<?xml version="1.0" encoding="UTF-8"?>
<RUN_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <RUN accession="SRR1506769" center_name="BCCAGSC" alias="A44566_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506769</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44566_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646005">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44566-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506770" center_name="BCCAGSC" alias="A44560_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506770</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44560_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645964">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44560-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506771" center_name="BCCAGSC" alias="A44604_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506771</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44604_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645968">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44604-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506772" center_name="BCCAGSC" alias="A44551_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506772</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44551_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646012">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44551-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506773" center_name="BCCAGSC" alias="A44580_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506773</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44580_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645995">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44580-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506774" center_name="BCCAGSC" alias="A44569_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506774</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44569_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646023">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44569-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506775" center_name="BCCAGSC" alias="A44581_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506775</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44581_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645986">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44581-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506776" center_name="BCCAGSC" alias="A44564_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506776</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44564_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646019">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44564-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506777" center_name="BCCAGSC" alias="A44628_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506777</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44628_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645973">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44628-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506778" center_name="BCCAGSC" alias="A44557_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506778</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44557_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646003">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44557-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506779" center_name="BCCAGSC" alias="A44634_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506779</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44634_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646021">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44634-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506780" center_name="BCCAGSC" alias="A44578_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506780</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44578_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646000">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44578-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506781" center_name="BCCAGSC" alias="A44594_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506781</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44594_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645941">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44594-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506782" center_name="BCCAGSC" alias="A44593_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506782</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44593_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646001">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44593-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506783" center_name="BCCAGSC" alias="A44626_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506783</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44626_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645977">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44626-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506784" center_name="BCCAGSC" alias="A44570_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506784</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44570_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645989">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44570-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506785" center_name="BCCAGSC" alias="A44583_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506785</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44583_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645979">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44583-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506786" center_name="BCCAGSC" alias="A44574_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506786</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44574_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645966">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44574-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506787" center_name="BCCAGSC" alias="A44596_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506787</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44596_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646026">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44596-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506788" center_name="BCCAGSC" alias="A44575_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506788</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44575_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646015">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44575-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506789" center_name="BCCAGSC" alias="A44623_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506789</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44623_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646011">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44623-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506790" center_name="BCCAGSC" alias="A44627_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506790</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44627_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645998">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44627-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506791" center_name="BCCAGSC" alias="A44614_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506791</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44614_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645988">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44614-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506792" center_name="BCCAGSC" alias="A44632_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506792</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44632_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645981">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44632-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506793" center_name="BCCAGSC" alias="A44550_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506793</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44550_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645996">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44550-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506794" center_name="BCCAGSC" alias="A44546_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506794</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44546_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646024">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44546-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506795" center_name="BCCAGSC" alias="A44589_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506795</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44589_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645971">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44589-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506796" center_name="BCCAGSC" alias="A44636_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506796</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44636_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645990">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44636-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506797" center_name="BCCAGSC" alias="A44571_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506797</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44571_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646029">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44571-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506798" center_name="BCCAGSC" alias="A44609_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506798</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44609_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646008">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44609-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506799" center_name="BCCAGSC" alias="A44588_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506799</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44588_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645946">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44588-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506800" center_name="BCCAGSC" alias="A44611_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506800</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44611_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646016">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44611-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506801" center_name="BCCAGSC" alias="