SRS19516391 SAMN38201897 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.71 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 27200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516392 SAMN38201898 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.49 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23600.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516393 SAMN38201899 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.63 instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516394 SAMN38201801 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.55 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 77300.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516395 SAMN38201900 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.07 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 16900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516396 SAMN38201901 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.4 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516397 SAMN38201902 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.04 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516398 SAMN38201903 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.12 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516399 SAMN38201904 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516400 SAMN38201905 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id ER20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516401 SAMN38201906 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.2 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516402 SAMN38201907 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.82 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516403 SAMN38201908 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.32 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516404 SAMN38201909 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-17 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 13.05 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20230917 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516405 SAMN38201802 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.38 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516406 SAMN38201910 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.32 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id MT20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4480.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516407 SAMN38201911 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-18 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.81 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20230918 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4320.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516408 SAMN38201820 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-08 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.36 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20230908 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61100.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516409 SAMN38201821 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.57 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15500.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516410 SAMN38201822 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.23 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 222000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516411 SAMN38201823 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-05 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20230905 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6520.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516412 SAMN38201824 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.4 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516413 SAMN38201825 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-11 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.68 instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20230911 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 71800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516414 SAMN38201826 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20230911 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 142000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516415 SAMN38201827 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-04 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 18.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20230904 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 80300.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516416 SAMN38201829 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-10 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.45 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20230910 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 14320.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516417 SAMN38201828 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-11 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.04 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20230911 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 121000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516418 SAMN38201794 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.96 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 21100.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516419 SAMN38201830 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-10 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.76 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20230910 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 44500.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516420 SAMN38201831 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-11 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.18 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20230911 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 29900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516421 SAMN38201832 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-10 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SP20230910 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516422 SAMN38201833 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-12 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id ER20230912 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 83900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516423 SAMN38201834 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.95 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516424 SAMN38201835 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.47 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 106000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516425 SAMN38201836 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.9 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516426 SAMN38201837 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 57.28 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516427 SAMN38201838 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.34 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516428 SAMN38201839 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SP20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516429 SAMN38201795 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.73 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516430 SAMN38201840 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.35 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516431 SAMN38201841 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.1 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id MT20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4160.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516432 SAMN38201864 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.45 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 104000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516433 SAMN38201865 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.09 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 253000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516434 SAMN38201866 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.63 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 162000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516435 SAMN38201867 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.64 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516436 SAMN38201868 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.22 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 102000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516437 SAMN38201869 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.19 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516438 SAMN38201798 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.32 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 57800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516439 SAMN38201870 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.55 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SV20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 123000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516440 SAMN38201871 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.47 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516441 SAMN38201872 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.93 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516442 SAMN38201873 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 29.29 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516443 SAMN38201874 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 60.47 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516444 SAMN38201875 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.74 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46500.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516445 SAMN38201876 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.59 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SV20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 89400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516446 SAMN38201877 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.47 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516447 SAMN38201878 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.09 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11100.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516448 SAMN38201879 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.67 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516449 SAMN38201799 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 91600.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516450 SAMN38201880 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.08 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6320.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516451 SAMN38201881 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.15 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516452 SAMN38201883 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.12 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 44600.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516453 SAMN38201882 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.73 instantaneous_flow NaN ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 50000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516454 SAMN38201884 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.4 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516455 SAMN38201912 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.74 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20230911 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516456 SAMN38201885 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.17 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id AP20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 29900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516457 SAMN38201913 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.52 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 58000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516458 SAMN38201915 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.37 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 97900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516459 SAMN38201914 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 90900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516460 SAMN38201916 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.25 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id CZ20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 21600.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516461 SAMN38201803 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.12 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id CM20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 446000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516462 SAMN38201804 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.28 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id OU20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 483000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516464 SAMN38201806 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.67 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SV20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 991000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516465 SAMN38201807 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.33 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516466 SAMN38201808 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.7 instantaneous_flow NaN ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 371000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516381 SAMN38201790 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.35 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516382 SAMN38201791 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.87 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516383 SAMN38201800 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-04 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.32 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20230904 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23240.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516384 SAMN38201890 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.86 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516385 SAMN38201891 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 1.2 ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id TD20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516386 SAMN38201892 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.02 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 65300.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516387 SAMN38201893 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id LF20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516388 SAMN38201894 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.22 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4360.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516389 SAMN38201895 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.53 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4240.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516390 SAMN38201896 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.14 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516463 SAMN38201805 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.06 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 147000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516467 SAMN38201809 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 1.11 ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id TD20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 249000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516468 SAMN38201792 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-05 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.3 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20230905 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516469 SAMN38201810 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.65 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 132000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516470 SAMN38201811 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.06 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4360.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516471 SAMN38201812 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.95 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 40900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516472 SAMN38201813 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 84400.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516473 SAMN38201814 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-06 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.67 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20230906 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51500.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516474 SAMN38201815 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.38 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38100.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516475 SAMN38201816 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.77 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id CZ20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516476 SAMN38201817 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.51 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 48700.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516477 SAMN38201818 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.24 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 323000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516478 SAMN38201819 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-08 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.21 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20230908 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 59700.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516479 SAMN38201793 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.16 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id LJ20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516480 SAMN38201886 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.03 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6440.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516481 SAMN38201887 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-13 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.38 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20230913 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33300.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516482 SAMN38201888 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 12.7 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 173000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516483 SAMN38201889 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-14 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.76 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20230914 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28800.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516484 SAMN38201842 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 12.28 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516485 SAMN38201843 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.86 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516486 SAMN38201844 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.22 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id OU20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516487 SAMN38201845 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-28 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.77 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20230928 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4440.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516488 SAMN38201846 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.29 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8560.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516489 SAMN38201847 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-25 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.22 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20230925 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516490 SAMN38201848 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-05 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.74 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20231005 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516491 SAMN38201849 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.69 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20230928 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4360.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516492 SAMN38201796 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.17 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration NaN ww_surv_system_sample_id AP20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 138000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516493 SAMN38201850 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-28 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.0 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20230928 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516494 SAMN38201851 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-28 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.91 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20230928 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516495 SAMN38201852 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-28 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 59.0 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20230928 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8480.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516496 SAMN38201853 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-01 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SJ20231001 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene missing purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516497 SAMN38201854 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-02 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.28 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231002 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4200.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516498 SAMN38201855 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.64 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4240.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516499 SAMN38201856 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.91 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516500 SAMN38201857 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.3 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516501 SAMN38201858 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 28.06 instantaneous_flow NaN ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516502 SAMN38201859 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.84 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516503 SAMN38201797 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-09-07 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.08 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20230907 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36900.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516504 SAMN38201860 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-03 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 59.1 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231003 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene VP1 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516505 SAMN38201861 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-04 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 12.2 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231004 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene M1, NS2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516506 SAMN38201862 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-04 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.2 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20231004 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4320.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS19516507 SAMN38201863 527639 wastewater metagenome bioproject 850375 PRJNA850375 collection_date 2023-10-04 geo_loc_name USA: Colorado, Denver Arapahoe, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.9 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20231004 concentration_method innovaprep ultrafiltration extraction_method qiagen EZ1 RNA extraction kit extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110000.0 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance