SRX647459 GSM1429694 GSM1429694: p27 KO Empty vector R1; Mus musculus; RNA-Seq SRP044124 SRS654747 GSM1429694 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429694 gds 301429694 GEO Accession GSM1429694 SRX647460 GSM1429695 GSM1429695: p27 KO BCR-ABL R2; Mus musculus; RNA-Seq SRP044124 SRS654748 GSM1429695 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429695 gds 301429695 GEO Accession GSM1429695 SRX647461 GSM1429696 GSM1429696: p27 KO Empty vector R3; Mus musculus; RNA-Seq SRP044124 SRS654749 GSM1429696 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429696 gds 301429696 GEO Accession GSM1429696 SRX647462 GSM1429697 GSM1429697: p27 KO BCR-ABL R4; Mus musculus; RNA-Seq SRP044124 SRS654750 GSM1429697 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429697 gds 301429697 GEO Accession GSM1429697 SRX647463 GSM1429698 GSM1429698: p27 Ck- Empty vector R5; Mus musculus; RNA-Seq SRP044124 SRS654751 GSM1429698 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429698 gds 301429698 GEO Accession GSM1429698 SRX647464 GSM1429699 GSM1429699: p27 CK- BCR-ABL R6; Mus musculus; RNA-Seq SRP044124 SRS654752 GSM1429699 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429699 gds 301429699 GEO Accession GSM1429699 SRX647465 GSM1429700 GSM1429700: p27 Ck- Empty vector R9; Mus musculus; RNA-Seq SRP044124 SRS654753 GSM1429700 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429700 gds 301429700 GEO Accession GSM1429700 SRX647466 GSM1429701 GSM1429701: p27 CK- BCR-ABL R10; Mus musculus; RNA-Seq SRP044124 SRS654754 GSM1429701 RNA-Seq TRANSCRIPTOMIC cDNA RNA-seq libraries were constructed using the TruSeq protocol (Illumina). Poly(A)+ RNA was isolated using oligo-dT bound to magnetic beads. Poly(A)+ RNA was then chemically fragmented. RNA fragments were converted to double stranded cDNA using random hexamer priming. Fragment ends were treated to remove overhanging nucleotides and then a single “A” was added to the 3’ end of each strand to facilitate ligation. Illumina adaptors with barcode sequences was ligated to the fragments. The resulting library was then amplified using polymerase chain reaction with a limited number of round. Unincorporated nucleotides and adaptor dimers were removed using AMPure XP beads (Agencourt). Libraries were combined for multiplexing and sequenced on a HiSeq 2000 sequencer (Illumina). Base call data was assembled into fastq files using the CASAVA suite (Illumina). Illumina Genome Analyzer http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1429701 gds 301429701 GEO Accession GSM1429701