SRS19510824 SAMN38222366 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906321/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510825 SAMN38222365 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906323/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name GE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510826 SAMN38222364 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906324/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510827 SAMN38222363 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906325/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510828 SAMN38222362 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906326/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510829 SAMN38222361 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86906327/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510830 SAMN38222374 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX86906342/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-23 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name XBB.1.16.23 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510831 SAMN38222314 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KS-CDC-QDX86906344/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Kansas host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510832 SAMN38222373 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX86906347/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 23 lineage/clade name EG.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510833 SAMN38222290 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX86906417/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510834 SAMN38222313 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86906418/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510835 SAMN38222312 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86906421/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name XBB.1.5.37 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510836 SAMN38222298 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86906422/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HK.3.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510837 SAMN38222297 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86906423/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 12 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name FY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510838 SAMN38222289 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MN-CDC-QDX86906424/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Minnesota host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510839 SAMN38222333 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86906425/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510840 SAMN38222332 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86906426/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510841 SAMN38222311 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86906427/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510842 SAMN38222310 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86906428/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name GE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510843 SAMN38222309 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86906429/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name XBB.1.16.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510844 SAMN38222319 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX86906430/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510845 SAMN38222296 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86906431/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name JF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510846 SAMN38222295 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86906435/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-24 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510847 SAMN38222123 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX86945914/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510848 SAMN38222122 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX86945915/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510849 SAMN38222248 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945917/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 19 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510850 SAMN38222247 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945918/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510851 SAMN38222246 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945919/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name FL.20 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510852 SAMN38222229 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945995/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.2.3.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510853 SAMN38222228 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945998/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name EG.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510854 SAMN38222227 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946001/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510855 SAMN38222226 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946004/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510856 SAMN38222225 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946007/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510857 SAMN38222224 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946013/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 37 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510858 SAMN38222280 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946015/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510859 SAMN38222113 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86946016/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 8 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510860 SAMN38222223 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946017/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510861 SAMN38222279 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946019/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510862 SAMN38222222 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946020/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510863 SAMN38222221 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946021/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510864 SAMN38222220 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86946022/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510865 SAMN38222300 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX86946023/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510866 SAMN38222278 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946025/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name GS.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510867 SAMN38222277 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946027/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.10.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510868 SAMN38222276 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946028/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FU.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510869 SAMN38222275 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946030/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510870 SAMN38222274 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946036/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name XCH.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510871 SAMN38222273 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946037/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name EG.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510872 SAMN38222272 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946038/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510873 SAMN38222271 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946039/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 80 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510874 SAMN38222270 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86946041/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 58 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510875 SAMN38222360 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86946051/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510876 SAMN38222331 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946096/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 12 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name GN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510877 SAMN38222372 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX86946100/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510878 SAMN38222371 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/AR-CDC-QDX86946101/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Arkansas host Homo sapiens host_disease COVID-19 host_sex female host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 21 lineage/clade name XBB.1.16.13 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510879 SAMN38222288 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX86946102/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 64 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510880 SAMN38222110 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048223/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510881 SAMN38222175 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048224/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510882 SAMN38222174 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048225/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510883 SAMN38222262 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048241/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510884 SAMN38222261 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048244/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510885 SAMN38222098 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/VA-CDC-QDX87048245/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Virginia host Homo sapiens host_disease COVID-19 host_sex male host_age 55 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name XBB.1.9.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510886 SAMN38222260 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048246/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name FL.15.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510887 SAMN38222358 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX87048247/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 25 lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510888 SAMN38222357 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX87048248/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510889 SAMN38222356 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX87048249/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 24 lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510890 SAMN38222355 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX87048250/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 25 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510891 SAMN38222354 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX87048251/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510892 SAMN38222369 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX87048253/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510893 SAMN38222255 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048256/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510894 SAMN38222254 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048257/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name FL.1.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510895 SAMN38222253 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048258/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex male host_age 75 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510896 SAMN38222252 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048259/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 77 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name HS.