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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510926"> <IDENTIFIERS> <PRIMARY_ID>SRS19510926</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86945971/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498055" alias="QDX86945972"> <IDENTIFIERS> 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namespace="CDC-OAMD">QDX86945989</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510935"> <IDENTIFIERS> <PRIMARY_ID>SRS19510935</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86945989/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498064" alias="QDX86993411"> <IDENTIFIERS> <PRIMARY_ID>SRX22498064</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993411</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510936"> <IDENTIFIERS> <PRIMARY_ID>SRS19510936</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993411/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510943"> <IDENTIFIERS> <PRIMARY_ID>SRS19510943</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993426/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498072" alias="QDX86993428"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498073" alias="QDX86993433"> <IDENTIFIERS> <PRIMARY_ID>SRX22498073</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993433</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510945"> <IDENTIFIERS> <PRIMARY_ID>SRS19510945</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993433/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510951"> <IDENTIFIERS> <PRIMARY_ID>SRS19510951</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993442/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498080" alias="QDX86993445"> <IDENTIFIERS> <PRIMARY_ID>SRX22498080</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993445</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510952"> <IDENTIFIERS> <PRIMARY_ID>SRS19510952</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993445/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498133" alias="QDX86993340"> <IDENTIFIERS> <PRIMARY_ID>SRX22498133</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993340</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511005"> <IDENTIFIERS> <PRIMARY_ID>SRS19511005</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993340/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511011"> <IDENTIFIERS> <PRIMARY_ID>SRS19511011</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993351/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498140" alias="QDX86993352"> <IDENTIFIERS> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498143" alias="QDX86993357"> <IDENTIFIERS> <PRIMARY_ID>SRX22498143</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993357</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511015"> <IDENTIFIERS> <PRIMARY_ID>SRS19511015</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86993357/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511020"> <IDENTIFIERS> <PRIMARY_ID>SRS19511020</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048279/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498148" alias="QDX87048280"> <IDENTIFIERS> <PRIMARY_ID>SRX22498148</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048280</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511019"> <IDENTIFIERS> <PRIMARY_ID>SRS19511019</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048280/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498150" alias="QDX87048282"> <IDENTIFIERS> <PRIMARY_ID>SRX22498150</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048282</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511022"> <IDENTIFIERS> <PRIMARY_ID>SRS19511022</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048282/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498151" alias="QDX87048285"> <IDENTIFIERS> <PRIMARY_ID>SRX22498151</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048285</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511023"> <IDENTIFIERS> <PRIMARY_ID>SRS19511023</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX87048285/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498153" alias="QDX87048288"> <IDENTIFIERS> <PRIMARY_ID>SRX22498153</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048288</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511026"> <IDENTIFIERS> <PRIMARY_ID>SRS19511026</PRIMARY_ID> <EXTERNAL_ID 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<SAMPLE_DESCRIPTOR accession="SRS19511025"> <IDENTIFIERS> <PRIMARY_ID>SRS19511025</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048290/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498155" alias="QDX87048292"> <IDENTIFIERS> <PRIMARY_ID>SRX22498155</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048292</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511028"> <IDENTIFIERS> <PRIMARY_ID>SRS19511028</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048293/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498157" alias="QDX87048294"> <IDENTIFIERS> <PRIMARY_ID>SRX22498157</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048294</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511029"> <IDENTIFIERS> <PRIMARY_ID>SRS19511029</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048294/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498158" alias="QDX87048295"> <IDENTIFIERS> <PRIMARY_ID>SRX22498158</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048295</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511030"> <IDENTIFIERS> <PRIMARY_ID>SRS19511030</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048295/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498159" alias="QDX87048296"> <IDENTIFIERS> <PRIMARY_ID>SRX22498159</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048296</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511032"> <IDENTIFIERS> <PRIMARY_ID>SRS19511032</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048296/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498160" alias="QDX87048298"> <IDENTIFIERS> <PRIMARY_ID>SRX22498160</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048298</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511031"> <IDENTIFIERS> <PRIMARY_ID>SRS19511031</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048298/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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namespace="CDC-OAMD">QDX87048304</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511037"> <IDENTIFIERS> <PRIMARY_ID>SRS19511037</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048304/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498175" alias="QDX86993361"> <IDENTIFIERS> <PRIMARY_ID>SRX22498175</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993361</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511047"> <IDENTIFIERS> <PRIMARY_ID>SRS19511047</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993361/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511052"> <IDENTIFIERS> <PRIMARY_ID>SRS19511052</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86993369/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498182" alias="QDX86993370"> <IDENTIFIERS> <PRIMARY_ID>SRX22498182</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993370</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511054"> <IDENTIFIERS> <PRIMARY_ID>SRS19511054</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993370/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498183" alias="QDX86993371"> <IDENTIFIERS> <PRIMARY_ID>SRX22498183</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993371</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511055"> <IDENTIFIERS> <PRIMARY_ID>SRS19511055</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993371/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498184" alias="QDX86993372"> <IDENTIFIERS> <PRIMARY_ID>SRX22498184</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993372</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511056"> <IDENTIFIERS> <PRIMARY_ID>SRS19511056</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993372/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498185" alias="QDX86993373"> <IDENTIFIERS> <PRIMARY_ID>SRX22498185</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993373</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511057"> <IDENTIFIERS> <PRIMARY_ID>SRS19511057</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993373/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511062"> <IDENTIFIERS> <PRIMARY_ID>SRS19511062</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993386/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498191" alias="QDX86993387"> <IDENTIFIERS> <PRIMARY_ID>SRX22498191</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993387</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511063"> <IDENTIFIERS> <PRIMARY_ID>SRS19511063</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993387/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498192" alias="QDX86993388"> <IDENTIFIERS> <PRIMARY_ID>SRX22498192</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993388</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511064"> <IDENTIFIERS> <PRIMARY_ID>SRS19511064</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993388/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498194" alias="QDX86993391"> <IDENTIFIERS> <PRIMARY_ID>SRX22498194</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993391</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511066"> <IDENTIFIERS> <PRIMARY_ID>SRS19511066</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993391/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993393/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498197" alias="QDX86993395"> <IDENTIFIERS> <PRIMARY_ID>SRX22498197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993395</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511069"> <IDENTIFIERS> <PRIMARY_ID>SRS19511069</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993395/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498198" alias="QDX86993397"> <IDENTIFIERS> <PRIMARY_ID>SRX22498198</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993397</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511070"> <IDENTIFIERS> <PRIMARY_ID>SRS19511070</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993397/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498199" alias="QDX86993401"> <IDENTIFIERS> <PRIMARY_ID>SRX22498199</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993401</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511072"> <IDENTIFIERS> <PRIMARY_ID>SRS19511072</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993401/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498200" alias="QDX86993404"> <IDENTIFIERS> <PRIMARY_ID>SRX22498200</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993404</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511071"> <IDENTIFIERS> <PRIMARY_ID>SRS19511071</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993404/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498201" alias="QDX86993405"> <IDENTIFIERS> <PRIMARY_ID>SRX22498201</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993405</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511073"> <IDENTIFIERS> <PRIMARY_ID>SRS19511073</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993405/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498202" alias="QDX86993409"> <IDENTIFIERS> <PRIMARY_ID>SRX22498202</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993409</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511074"> <IDENTIFIERS> <PRIMARY_ID>SRS19511074</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993409/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498203" alias="QDX87048318"> <IDENTIFIERS> <PRIMARY_ID>SRX22498203</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048318</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511075"> <IDENTIFIERS> <PRIMARY_ID>SRS19511075</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048318/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048319/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498205" alias="QDX87048320"> <IDENTIFIERS> <PRIMARY_ID>SRX22498205</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048320</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511077"> <IDENTIFIERS> <PRIMARY_ID>SRS19511077</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048320/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498206" alias="QDX87048322"> <IDENTIFIERS> <PRIMARY_ID>SRX22498206</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048322</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511078"> <IDENTIFIERS> <PRIMARY_ID>SRS19511078</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX87048322/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498207" alias="QDX87048323"> <IDENTIFIERS> <PRIMARY_ID>SRX22498207</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048323</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511079"> <IDENTIFIERS> <PRIMARY_ID>SRS19511079</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