRIMARY_ID>SRS19310864</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86356272/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257851" alias="QDX86356273"> <IDENTIFIERS> <PRIMARY_ID>SRX22257851</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356273</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310863"> <IDENTIFIERS> <PRIMARY_ID>SRS19310863</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/VA-CDC-QDX86356273/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310876"> <IDENTIFIERS> <PRIMARY_ID>SRS19310876</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86356413/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257866" alias="QDX86356414"> <IDENTIFIERS> <PRIMARY_ID>SRX22257866</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356414</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310880"> <IDENTIFIERS> <PRIMARY_ID>SRS19310880</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86356414/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257867" alias="QDX86356415"> <IDENTIFIERS> <PRIMARY_ID>SRX22257867</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356415</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310878"> <IDENTIFIERS> <PRIMARY_ID>SRS19310878</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86356415/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257869" alias="QDX86356417"> <IDENTIFIERS> <PRIMARY_ID>SRX22257869</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356417</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310879"> <IDENTIFIERS> <PRIMARY_ID>SRS19310879</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/UT-CDC-QDX86356417/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257893" alias="QDX86408347"> <IDENTIFIERS> <PRIMARY_ID>SRX22257893</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408347</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310901"> <IDENTIFIERS> <PRIMARY_ID>SRS19310901</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408347/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408350/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257897" alias="QDX86408351"> <IDENTIFIERS> <PRIMARY_ID>SRX22257897</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408351</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310908"> <IDENTIFIERS> <PRIMARY_ID>SRS19310908</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408351/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257898" alias="QDX86408352"> <IDENTIFIERS> <PRIMARY_ID>SRX22257898</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408352</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310909"> <IDENTIFIERS> <PRIMARY_ID>SRS19310909</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408352/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257899" alias="QDX86408353"> <IDENTIFIERS> <PRIMARY_ID>SRX22257899</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408353</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310910"> <IDENTIFIERS> <PRIMARY_ID>SRS19310910</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408353/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257901" alias="QDX86408355"> <IDENTIFIERS> <PRIMARY_ID>SRX22257901</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408355</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310911"> <IDENTIFIERS> <PRIMARY_ID>SRS19310911</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408355/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257902" alias="QDX86408356"> <IDENTIFIERS> <PRIMARY_ID>SRX22257902</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408356</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310914"> <IDENTIFIERS> <PRIMARY_ID>SRS19310914</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408356/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310917"> <IDENTIFIERS> <PRIMARY_ID>SRS19310917</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408361/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257906" alias="QDX86408362"> <IDENTIFIERS> <PRIMARY_ID>SRX22257906</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408362</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310912"> <IDENTIFIERS> <PRIMARY_ID>SRS19310912</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408362/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257907" alias="QDX86408387"> <IDENTIFIERS> <PRIMARY_ID>SRX22257907</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408387</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310918"> <IDENTIFIERS> <PRIMARY_ID>SRS19310918</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KS-CDC-QDX86408387/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257908" alias="QDX86408388"> <IDENTIFIERS> <PRIMARY_ID>SRX22257908</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408388</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310927"> <IDENTIFIERS> <PRIMARY_ID>SRS19310927</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408388/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257909" alias="QDX86408390"> <IDENTIFIERS> <PRIMARY_ID>SRX22257909</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408390</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310919"> <IDENTIFIERS> <PRIMARY_ID>SRS19310919</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408390/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257910" alias="QDX86408393"> <IDENTIFIERS> <PRIMARY_ID>SRX22257910</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408393</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310920"> <IDENTIFIERS> <PRIMARY_ID>SRS19310920</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408393/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257911" alias="QDX86408395"> <IDENTIFIERS> <PRIMARY_ID>SRX22257911</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408395</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310922"> <IDENTIFIERS> <PRIMARY_ID>SRS19310922</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408395/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257912" alias="QDX86408396"> <IDENTIFIERS> <PRIMARY_ID>SRX22257912</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408396</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310921"> <IDENTIFIERS> <PRIMARY_ID>SRS19310921</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OK-CDC-QDX86408396/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257913" alias="QDX86408398"> <IDENTIFIERS> <PRIMARY_ID>SRX22257913</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408398</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310923"> <IDENTIFIERS> <PRIMARY_ID>SRS19310923</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408398/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257914" alias="QDX86408399"> <IDENTIFIERS> <PRIMARY_ID>SRX22257914</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408399</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310926"> <IDENTIFIERS> <PRIMARY_ID>SRS19310926</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86408399/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257915" alias="QDX86222641"> <IDENTIFIERS> <PRIMARY_ID>SRX22257915</