A44617_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506801</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44617_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646014">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44617-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506802" center_name="BCCAGSC" alias="A44579_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506802</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44579_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645985">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44579-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506803" center_name="BCCAGSC" alias="A44563_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506803</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44563_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646006">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44563-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506804" center_name="BCCAGSC" alias="A44576_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506804</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44576_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645940">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44576-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506805" center_name="BCCAGSC" alias="A44561_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506805</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44561_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645975">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44561-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506806" center_name="BCCAGSC" alias="A44592_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506806</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44592_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645948">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44592-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506807" center_name="BCCAGSC" alias="A44616_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506807</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44616_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646018">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44616-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506808" center_name="BCCAGSC" alias="A44602_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506808</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44602_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645993">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44602-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506809" center_name="BCCAGSC" alias="A44619_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506809</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44619_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646013">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44619-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506810" center_name="BCCAGSC" alias="A44585_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506810</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44585_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645957">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44585-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506811" center_name="BCCAGSC" alias="A44582_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506811</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44582_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646009">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44582-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506812" center_name="BCCAGSC" alias="A44559_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506812</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44559_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646004">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44559-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506813" center_name="BCCAGSC" alias="A44613_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506813</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44613_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645969">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44613-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506814" center_name="BCCAGSC" alias="A44567_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506814</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44567_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645983">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44567-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506815" center_name="BCCAGSC" alias="A44548_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506815</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44548_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646002">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44548-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506816" center_name="BCCAGSC" alias="A44606_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506816</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44606_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645942">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44606-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506817" center_name="BCCAGSC" alias="A44554_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506817</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44554_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645959">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44554-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506818" center_name="BCCAGSC" alias="A44601_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506818</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44601_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645967">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44601-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506819" center_name="BCCAGSC" alias="A44629_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506819</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44629_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645984">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44629-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506820" center_name="BCCAGSC" alias="A44586_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506820</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44586_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646028">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44586-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506821" center_name="BCCAGSC" alias="A44621_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506821</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44621_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645944">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44621-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506822" center_name="BCCAGSC" alias="A44590_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506822</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44590_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645955">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44590-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506823" center_name="BCCAGSC" alias="A44597_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506823</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44597_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645950">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44597-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506824" center_name="BCCAGSC" alias="A44565_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506824</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44565_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645970">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44565-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506825" center_name="BCCAGSC" alias="A44635_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506825</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44635_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645992">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44635-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506826" center_name="BCCAGSC" alias="A44607_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506826</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44607_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645953">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44607-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506827" center_name="BCCAGSC" alias="A44603_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506827</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44603_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645960">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44603-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506828" center_name="BCCAGSC" alias="A44622_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506828</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44622_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645976">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44622-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506829" center_name="BCCAGSC" alias="A44555_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506829</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44555_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645956">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44555-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506830" center_name="BCCAGSC" alias="A44612_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506830</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44612_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645987">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44612-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506831" center_name="BCCAGSC" alias="A44608_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506831</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44608_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646017">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44608-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506832" center_name="BCCAGSC" alias="A44577_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506832</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44577_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646020">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44577-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506833" center_name="BCCAGSC" alias="A44618_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506833</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44618_