048323/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498208" alias="QDX87048324"> <IDENTIFIERS> <PRIMARY_ID>SRX22498208</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048324</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511080"> <IDENTIFIERS> <PRIMARY_ID>SRS19511080</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX87048324/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498209" alias="QDX87048328"> <IDENTIFIERS> <PRIMARY_ID>SRX22498209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048328</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511081"> <IDENTIFIERS> <PRIMARY_ID>SRS19511081</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX87048328/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498210" alias="QDX87048333"> <IDENTIFIERS> <PRIMARY_ID>SRX22498210</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048333</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511082"> <IDENTIFIERS> <PRIMARY_ID>SRS19511082</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX87048333/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498211" alias="QDX87048334"> <IDENTIFIERS> <PRIMARY_ID>SRX22498211</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048334</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511083"> <IDENTIFIERS> <PRIMARY_ID>SRS19511083</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX87048334/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498213" alias="QDX87048342"> <IDENTIFIERS> <PRIMARY_ID>SRX22498213</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048342</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511085"> <IDENTIFIERS> <PRIMARY_ID>SRS19511085</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX87048342/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498214" alias="QDX87048345"> <IDENTIFIERS> <PRIMARY_ID>SRX22498214</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048345</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511086"> <IDENTIFIERS> <PRIMARY_ID>SRS19511086</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX87048345/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498215" alias="QDX87048346"> <IDENTIFIERS> <PRIMARY_ID>SRX22498215</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048346</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511087"> <IDENTIFIERS> <PRIMARY_ID>SRS19511087</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048346/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498216" alias="QDX87048348"> <IDENTIFIERS> <PRIMARY_ID>SRX22498216</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048348</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511088"> <IDENTIFIERS> <PRIMARY_ID>SRS19511088</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048348/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498217" alias="QDX87048349"> <IDENTIFIERS> <PRIMARY_ID>SRX22498217</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048349</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511089"> <IDENTIFIERS> <PRIMARY_ID>SRS19511089</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX87048349/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498218" alias="QDX87048351"> <IDENTIFIERS> <PRIMARY_ID>SRX22498218</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048351</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511090"> <IDENTIFIERS> <PRIMARY_ID>SRS19511090</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048351/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498219" alias="QDX87048352"> <IDENTIFIERS> <PRIMARY_ID>SRX22498219</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048352</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511091"> <IDENTIFIERS> <PRIMARY_ID>SRS19511091</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048352/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498220" alias="QDX87048353"> <IDENTIFIERS> <PRIMARY_ID>SRX22498220</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048353</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511092"> <IDENTIFIERS> <PRIMARY_ID>SRS19511092</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048353/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498221" alias="QDX87048354"> <IDENTIFIERS> <PRIMARY_ID>SRX22498221</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048354</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511093"> <IDENTIFIERS> <PRIMARY_ID>SRS19511093</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048354/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498222" alias="QDX87048355"> <IDENTIFIERS> <PRIMARY_ID>SRX22498222</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048355</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511095"> <IDENTIFIERS> <PRIMARY_ID>SRS19511095</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX87048355/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498223" alias="QDX87048357"> <IDENTIFIERS> <PRIMARY_ID>SRX22498223</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048357</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511094"> <IDENTIFIERS> <PRIMARY_ID>SRS19511094</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/OH-CDC-QDX87048357/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498224" alias="QDX87048360"> <IDENTIFIERS> <PRIMARY_ID>SRX22498224</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048360</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511096"> <IDENTIFIERS> <PRIMARY_ID>SRS19511096</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX87048360/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498225" alias="QDX87048361"> <IDENTIFIERS> <PRIMARY_ID>SRX22498225</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048361</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511097"> <IDENTIFIERS> <PRIMARY_ID>SRS19511097</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX87048361/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498226" alias="QDX87048362"> <IDENTIFIERS> <PRIMARY_ID>SRX22498226</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048362</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511098"> <IDENTIFIERS> <PRIMARY_ID>SRS19511098</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX87048362/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498227" alias="QDX87048365"> <IDENTIFIERS> <PRIMARY_ID>SRX22498227</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048365</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511100"> <IDENTIFIERS> <PRIMARY_ID>SRS19511100</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MI-CDC-QDX87048365/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