SRX645416 GSM1426254 SRP044049 SRS653582 GSM1426254 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426254 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426254 gds 301426254 GEO Accession GSM1426254 SRX645417 GSM1426255 SRP044049 SRS653583 GSM1426255 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426255 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426255 gds 301426255 GEO Accession GSM1426255 SRX645418 GSM1426256 SRP044049 SRS653584 GSM1426256 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426256 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426256 gds 301426256 GEO Accession GSM1426256 SRX645419 GSM1426257 SRP044049 SRS653585 GSM1426257 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426257 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426257 gds 301426257 GEO Accession GSM1426257 SRX645420 GSM1426258 SRP044049 SRS653586 GSM1426258 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426258 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426258 gds 301426258 GEO Accession GSM1426258 SRX645421 GSM1426259 SRP044049 SRS653588 GSM1426259 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426259 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426259 gds 301426259 GEO Accession GSM1426259 SRX645422 GSM1426260 SRP044049 SRS653587 GSM1426260 OTHER GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426260 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426260 gds 301426260 GEO Accession GSM1426260 SRX645423 GSM1426261 SRP044049 SRS653589 GSM1426261 FAIRE-seq GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426261 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426261 gds 301426261 GEO Accession GSM1426261 SRX645424 GSM1426262 SRP044049 SRS653590 GSM1426262 FAIRE-seq GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426262 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426262 gds 301426262 GEO Accession GSM1426262 SRX645425 GSM1426263 SRP044049 SRS653591 GSM1426263 FAIRE-seq GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426263 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426263 gds 301426263 GEO Accession GSM1426263 SRX645426 GSM1426264 SRP044049 SRS653592 GSM1426264 FAIRE-seq GENOMIC other ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426264 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426264 gds 301426264 GEO Accession GSM1426264 SRX645427 GSM1426265 SRP044049 SRS653593 GSM1426265 ChIP-Seq GENOMIC ChIP ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426265 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426265 gds 301426265 GEO Accession GSM1426265 SRX645428 GSM1426266 SRP044049 SRS653594 GSM1426266 ChIP-Seq GENOMIC ChIP ATAC-Seq - Nuclei were extracted from 10 eye-antennal discs . FAIRE-Seq - 150 Head complexes were first dissected, fixed and lysed. 200 eye-antennal discs were the uncrosslinked and sonicated, phenol chloroform extraction was used for DNA purification. ChIP-Seq - 750 Head complexes were first fixed, 1000 eye-antennal discs were then dissected and sonicated. Sonicated chromatin was then immunoprecipitated and purified using magnetic beads ATAC-Seq libraries were prepared using a simple PCR reaction with adapters based against the transpon sequence. FAIRE-Seq and ChIP-Seq libraries were prepared using standard Illumina Protocols. Illumina HiSeq 2000 GEO Sample GSM1426266 http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1426266 gds 301426266 GEO Accession GSM1426266