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645951">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44618-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506834" center_name="BCCAGSC" alias="A44553_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506834</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44553_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645965">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44553-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506835" center_name="BCCAGSC" alias="A44605_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506835</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44605_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645945">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44605-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506836" center_name="BCCAGSC" alias="A44587_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506836</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44587_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645974">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44587-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506837" center_name="BCCAGSC" alias="A44630_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506837</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44630_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645943">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44630-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506838" center_name="BCCAGSC" alias="A44625_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506838</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44625_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645999">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44625-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506839" center_name="BCCAGSC" alias="A44558_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506839</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44558_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646022">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44558-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506840" center_name="BCCAGSC" alias="A44549_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506840</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44549_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646030">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44549-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506841" center_name="BCCAGSC" alias="A44573_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506841</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44573_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645954">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44573-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506842" center_name="BCCAGSC" alias="A44552_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506842</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44552_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645994">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44552-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506843" center_name="BCCAGSC" alias="A44631_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506843</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44631_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646007">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44631-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506844" center_name="BCCAGSC" alias="A44610_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506844</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44610_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645949">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44610-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506845" center_name="BCCAGSC" alias="A44599_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506845</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44599_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645972">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44599-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506846" center_name="BCCAGSC" alias="A44584_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506846</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44584_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645947">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44584-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506847" center_name="BCCAGSC" alias="A44624_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506847</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44624_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646027">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44624-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506848" center_name="BCCAGSC" alias="A44598_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506848</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44598_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645952">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44598-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140992</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:16Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506849" center_name="BCCAGSC" alias="A44562_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506849</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44562_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646010">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44562-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506850" center_name="BCCAGSC" alias="A44572_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506850</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44572_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645991">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44572-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506851" center_name="BCCAGSC" alias="A44556_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506851</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44556_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645958">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44556-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506852" center_name="BCCAGSC" alias="A44633_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506852</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44633_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645963">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44633-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506853" center_name="BCCAGSC" alias="A44568_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506853</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44568_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX646025">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44568-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506854" center_name="BCCAGSC" alias="A44545_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506854</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44545_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645961">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44545-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140889</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-01T18:01:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506855" center_name="BCCAGSC" alias="A44591_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506855</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44591_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645997">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44591-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506856" center_name="BCCAGSC" alias="A44547_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506856</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44547_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645978">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44547-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506857" center_name="BCCAGSC" alias="A44595_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506857</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44595_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645980">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44595-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506858" center_name="BCCAGSC" alias="A44600_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506858</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44600_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645982">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44600-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140993</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:05:21Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
  <RUN accession="SRR1506859" center_name="BCCAGSC" alias="A44620_1_lane_dupsFlagged.bam">
    <IDENTIFIERS>
      <PRIMARY_ID>SRR1506859</PRIMARY_ID>
      <SUBMITTER_ID namespace="BCCAGSC">A44620_1_lane_dupsFlagged.bam</SUBMITTER_ID>
    </IDENTIFIERS>
    <EXPERIMENT_REF accession="SRX645962">
      <IDENTIFIERS>
        <SUBMITTER_ID namespace="BCCAGSC">A44620-1</SUBMITTER_ID>
      </IDENTIFIERS>
    </EXPERIMENT_REF>
    <SPOT_DESCRIPTOR>
      <SPOT_DECODE_SPEC>
        <SPOT_LENGTH>209</SPOT_LENGTH>
        <READ_SPEC>
          <READ_INDEX>0</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Forward</READ_TYPE>
          <BASE_COORD>1</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>1</READ_INDEX>
          <READ_CLASS>Technical Read</READ_CLASS>
          <READ_TYPE>BarCode</READ_TYPE>
          <BASE_COORD>102</BASE_COORD>
        </READ_SPEC>
        <READ_SPEC>
          <READ_INDEX>2</READ_INDEX>
          <READ_CLASS>Application Read</READ_CLASS>
          <READ_TYPE>Reverse</READ_TYPE>
          <BASE_COORD>109</BASE_COORD>
        </READ_SPEC>
      </SPOT_DECODE_SPEC>
    </SPOT_DESCRIPTOR>
    <PROCESSING>
      <PIPELINE>
        <PIPE_SECTION section_name="BASE_CALLS">
          <STEP_INDEX>1</STEP_INDEX>
          <PREV_STEP_INDEX>NIL</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
        <PIPE_SECTION section_name="QUALITY_SCORES">
          <STEP_INDEX>2</STEP_INDEX>
          <PREV_STEP_INDEX>1</PREV_STEP_INDEX>
          <PROGRAM>Illumina RTA</PROGRAM>
          <VERSION>1.17.21.3</VERSION>
        </PIPE_SECTION>
      </PIPELINE>
    </PROCESSING>
    <RUN_ATTRIBUTES>
      <RUN_ATTRIBUTE>
        <TAG>assembly</TAG>
        <VALUE>GRCh37-lite</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>RUN</TAG>
        <VALUE>140981</VALUE>
      </RUN_ATTRIBUTE>
      <RUN_ATTRIBUTE>
        <TAG>SEQUENCING_DATE</TAG>
        <VALUE>2014-04-03T22:01:35Z</VALUE>
      </RUN_ATTRIBUTE>
    </RUN_ATTRIBUTES>
  </RUN>
</RUN_SET>