498228" alias="QDX87102448"> <IDENTIFIERS> <PRIMARY_ID>SRX22498228</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87102448</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511099"> <IDENTIFIERS> <PRIMARY_ID>SRS19511099</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX87102448/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498229" alias="QDX87155405"> <IDENTIFIERS> <PRIMARY_ID>SRX22498229</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87155405</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511101"> <IDENTIFIERS> <PRIMARY_ID>SRS19511101</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87155405/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498230" alias="QDX87155407"> <IDENTIFIERS> <PRIMARY_ID>SRX22498230</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87155407</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511102"> <IDENTIFIERS> <PRIMARY_ID>SRS19511102</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87155407/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> </EXPERIMENT

SRX22497952 QDX86906321 <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510824"> <IDENTIFIERS> <PRIMARY_ID>SRS19510824</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906321/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497953" alias="QDX86906323"> <IDENTIFIERS> <PRIMARY_ID>SRX22497953</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906323</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510825"> <IDENTIFIERS> <PRIMARY_ID>SRS19510825</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906323/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497954" alias="QDX86906324"> <IDENTIFIERS> <PRIMARY_ID>SRX22497954</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906324</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510826"> <IDENTIFIERS> <PRIMARY_ID>SRS19510826</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906324/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497955" alias="QDX86906325"> <IDENTIFIERS> <PRIMARY_ID>SRX22497955</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906325</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510827"> <IDENTIFIERS> <PRIMARY_ID>SRS19510827</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906325/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497956" alias="QDX86906326"> <IDENTIFIERS> <PRIMARY_ID>SRX22497956</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906326</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510828"> <IDENTIFIERS> <PRIMARY_ID>SRS19510828</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906326/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497957" alias="QDX86906327"> <IDENTIFIERS> <PRIMARY_ID>SRX22497957</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906327</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510829"> <IDENTIFIERS> <PRIMARY_ID>SRS19510829</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CO-CDC-QDX86906327/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497958" alias="QDX86906342"> <IDENTIFIERS> <PRIMARY_ID>SRX22497958</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906342</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510830"> <IDENTIFIERS> <PRIMARY_ID>SRS19510830</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86906342/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497959" alias="QDX86906344"> <IDENTIFIERS> <PRIMARY_ID>SRX22497959</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906344</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510831"> <IDENTIFIERS> <PRIMARY_ID>SRS19510831</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KS-CDC-QDX86906344/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497960" alias="QDX86906347"> <IDENTIFIERS> <PRIMARY_ID>SRX22497960</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906347</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510832"> <IDENTIFIERS> <PRIMARY_ID>SRS19510832</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/AR-CDC-QDX86906347/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497961" alias="QDX86906417"> <IDENTIFIERS> <PRIMARY_ID>SRX22497961</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906417</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510833"> <IDENTIFIERS> <PRIMARY_ID>SRS19510833</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MN-CDC-QDX86906417/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497962" alias="QDX86906418"> <IDENTIFIERS> <PRIMARY_ID>SRX22497962</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906418</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510834"> <IDENTIFIERS> <PRIMARY_ID>SRS19510834</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86906418/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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<EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MN-CDC-QDX86906424/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497967" alias="QDX86906425"> <IDENTIFIERS> <PRIMARY_ID>SRX22497967</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906425</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> 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namespace="CDC-OAMD">QDX86906427</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510841"> <IDENTIFIERS> <PRIMARY_ID>SRS19510841</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86906427/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497970" alias="QDX86906428"> <IDENTIFIERS> <PRIMARY_ID>SRX22497970</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86906428</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510842"> <IDENTIFIERS> <PRIMARY_ID>SRS19510842</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86906428/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19510849"> <IDENTIFIERS> <PRIMARY_ID>SRS19510849</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86945917/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22497978" alias="QDX86945918"> <IDENTIFIERS> 