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510897 SAMN38222251 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048260/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name GK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510898 SAMN38222250 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87048265/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex Unknown host_age 62 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510899 SAMN38222097 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WA-CDC-QDX87048266/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Washington host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510900 SAMN38222172 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048269/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510901 SAMN38222173 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048268/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510902 SAMN38222171 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048273/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510903 SAMN38222170 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048274/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510904 SAMN38222169 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048275/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510905 SAMN38222168 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048276/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510906 SAMN38222167 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048277/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510907 SAMN38222166 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048278/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510908 SAMN38222245 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945929/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510909 SAMN38222286 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945931/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name JE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510910 SAMN38222119 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945934/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 19 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510911 SAMN38222118 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945937/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510912 SAMN38222285 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945938/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 46 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510913 SAMN38222117 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945939/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 17 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510914 SAMN38222244 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945941/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510915 SAMN38222243 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945942/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510916 SAMN38222116 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945943/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 69 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510917 SAMN38222284 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945944/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510918 SAMN38222242 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945945/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 13 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510919 SAMN38222241 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945958/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GS.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510920 SAMN38222283 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945959/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510921 SAMN38222240 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945960/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510922 SAMN38222239 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945962/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510923 SAMN38222238 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945963/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name GE.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510924 SAMN38222115 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945965/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510925 SAMN38222282 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945966/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name XBB.1.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510926 SAMN38222237 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945971/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 49 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510927 SAMN38222236 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945972/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 14 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510928 SAMN38222235 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945973/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510929 SAMN38222234 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945975/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510930 SAMN38222233 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945977/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name XBB.1.16.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510931 SAMN38222114 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86945979/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510932 SAMN38222232 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945983/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race OTHER RACE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510933 SAMN38222231 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945987/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name XBB.1.16.14 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510934 SAMN38222230 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86945988/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510935 SAMN38222281 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86945989/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 67 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510936 SAMN38222190 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993411/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510937 SAMN38222189 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993413/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 36 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510938 SAMN38222188 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993416/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GS.4.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510939 SAMN38222187 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993417/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510940 SAMN38222186 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993419/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510941 SAMN38222185 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993422/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GW.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510942 SAMN38222184 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993424/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 37 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510943 SAMN38222183 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993426/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510944 SAMN38222182 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993428/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510945 SAMN38222181 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993433/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510946 SAMN38222180 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993435/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510947 SAMN38222179 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993436/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510948 SAMN38222370 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX86993438/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510949 SAMN38222340 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993441/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510950 SAMN38222341 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993440/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510951 SAMN38222339 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993442/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510952 SAMN38222338 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993445/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510953 SAMN38222337 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993446/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510954 SAMN38222336 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993449/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510955 SAMN38222335 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993451/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510956 SAMN38222334 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993453/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510957 SAMN38222178 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048203/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510958 SAMN38222177 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048206/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 84 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510959 SAMN38222176 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048209/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510960 SAMN38222111 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048216/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 71 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510961 SAMN38222265 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048219/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name HK.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510962 SAMN38222264 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048220/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510963 SAMN38222263 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87048221/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510964 SAMN38222134 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155408/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 95 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510965 SAMN38222133 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155409/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510966 SAMN38222132 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155410/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510967 SAMN38222131 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155412/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510968 SAMN38222130 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155413/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 81 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 16 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510969 SAMN38222129 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155414/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510970 SAMN38222105 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155417/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510971 SAMN38222128 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155420/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 69 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name FY.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510972 SAMN38222127 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155421/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510973 SAMN38222104 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155424/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 82 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510974 SAMN38222299 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MD-CDC-QDX87155427/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Maryland host Homo sapiens host_disease COVID-19 host_sex female host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510975 SAMN38222103 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155430/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510976 SAMN38222126 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155441/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510977 SAMN38222259 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87155448/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510978 SAMN38222258 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87155449/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510979 SAMN38222125 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155452/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 79 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510980 SAMN38222124 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155459/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 43 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510981 SAMN38222102 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155464/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510982 SAMN38222101 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155465/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race ASIAN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510983 SAMN38222100 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155466/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 47 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510984 SAMN38222257 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87155468/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 6 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510985 SAMN38222099 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87155510/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510986 SAMN38222256 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX87155513/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510987 SAMN38222367 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX87155564/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 30 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510988 SAMN38222302 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX87155683/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510989 SAMN38222301 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX87155684/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-11-01 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name XBB.1.5.70 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510990 SAMN38222249 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NV-CDC-QDX87155714/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: Nevada host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510991 SAMN38222359 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CO-CDC-QDX86946308/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Colorado host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 18 lineage/clade name HF.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510992 SAMN38222318 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX86946325/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 63 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510993 SAMN38222330 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946330/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510994 SAMN38222308 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86946337/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 8 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510995 SAMN38222294 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86946340/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510996 SAMN38222293 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX86946342/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name GE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510997 SAMN38222329 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946344/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510998 SAMN38222328 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946345/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19510999 SAMN38222327 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946348/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511000 SAMN38222317 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX86946350/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name FY.5 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511001 SAMN38222307 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX86946351/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 13 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name XBB.1.16.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511002 SAMN38222096 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/WI-CDC-QDX86946352/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Wisconsin host Homo sapiens host_disease COVID-19 host_sex male host_age 52 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511003 SAMN38222316 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX86946357/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex male host_age 95 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511004 SAMN38222326 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX86946361/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name JF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511005 SAMN38222219 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993340/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 21 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511006 SAMN38222218 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993343/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511007 SAMN38222217 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993346/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 72 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511008 SAMN38222216 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993347/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Hologic diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511009 SAMN38222215 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993349/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 65 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511010 SAMN38222214 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993350/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511011 SAMN38222213 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993351/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511012 SAMN38222212 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993352/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name XBB.1.16.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511013 SAMN38222211 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993353/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511014 SAMN38222210 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993355/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511015 SAMN38222269 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86993357/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 48 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511016 SAMN38222267 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86993359/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511017 SAMN38222268 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86993358/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex male host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511018 SAMN38222209 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993360/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name GK.2.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511019 SAMN38222164 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048280/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HY.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511020 SAMN38222165 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048279/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511021 SAMN38222163 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048281/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511022 SAMN38222162 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048282/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511023 SAMN38222109 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048285/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 38 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511024 SAMN38222108 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048287/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511025 SAMN38222160 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048290/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 70 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511026 SAMN38222161 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048288/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.15 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511027 SAMN38222159 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048292/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511028 SAMN38222158 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048293/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511029 SAMN38222157 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048294/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 33 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511030 SAMN38222156 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048295/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511031 SAMN38222154 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048298/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 66 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GJ.1.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511032 SAMN38222155 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048296/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 56 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511033 SAMN38222153 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048299/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XCM BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511034 SAMN38222152 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048300/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511035 SAMN38222107 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048301/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511036 SAMN38222151 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048303/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 41 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511037 SAMN38222150 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048304/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511038 SAMN38222149 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048307/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 28 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511039 SAMN38222148 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048308/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 40 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511040 SAMN38222147 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048310/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 55 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511041 SAMN38222146 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048311/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 76 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HK.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511042 SAMN38222145 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048312/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511043 SAMN38222144 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048313/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 28 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JG.