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222641</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310924"> <IDENTIFIERS> <PRIMARY_ID>SRS19310924</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222641/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257916" alias="QDX86222644"> <IDENTIFIERS> <PRIMARY_ID>SRX22257916</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222644</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310925"> <IDENTIFIERS> <PRIMARY_ID>SRS19310925</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222644/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257917" alias="QDX86222650"> <IDENTIFIERS> <PRIMARY_ID>SRX22257917</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222650</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310930"> <IDENTIFIERS> <PRIMARY_ID>SRS19310930</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222650/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257918" alias="QDX86222652"> <IDENTIFIERS> <PRIMARY_ID>SRX22257918</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222652</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310931"> <IDENTIFIERS> <PRIMARY_ID>SRS19310931</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86222652/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257919" alias="QDX86222654"> <IDENTIFIERS> <PRIMARY_ID>SRX22257919</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222654</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310929"> <IDENTIFIERS> <PRIMARY_ID>SRS19310929</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86222654/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257920" alias="QDX86222658"> <IDENTIFIERS> <PRIMARY_ID>SRX22257920</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222658</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310928"> <IDENTIFIERS> <PRIMARY_ID>SRS19310928</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86222658/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257921" alias="QDX86222660"> <IDENTIFIERS> <PRIMARY_ID>SRX22257921</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222660</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310933"> <IDENTIFIERS> <PRIMARY_ID>SRS19310933</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86222660/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257922" alias="QDX86222688"> <IDENTIFIERS> <PRIMARY_ID>SRX22257922</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222688</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310934"> <IDENTIFIERS> <PRIMARY_ID>SRS19310934</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX86222688/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257923" alias="QDX86222690"> <IDENTIFIERS> <PRIMARY_ID>SRX22257923</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222690</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310932"> <IDENTIFIERS> <PRIMARY_ID>SRS19310932</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX86222690/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257924" alias="QDX86222695"> <IDENTIFIERS> <PRIMARY_ID>SRX22257924</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222695</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310935"> <IDENTIFIERS> <PRIMARY_ID>SRS19310935</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222695/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257925" alias="QDX86222696"> <IDENTIFIERS> <PRIMARY_ID>SRX22257925</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222696</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310937"> <IDENTIFIERS> <PRIMARY_ID>SRS19310937</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222696/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257926" alias="QDX86222697"> <IDENTIFIERS> <PRIMARY_ID>SRX22257926</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222697</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310936"> <IDENTIFIERS> <PRIMARY_ID>SRS19310936</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222697/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310940"> <IDENTIFIERS> <PRIMARY_ID>SRS19310940</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222701/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257930" alias="QDX86222704"> <IDENTIFIERS> <PRIMARY_ID>SRX22257930</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222704</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310941"> <IDENTIFIERS> <PRIMARY_ID>SRS19310941</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222704/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257931" alias="QDX86222706"> <IDENTIFIERS> <PRIMARY_ID>SRX22257931</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222706</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310939"> <IDENTIFIERS> <PRIMARY_ID>SRS19310939</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222706/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257932" alias="QDX86222708"> <IDENTIFIERS> <PRIMARY_ID>SRX22257932</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86222708</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310942"> <IDENTIFIERS> <PRIMARY_ID>SRS19310942</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86222708/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257933" alias="QDX86279383"> <IDENTIFIERS> <PRIMARY_ID>SRX22257933</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279383</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310944"> <IDENTIFIERS> <PRIMARY_ID>SRS19310944</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279383/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257934" alias="QDX86279384"> <IDENTIFIERS> <PRIMARY_ID>SRX22257934</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279384</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310945"> <IDENTIFIERS> <PRIMARY_ID>SRS19310945</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279384/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19310950"> <IDENTIFIERS> <PRIMARY_ID>SRS19310950</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279391/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22257939" alias="QDX86279392"> <IDENTIFIERS> <PRIMARY_ID>SRX22257939</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258005" alias="QDX86356555"> <IDENTIFIERS> <PRIMARY_ID>SRX22258005</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356555</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311018"> <IDENTIFIERS> <PRIMARY_ID>SRS19311018</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86356555/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258006" alias="QDX86356556"> <IDENTIFIERS> <PRIMARY_ID>SRX22258006</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356556</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311015"> <IDENTIFIERS> <PRIMARY_ID>SRS19311015</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86356556/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258008" alias="QDX86356558"> <IDENTIFIERS> <PRIMARY_ID>SRX22258008</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356558</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311019"> <IDENTIFIERS> <PRIMARY_ID>SRS19311019</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356558/