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namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86946348/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498128" alias="QDX86946350"> <IDENTIFIERS> <PRIMARY_ID>SRX22498128</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86946350</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511000"> <IDENTIFIERS> <PRIMARY_ID>SRS19511000</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86946350/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498129" alias="QDX86946351"> <IDENTIFIERS> <PRIMARY_ID>SRX22498129</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86946351</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511001"> <IDENTIFIERS> <PRIMARY_ID>SRS19511001</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/KY-CDC-QDX86946351/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498130" alias="QDX86946352"> <IDENTIFIERS> <PRIMARY_ID>SRX22498130</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86946352</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511002"> <IDENTIFIERS> <PRIMARY_ID>SRS19511002</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/WI-CDC-QDX86946352/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498131" alias="QDX86946357"> <IDENTIFIERS> <PRIMARY_ID>SRX22498131</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86946357</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511003"> <IDENTIFIERS> <PRIMARY_ID>SRS19511003</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IN-CDC-QDX86946357/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498132" alias="QDX86946361"> <IDENTIFIERS> <PRIMARY_ID>SRX22498132</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86946361</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511004"> <IDENTIFIERS> <PRIMARY_ID>SRS19511004</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX86946361/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498134" alias="QDX86993343"> <IDENTIFIERS> <PRIMARY_ID>SRX22498134</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993343</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511006"> <IDENTIFIERS> <PRIMARY_ID>SRS19511006</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993343/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498136" alias="QDX86993347"> <IDENTIFIERS> <PRIMARY_ID>SRX22498136</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993347</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511008"> <IDENTIFIERS> <PRIMARY_ID>SRS19511008</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993347/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498137" alias="QDX86993349"> <IDENTIFIERS> <PRIMARY_ID>SRX22498137</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993349</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511009"> <IDENTIFIERS> <PRIMARY_ID>SRS19511009</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993349/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498138" alias="QDX86993350"> <IDENTIFIERS> <PRIMARY_ID>SRX22498138</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993350</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511010"> <IDENTIFIERS> <PRIMARY_ID>SRS19511010</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993350/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498139" alias="QDX86993351"> <IDENTIFIERS> <PRIMARY_ID>SRX22498139</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993351</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511011"> <IDENTIFIERS> <PRIMARY_ID>SRS19511011</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993351/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498140" alias="QDX86993352"> <IDENTIFIERS> <PRIMARY_ID>SRX22498140</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993352</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511012"> <IDENTIFIERS> <PRIMARY_ID>SRS19511012</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993352/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498141" alias="QDX86993353"> <IDENTIFIERS> <PRIMARY_ID>SRX22498141</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993353</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511013"> <IDENTIFIERS> <PRIMARY_ID>SRS19511013</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993353/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498142" alias="QDX86993355"> <IDENTIFIERS> <PRIMARY_ID>SRX22498142</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993355</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511014"> <IDENTIFIERS> <PRIMARY_ID>SRS19511014</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993355/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498143" alias="QDX86993357"> <IDENTIFIERS> <PRIMARY_ID>SRX22498143</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993357</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511015"> <IDENTIFIERS> <PRIMARY_ID>SRS19511015</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86993357/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498144" alias="QDX86993358"> <IDENTIFIERS> <PRIMARY_ID>SRX22498144</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993358</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511017"> <IDENTIFIERS> <PRIMARY_ID>SRS19511017</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86993358/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498145" alias="QDX86993359"> <IDENTIFIERS> <PRIMARY_ID>SRX22498145</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993359</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511016"> <IDENTIFIERS> <PRIMARY_ID>SRS19511016</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86993359/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498146" alias="QDX86993360"> <IDENTIFIERS> <PRIMARY_ID>SRX22498146</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993360</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511018"> <IDENTIFIERS> <PRIMARY_ID>SRS19511018</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993360/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498147" alias="QDX87048279"> <IDENTIFIERS> <PRIMARY_ID>SRX22498147</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048279</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511020"> <IDENTIFIERS> <PRIMARY_ID>SRS19511020</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048279/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498148" alias="QDX87048280"> <IDENTIFIERS> <PRIMARY_ID>SRX22498148</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048280</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511019"> <IDENTIFIERS> <PRIMARY_ID>SRS19511019</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048280/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498149" alias="QDX87048281"> <IDENTIFIERS> <PRIMARY_ID>SRX22498149</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048281</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511021"> <IDENTIFIERS> <PRIMARY_ID>SRS19511021</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048281/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498150" alias="QDX87048282"> <IDENTIFIERS> <PRIMARY_ID>SRX22498150</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048282</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511022"> <IDENTIFIERS> <PRIMARY_ID>SRS19511022</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048282/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498151" alias="QDX87048285"> <IDENTIFIERS> <PRIMARY_ID>SRX22498151</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048285</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511023"> <IDENTIFIERS> <PRIMARY_ID>SRS19511023</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX87048285/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498152" alias="QDX87048287"> <IDENTIFIERS> <PRIMARY_ID>SRX22498152</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048287</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511024"> <IDENTIFIERS> <PRIMARY_ID>SRS19511024</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX87048287/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498153" alias="QDX87048288"> <IDENTIFIERS> <PRIMARY_ID>SRX22498153</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048288</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511026"> <IDENTIFIERS> <PRIMARY_ID>SRS19511026</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048288/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498154" alias="QDX87048290"> <IDENTIFIERS> <PRIMARY_ID>SRX22498154</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048290</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511025"> <IDENTIFIERS> <PRIMARY_ID>SRS19511025</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048290/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498155" alias="QDX87048292"> <IDENTIFIERS> <PRIMARY_ID>SRX22498155</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048292</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511027"> <IDENTIFIERS> <PRIMARY_ID>SRS19511027</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048292/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498156" alias="QDX87048293"> <IDENTIFIERS> <PRIMARY_ID>SRX22498156</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048293</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511028"> <IDENTIFIERS> <PRIMARY_ID>SRS19511028</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048293/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498157" alias="QDX87048294"> <IDENTIFIERS> <PRIMARY_ID>SRX22498157</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048294</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511029"> <IDENTIFIERS> <PRIMARY_ID>SRS19511029</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048294/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498158" alias="QDX87048295"> <IDENTIFIERS> <PRIMARY_ID>SRX22498158</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048295</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511030"> <IDENTIFIERS> <PRIMARY_ID>SRS19511030</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048295/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498159" alias="QDX87048296"> <IDENTIFIERS> <PRIMARY_ID>SRX22498159</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048296</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511032"> <IDENTIFIERS> <PRIMARY_ID>SRS19511032</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048296/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498160" alias="QDX87048298"> <IDENTIFIERS> <PRIMARY_ID>SRX22498160</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048298</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511031"> <IDENTIFIERS> <PRIMARY_ID>SRS19511031</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048298/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498161" alias="QDX87048299"> <IDENTIFIERS> <PRIMARY_ID>SRX22498161</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048299</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511033"> <IDENTIFIERS> <PRIMARY_ID>SRS19511033</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048299/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498162" alias="QDX87048300"> <IDENTIFIERS> <PRIMARY_ID>SRX22498162</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048300</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511034"> <IDENTIFIERS> <PRIMARY_ID>SRS19511034</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048300/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498163" alias="QDX87048301"> <IDENTIFIERS> <PRIMARY_ID>SRX22498163</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048301</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511035"> <IDENTIFIERS> <PRIMARY_ID>SRS19511035</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX87048301/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498164" alias="QDX87048303"> <IDENTIFIERS> <PRIMARY_ID>SRX22498164</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048303</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511036"> <IDENTIFIERS> <PRIMARY_ID>SRS19511036</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048303/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498165" alias="QDX87048304"> <IDENTIFIERS> <PRIMARY_ID>SRX22498165</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048304</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511037"> <IDENTIFIERS> <PRIMARY_ID>SRS19511037</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048304/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498166" alias="QDX87048307"> <IDENTIFIERS> <PRIMARY_ID>SRX22498166</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048307</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511038"> <IDENTIFIERS> <PRIMARY_ID>SRS19511038</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048307/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498167" alias="QDX87048308"> <IDENTIFIERS> <PRIMARY_ID>SRX22498167</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048308</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511039"> <IDENTIFIERS> <PRIMARY_ID>SRS19511039</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048308/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498168" alias="QDX87048310"> <IDENTIFIERS> <PRIMARY_ID>SRX22498168</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048310</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511040"> <IDENTIFIERS> <PRIMARY_ID>SRS19511040</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048310/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498169" alias="QDX87048311"> <IDENTIFIERS> <PRIMARY_ID>SRX22498169</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048311</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511041"> <IDENTIFIERS> <PRIMARY_ID>SRS19511041</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048311/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498170" alias="QDX87048312"> <IDENTIFIERS> <PRIMARY_ID>SRX22498170</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048312</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511042"> <IDENTIFIERS> <PRIMARY_ID>SRS19511042</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048312/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498171" alias="QDX87048313"> <IDENTIFIERS> <PRIMARY_ID>SRX22498171</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048313</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511043"> <IDENTIFIERS> <PRIMARY_ID>SRS19511043</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048313/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498172" alias="QDX87048315"> <IDENTIFIERS> <PRIMARY_ID>SRX22498172</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048315</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511044"> <IDENTIFIERS> <PRIMARY_ID>SRS19511044</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048315/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498173" alias="QDX87048316"> <IDENTIFIERS> <PRIMARY_ID>SRX22498173</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048316</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511045"> <IDENTIFIERS> <PRIMARY_ID>SRS19511045</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048316/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498175" alias="QDX86993361"> <IDENTIFIERS> <PRIMARY_ID>SRX22498175</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993361</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511047"> <IDENTIFIERS> <PRIMARY_ID>SRS19511047</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993361/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498176" alias="QDX86993362"> <IDENTIFIERS> <PRIMARY_ID>SRX22498176</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993362</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511048"> <IDENTIFIERS> <PRIMARY_ID>SRS19511048</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NJ-CDC-QDX86993362/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498178" alias="QDX86993364"> <IDENTIFIERS> <PRIMARY_ID>SRX22498178</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993364</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511051"> <IDENTIFIERS> <PRIMARY_ID>SRS19511051</PRIMARY_ID> <EXTERNAL_ID 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<SAMPLE_DESCRIPTOR accession="SRS19511050"> <IDENTIFIERS> <PRIMARY_ID>SRS19511050</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993365/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498180" alias="QDX86993366"> <IDENTIFIERS> <PRIMARY_ID>SRX22498180</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993366</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511053"> <IDENTIFIERS> <PRIMARY_ID>SRS19511053</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993366/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498181" alias="QDX86993369"> <IDENTIFIERS> <PRIMARY_ID>SRX22498181</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993369</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511052"> <IDENTIFIERS> <PRIMARY_ID>SRS19511052</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/PA-CDC-QDX86993369/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498182" alias="QDX86993370"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498183" alias="QDX86993371"> <IDENTIFIERS> <PRIMARY_ID>SRX22498183</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993371</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511055"> <IDENTIFIERS> <PRIMARY_ID>SRS19511055</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993371/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498185" alias="QDX86993373"> <IDENTIFIERS> <PRIMARY_ID>SRX22498185</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993373</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511057"> <IDENTIFIERS> <PRIMARY_ID>SRS19511057</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993373/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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</SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498187" alias="QDX86993376"> <IDENTIFIERS> <PRIMARY_ID>SRX22498187</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993376</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511059"> <IDENTIFIERS> <PRIMARY_ID>SRS19511059</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993376/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498188" alias="QDX86993378"> <IDENTIFIERS> <PRIMARY_ID>SRX22498188</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993378</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511060"> <IDENTIFIERS> <PRIMARY_ID>SRS19511060</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993378/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498189" alias="QDX86993379"> <IDENTIFIERS> <PRIMARY_ID>SRX22498189</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993379</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511061"> <IDENTIFIERS> <PRIMARY_ID>SRS19511061</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/FL-CDC-QDX86993379/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498190" alias="QDX86993386"> <IDENTIFIERS> <PRIMARY_ID>SRX22498190</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993386</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511062"> <IDENTIFIERS> <PRIMARY_ID>SRS19511062</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993386/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498191" alias="QDX86993387"> <IDENTIFIERS> <PRIMARY_ID>SRX22498191</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993387</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511063"> <IDENTIFIERS> <PRIMARY_ID>SRS19511063</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993387/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498192" alias="QDX86993388"> <IDENTIFIERS> <PRIMARY_ID>SRX22498192</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993388</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511064"> <IDENTIFIERS> <PRIMARY_ID>SRS19511064</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993388/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498193" alias="QDX86993389"> <IDENTIFIERS> <PRIMARY_ID>SRX22498193</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993389</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511065"> <IDENTIFIERS> <PRIMARY_ID>SRS19511065</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993389/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498194" alias="QDX86993391"> <IDENTIFIERS> <PRIMARY_ID>SRX22498194</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993391</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511066"> <IDENTIFIERS> <PRIMARY_ID>SRS19511066</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993391/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498195" alias="QDX86993392"> <IDENTIFIERS> <PRIMARY_ID>SRX22498195</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993392</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511067"> <IDENTIFIERS> <PRIMARY_ID>SRS19511067</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993392/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498196" alias="QDX86993393"> <IDENTIFIERS> <PRIMARY_ID>SRX22498196</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993393</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511068"> <IDENTIFIERS> <PRIMARY_ID>SRS19511068</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993393/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498197" alias="QDX86993395"> <IDENTIFIERS> <PRIMARY_ID>SRX22498197</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993395</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511069"> <IDENTIFIERS> <PRIMARY_ID>SRS19511069</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993395/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498198" alias="QDX86993397"> <IDENTIFIERS> <PRIMARY_ID>SRX22498198</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993397</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511070"> <IDENTIFIERS> <PRIMARY_ID>SRS19511070</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993397/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498199" alias="QDX86993401"> <IDENTIFIERS> <PRIMARY_ID>SRX22498199</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993401</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511072"> <IDENTIFIERS> <PRIMARY_ID>SRS19511072</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993401/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498200" alias="QDX86993404"> <IDENTIFIERS> <PRIMARY_ID>SRX22498200</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993404</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511071"> <IDENTIFIERS> <PRIMARY_ID>SRS19511071</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993404/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498201" alias="QDX86993405"> <IDENTIFIERS> <PRIMARY_ID>SRX22498201</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993405</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511073"> <IDENTIFIERS> <PRIMARY_ID>SRS19511073</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993405/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498202" alias="QDX86993409"> <IDENTIFIERS> <PRIMARY_ID>SRX22498202</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX86993409</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511074"> <IDENTIFIERS> <PRIMARY_ID>SRS19511074</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX86993409/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498203" alias="QDX87048318"> <IDENTIFIERS> <PRIMARY_ID>SRX22498203</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048318</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511075"> <IDENTIFIERS> <PRIMARY_ID>SRS19511075</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/NY-CDC-QDX87048318/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498204" alias="QDX87048319"> <IDENTIFIERS> <PRIMARY_ID>SRX22498204</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048319</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511076"> <IDENTIFIERS> <PRIMARY_ID>SRS19511076</PRIMARY_ID> 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<INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498209" alias="QDX87048328"> <IDENTIFIERS> <PRIMARY_ID>SRX22498209</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048328</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511081"> <IDENTIFIERS> <PRIMARY_ID>SRS19511081</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/MO-CDC-QDX87048328/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498210" alias="QDX87048333"> <IDENTIFIERS> <PRIMARY_ID>SRX22498210</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048333</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511082"> <IDENTIFIERS> <PRIMARY_ID>SRS19511082</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CT-CDC-QDX87048333/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> 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<TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511087"> <IDENTIFIERS> <PRIMARY_ID>SRS19511087</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048346/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498216" alias="QDX87048348"> <IDENTIFIERS> 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</ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498217" alias="QDX87048349"> <IDENTIFIERS> <PRIMARY_ID>SRX22498217</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048349</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511089"> <IDENTIFIERS> <PRIMARY_ID>SRS19511089</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/CA-CDC-QDX87048349/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> <LIBRARY_SOURCE>VIRAL RNA</LIBRARY_SOURCE> <LIBRARY_SELECTION>RT-PCR</LIBRARY_SELECTION> <LIBRARY_LAYOUT> <PAIRED/> </LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> 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</LIBRARY_LAYOUT> <LIBRARY_CONSTRUCTION_PROTOCOL>LDT, ARTIC v4.1 primer on Novaseq</LIBRARY_CONSTRUCTION_PROTOCOL> </LIBRARY_DESCRIPTOR> </DESIGN> <PLATFORM> <ILLUMINA> <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL> </ILLUMINA> </PLATFORM> </EXPERIMENT> <EXPERIMENT accession="SRX22498219" alias="QDX87048352"> <IDENTIFIERS> <PRIMARY_ID>SRX22498219</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">QDX87048352</EXTERNAL_ID> </IDENTIFIERS> <TITLE/> <STUDY_REF accession="SRP314645"> <IDENTIFIERS> <PRIMARY_ID>SRP314645</PRIMARY_ID> <EXTERNAL_ID namespace="BioProject">PRJNA716985</EXTERNAL_ID> </IDENTIFIERS> </STUDY_REF> <DESIGN> <DESIGN_DESCRIPTION/> <SAMPLE_DESCRIPTOR accession="SRS19511091"> <IDENTIFIERS> <PRIMARY_ID>SRS19511091</PRIMARY_ID> <EXTERNAL_ID namespace="CDC-OAMD">SARS-CoV-2/Human/USA/IL-CDC-QDX87048352/2023</EXTERNAL_ID> </IDENTIFIERS> </SAMPLE_DESCRIPTOR> <LIBRARY_DESCRIPTOR> <LIBRARY_NAME>Unknown</LIBRARY_NAME> <LIBRARY_STRATEGY>AMPLICON</LIBRARY_STRATEGY> 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