SRS20062215 SAMN39239505 410661 mouse gut metagenome Total genomic DNA from cecal and colonic contents derived from 8-week-old specific pathogen free (SPF) WT C57Bl/6J mice was extracted using phenol:chloroform:isoamyl alcohol solution following extensive bacterial interruption and lysis with Silica glass beads. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 8 weeks host_disease none, healthy host_genotype wild-type host_tissue_sampled cecal and colonic contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062216 SAMN39239507 410661 mouse gut metagenome Total genomic DNA from cecal and colonic contents derived from 8-week-old specific pathogen free (SPF) C3-/- mice was extracted using phenol:chloroform:isoamyl alcohol solution following extensive bacterial interruption and lysis with Silica glass beads. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 8 weeks host_disease none, healthy host_genotype C3-/- host_tissue_sampled cecal and colonic contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062217 SAMN39239508 410661 mouse gut metagenome Total genomic DNA from stomach contents derived from 14-day-old specific pathogen free (SPF) WT C57Bl/6J mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype wild-type host_tissue_sampled stomach contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062218 SAMN39239509 410661 mouse gut metagenome Total genomic DNA from stomach contents derived from 14-day-old specific pathogen free (SPF) C1qc-/- mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype C1qc-/- host_tissue_sampled stomach contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062219 SAMN39239510 410661 mouse gut metagenome Total genomic DNA from stomach contents derived from 14-day-old specific pathogen free (SPF) C3-/- mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype C3-/- host_tissue_sampled stomach contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062220 SAMN39239511 410661 mouse gut metagenome Total genomic DNA from small intestinal contents derived from 14-day-old specific pathogen free (SPF) WT C57Bl/6J mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype wild-type host_tissue_sampled small intestinal contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062221 SAMN39239512 410661 mouse gut metagenome Total genomic DNA from small intestinal contents derived from 14-day-old specific pathogen free (SPF) C1qc-/- mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype C1qc-/- host_tissue_sampled small intestinal contents sample_type 16S rRNA gene sequencing samp_size 6 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062222 SAMN39239513 410661 mouse gut metagenome Total genomic DNA from small intestinal contents derived from 14-day-old specific pathogen free (SPF) C3-/- mice was extracted using PureLink Microbiome DNA Purification Kit (Thermo Fisher Scientific). The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 14 days host_disease none, healthy host_genotype C3-/- host_tissue_sampled small intestinal contents sample_type 16S rRNA gene sequencing samp_size 4 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062223 SAMN39239514 410661 mouse gut metagenome Total genomic DNA from breast milk contents derived from specific pathogen free (SPF) WT C57Bl/6J dams at postpartum 14 days was extracted using the Milk Bacterial DNA isolation Kit (Norgen Bioteck), with supplemented lysostaphin for lysing lysozyme-resistant gram-positive bacteria. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age postpartum 14 days host_disease none, healthy host_genotype wild-type host_sex female host_tissue_sampled breast milk contents sample_type 16S rRNA gene sequencing samp_size 4 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062224 SAMN39239515 410661 mouse gut metagenome Total genomic DNA from breast milk contents derived from specific pathogen free (SPF) C1qc-/- dams at postpartum 14 days was extracted using the Milk Bacterial DNA isolation Kit (Norgen Bioteck), with supplemented lysostaphin for lysing lysozyme-resistant gram-positive bacteria. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age postpartum 14 days host_disease none, healthy host_genotype C1qc-/- host_sex female host_tissue_sampled breast milk contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062225 SAMN39239506 410661 mouse gut metagenome Total genomic DNA from cecal and colonic contents derived from 8-week-old specific pathogen free (SPF) C1qc-/- mice was extracted using phenol:chloroform:isoamyl alcohol solution following extensive bacterial interruption and lysis with Silica glass beads. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age 8 weeks host_disease none, healthy host_genotype C1qc-/- host_tissue_sampled cecal and colonic contents sample_type 16S rRNA gene sequencing samp_size 5 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated SRS20062226 SAMN39239516 410661 mouse gut metagenome Total genomic DNA from breast milk contents derived from specific pathogen free (SPF) C3-/- dams at postpartum 14 days was extracted using the Milk Bacterial DNA isolation Kit (Norgen Bioteck), with supplemented lysostaphin for lysing lysozyme-resistant gram-positive bacteria. The V4 region of 16S rRNA gene were amplified with the published primer pair of 515F and 806R, followed by sequencing using an Ion S5 XL platform and 400 bp single-end reads were generated. bioproject 796457 PRJNA796457 strain C57BL/6 background collection_date NA env_broad_scale NA env_local_scale NA env_medium NA geo_loc_name USA: Baltimore host Mus musculus isol_growth_condt 29420293 lat_lon NA host_age postpartum 14 days host_disease none, healthy host_genotype C3-/- host_sex female host_tissue_sampled breast milk contents sample_type 16S rRNA gene sequencing samp_size 4 BioSampleModel MIMARKS.specimen BioSampleModel MIGS/MIMS/MIMARKS.host-associated