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258009" alias="QDX86356559"> <IDENTIFIERS> <PRIMARY_ID>SRX22258009</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356559</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311023"> <IDENTIFIERS> <PRIMARY_ID>SRS19311023</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356559/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258010" alias="QDX86356561"> <IDENTIFIERS> <PRIMARY_ID>SRX22258010</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356561</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311020"> <IDENTIFIERS> <PRIMARY_ID>SRS19311020</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356561/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258011" alias="QDX86356562"> <IDENTIFIERS> <PRIMARY_ID>SRX22258011</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356562</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311022"> <IDENTIFIERS> <PRIMARY_ID>SRS19311022</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356562/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258012" alias="QDX86356564"> <IDENTIFIERS> <PRIMARY_ID>SRX22258012</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356564</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311021"> <IDENTIFIERS> <PRIMARY_ID>SRS19311021</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86356564/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258013" alias="QDX86356565"> <IDENTIFIERS> <PRIMARY_ID>SRX22258013</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356565</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311024"> <IDENTIFIERS> <PRIMARY_ID>SRS19311024</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86356565/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258014" alias="QDX86356566"> <IDENTIFIERS> <PRIMARY_ID>SRX22258014</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356566</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311028"> <IDENTIFIERS> <PRIMARY_ID>SRS19311028</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86356566/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258015" alias="QDX86356567"> <IDENTIFIERS> <PRIMARY_ID>SRX22258015</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356567</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311026"> <IDENTIFIERS> <PRIMARY_ID>SRS19311026</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX86356567/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311029"> <IDENTIFIERS> <PRIMARY_ID>SRS19311029</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86408328/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258019" alias="QDX86408329"> <IDENTIFIERS> <PRIMARY_ID>SRX22258019</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258021" alias="QDX86408332"> <IDENTIFIERS> <PRIMARY_ID>SRX22258021</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408332</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311033"> <IDENTIFIERS> <PRIMARY_ID>SRS19311033</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408332/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258022" alias="QDX86408333"> <IDENTIFIERS> <PRIMARY_ID>SRX22258022</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408333</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311034"> <IDENTIFIERS> <PRIMARY_ID>SRS19311034</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408333/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311035"> <IDENTIFIERS> <PRIMARY_ID>SRS19311035</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408338/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258026" alias="QDX86408339"> <IDENTIFIERS> <PRIMARY_ID>SRX22258026</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408339</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311032"> <IDENTIFIERS> <PRIMARY_ID>SRS19311032</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408339/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258027" alias="QDX86408546"> <IDENTIFIERS> <PRIMARY_ID>SRX22258027</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408546</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311036"> <IDENTIFIERS> <PRIMARY_ID>SRS19311036</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX86408546/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258028" alias="QDX86408547"> <IDENTIFIERS> <PRIMARY_ID>SRX22258028</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408547</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311039"> <IDENTIFIERS> <PRIMARY_ID>SRS19311039</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408547/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258029" alias="QDX86463873"> <IDENTIFIERS> <PRIMARY_ID>SRX22258029</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86463873</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311040"> <IDENTIFIERS> <PRIMARY_ID>SRS19311040</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86463873/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311042"> <IDENTIFIERS> <PRIMARY_ID>SRS19311042</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279405/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258035" alias="QDX86279406"> <IDENTIFIERS> <PRIMARY_ID>SRX22258035</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258037" alias="QDX86279408"> <IDENTIFIERS> <PRIMARY_ID>SRX22258037</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279408</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311047"> <IDENTIFIERS> <PRIMARY_ID>SRS19311047</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86279408/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311052"> <IDENTIFIERS> <PRIMARY_ID>SRS19311052</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279412/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258042" alias="QDX86279414"> <IDENTIFIERS> <PRIMARY_ID>SRX22258042</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279414</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311054"> <IDENTIFIERS> <PRIMARY_ID>SRS19311054</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86279414/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258043" alias="QDX86279415"> <IDENTIFIERS> <PRIMARY_ID>SRX22258043</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279415</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311053"> <IDENTIFIERS> <PRIMARY_ID>SRS19311053</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279415/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258045" alias="QDX86279418"> <IDENTIFIERS> <PRIMARY_ID>SRX22258045</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279418</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311055"> <IDENTIFIERS> <PRIMARY_ID>SRS19311055</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279418/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258053" alias="QDX86279426"> <IDENTIFIERS> <PRIMARY_ID>SRX22258053</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279426</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311065"> <IDENTIFIERS> <PRIMARY_ID>SRS19311065</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279426/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311068"> <IDENTIFIERS> <PRIMARY_ID>SRS19311068</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279430/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258058" alias="QDX86279431"> <IDENTIFIERS> <PRIMARY_ID>SRX22258058</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86279431</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311070"> <IDENTIFIERS> <PRIMARY_ID>SRS19311070</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86279431/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258059" alias="QDX86279552"> <IDENTIFIERS> <PRIMARY_ID>SRX22258059</PRIMARY_ID> <EXTERNAL_ID 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311178"> <IDENTIFIERS> <PRIMARY_ID>SRS19311178</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MA-CDC-QDX86356537/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258163" alias="QDX86356538"> <IDENTIFIERS> <PRIMARY_ID>SRX22258163</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258165" alias="QDX86356541"> <IDENTIFIERS> <PRIMARY_ID>SRX22258165</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356541</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311174"> <IDENTIFIERS> <PRIMARY_ID>SRS19311174</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MA-CDC-QDX86356541/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311179"> <IDENTIFIERS> <PRIMARY_ID>SRS19311179</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356546/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258170" alias="QDX86356547"> <IDENTIFIERS> <PRIMARY_ID>SRX22258170</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86356547</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311186"> <IDENTIFIERS> <PRIMARY_ID>SRS19311186</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86356547/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258171" alias="QDX86408481"> <IDENTIFIERS> <PRIMARY_ID>SRX22258171</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408481</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311181"> <IDENTIFIERS> <PRIMARY_ID>SRS19311181</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MA-CDC-QDX86408481/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258172" alias="QDX86408482"> <IDENTIFIERS> <PRIMARY_ID>SRX22258172</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408482</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311182"> <IDENTIFIERS> <PRIMARY_ID>SRS19311182</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MA-CDC-QDX86408482/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258173" alias="QDX86408518"> <IDENTIFIERS> <PRIMARY_ID>SRX22258173</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408518</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311185"> <IDENTIFIERS> <PRIMARY_ID>SRS19311185</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408518/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258175" alias="QDX86408520"> <IDENTIFIERS> <PRIMARY_ID>SRX22258175</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408520</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311183"> <IDENTIFIERS> <PRIMARY_ID>SRS19311183</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408520/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311184"> <IDENTIFIERS> <PRIMARY_ID>SRS19311184</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX86408523/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258179" alias="QDX86408524"> <IDENTIFIERS> <PRIMARY_ID>SRX22258179</PRIMARY_ID> <EXTERNAL_ID 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accession="SRX22258180" alias="QDX86408525"> <IDENTIFIERS> <PRIMARY_ID>SRX22258180</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408525</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311193"> <IDENTIFIERS> <PRIMARY_ID>SRS19311193</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408525/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258181" alias="QDX86408526"> <IDENTIFIERS> <PRIMARY_ID>SRX22258181</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408526</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311189"> <IDENTIFIERS> <PRIMARY_ID>SRS19311189</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408526/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258184" alias="QDX86408529"> <IDENTIFIERS> <PRIMARY_ID>SRX22258184</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408529</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311196"> <IDENTIFIERS> <PRIMARY_ID>SRS19311196</PRIMARY_ID> <EXTERNAL_ID 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<DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311197"> <IDENTIFIERS> <PRIMARY_ID>SRS19311197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86408530/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258186" alias="QDX86408532"> <IDENTIFIERS> <PRIMARY_ID>SRX22258186</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408532</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311192"> <IDENTIFIERS> <PRIMARY_ID>SRS19311192</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86408532/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258187" alias="QDX86408533"> <IDENTIFIERS> <PRIMARY_ID>SRX22258187</PRIMARY_ID> <EXTERNAL_ID 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258189" alias="QDX86408535"> <IDENTIFIERS> <PRIMARY_ID>SRX22258189</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408535</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311199"> <IDENTIFIERS> <PRIMARY_ID>SRS19311199</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86408535/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311208"> <IDENTIFIERS> <PRIMARY_ID>SRS19311208</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86408541/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258195" alias="QDX86408542"> <IDENTIFIERS> <PRIMARY_ID>SRX22258195</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408542</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311205"> <IDENTIFIERS> <PRIMARY_ID>SRS19311205</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX86408542/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258196" alias="QDX86408543"> <IDENTIFIERS> <PRIMARY_ID>SRX22258196</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408543</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311206"> <IDENTIFIERS> <PRIMARY_ID>SRS19311206</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86408543/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258197" alias="QDX86408544"> <IDENTIFIERS> <PRIMARY_ID>SRX22258197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408544</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311209"> <IDENTIFIERS> <PRIMARY_ID>SRS19311209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408544/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22258198" alias="QDX86408545"> <IDENTIFIERS> <PRIMARY_ID>SRX22258198</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86408545</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19311207"> <IDENTIFIERS> <PRIMARY_ID>SRS19311207</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX86408545/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL> LDT, ARTIC v4.1.2 primer on Novaseq </LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> </EXPERIMENT_SET>