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511044 SAMN38222143 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048315/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 45 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.2 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511045 SAMN38222142 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048316/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511046 SAMN38222141 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048317/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 26 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511047 SAMN38222208 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993361/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511048 SAMN38222266 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NJ-CDC-QDX86993362/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New Jersey host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511049 SAMN38222207 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993363/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 30 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511050 SAMN38222205 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993365/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 88 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511051 SAMN38222206 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993364/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 93 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511052 SAMN38222112 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX86993369/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 49 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511053 SAMN38222204 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993366/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 15 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511054 SAMN38222349 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993370/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 11 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511055 SAMN38222348 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993371/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 18 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511056 SAMN38222347 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993372/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-25 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511057 SAMN38222346 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993373/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-26 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 29 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511058 SAMN38222345 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993374/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 57 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511059 SAMN38222344 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993376/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 43 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511060 SAMN38222343 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993378/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex male host_age 64 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511061 SAMN38222342 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/FL-CDC-QDX86993379/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Florida host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511062 SAMN38222203 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993386/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-27 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 5 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511063 SAMN38222202 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993387/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name GK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511064 SAMN38222201 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993388/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 46 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511065 SAMN38222200 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993389/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 62 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511066 SAMN38222199 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993391/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 22 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511067 SAMN38222198 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993392/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 25 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511068 SAMN38222197 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993393/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511069 SAMN38222196 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993395/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 31 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511070 SAMN38222195 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993397/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 44 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511071 SAMN38222193 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993404/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 61 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511072 SAMN38222194 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993401/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 36 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name GK.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511073 SAMN38222192 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993405/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 53 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511074 SAMN38222191 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX86993409/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 59 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511075 SAMN38222140 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048318/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511076 SAMN38222139 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048319/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 32 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name EG.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511077 SAMN38222138 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048320/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex male host_age 34 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511078 SAMN38222121 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX87048322/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex male host_age 68 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name JD.1.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511079 SAMN38222137 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87048323/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 45 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511080 SAMN38222106 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/PA-CDC-QDX87048324/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Pennsylvania host Homo sapiens host_disease COVID-19 host_sex male host_age 2 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 Unknown lineage/clade name XBB.1.16.11 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511081 SAMN38222287 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MO-CDC-QDX87048328/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Missouri host Homo sapiens host_disease COVID-19 host_sex female host_age 60 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 LDT diagnostic_pcr_Ct_value_1 Unknown lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511082 SAMN38222353 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX87048333/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 24 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511083 SAMN38222352 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX87048334/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 42 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name EG.5.1.4 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511084 SAMN38222303 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MA-CDC-QDX87048340/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Massachusetts host Homo sapiens host_disease COVID-19 host_sex male host_age 0 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 18 lineage/clade name FL.34 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511085 SAMN38222351 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX87048342/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex female host_age 51 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 23 lineage/clade name GE.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511086 SAMN38222315 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IN-CDC-QDX87048345/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Indiana host Homo sapiens host_disease COVID-19 host_sex female host_age 54 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 25 lineage/clade name HK.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511087 SAMN38222325 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048346/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-29 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 23 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name BA.2.86 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511088 SAMN38222324 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048348/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex female host_age 50 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HK.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511089 SAMN38222368 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CA-CDC-QDX87048349/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-28 isolation_source Nasal Swabs geo_loc_name USA: California host Homo sapiens host_disease COVID-19 host_sex male host_age 38 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name EG.5.1.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511090 SAMN38222323 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048351/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 57 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name EG.5.1.9 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511091 SAMN38222322 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048352/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 35 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511092 SAMN38222321 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048353/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 20 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name JN.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511093 SAMN38222320 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/IL-CDC-QDX87048354/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Illinois host Homo sapiens host_disease COVID-19 host_sex male host_age 1 host_race WHITE collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 26 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511094 SAMN38222120 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/OH-CDC-QDX87048357/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Ohio host Homo sapiens host_disease COVID-19 host_sex female host_age 27 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name XBB.1.16.6 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511095 SAMN38222306 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX87048355/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 1 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 19 lineage/clade name FL.1.5.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511096 SAMN38222305 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX87048360/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex male host_age 73 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511097 SAMN38222304 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/KY-CDC-QDX87048361/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Kentucky host Homo sapiens host_disease COVID-19 host_sex female host_age 73 host_race BLACK OR AFR AM collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 20 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511098 SAMN38222292 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX87048362/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex male host_age 51 host_race UNKNOWN collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 22 lineage/clade name HF.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511099 SAMN38222350 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/CT-CDC-QDX87102448/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: Connecticut host Homo sapiens host_disease COVID-19 host_sex male host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 21 lineage/clade name EG.5.1.3 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511100 SAMN38222291 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/MI-CDC-QDX87048365/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-30 isolation_source Nasal Swabs geo_loc_name USA: Michigan host Homo sapiens host_disease COVID-19 host_sex female host_age 39 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name XBB.1.5.59 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511101 SAMN38222136 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155405/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 94 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 24 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated SRS19511102 SAMN38222135 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 716985 PRJNA716985 Isolate SARS-CoV-2/Human/USA/NY-CDC-QDX87155407/2023 collected_by Quest Diagnostics Incorporated collection_date 2023-10-31 isolation_source Nasal Swabs geo_loc_name USA: New York host Homo sapiens host_disease COVID-19 host_sex female host_age 89 host_race Unknown collection_device Nasal Swabs collection_method Nasal Swabs purpose_of_sequencing baseline surveillance (random sampling) diagnostic_pcr_protocol_1 Roche diagnostic_pcr_Ct_value_1 17 lineage/clade name HV.1 BioSampleModel SARS-CoV-2: clinical or host-associated