<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX23147567" alias="GSM8008527_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147567</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008527_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008527: control replicate 1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098378">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098378</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008527</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008527</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147568" alias="GSM8008528_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147568</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008528_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008528: control replicate 2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098379">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098379</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008528</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008528</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147569" alias="GSM8008529_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147569</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008529_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008529: control replicate 3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098380">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098380</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008529</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008529</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147570" alias="GSM8008541_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147570</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008541_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008541: Infected replicate 5; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098383">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098383</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008541</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008541</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147571" alias="GSM8008540_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147571</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008540_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008540: Infected replicate 4; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098384">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098384</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008540</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008540</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147572" alias="GSM8008539_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147572</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008539_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008539: Infected replicate 3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098381">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098381</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008539</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008539</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147573" alias="GSM8008538_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147573</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008538_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008538: Infected replicate 2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098382">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098382</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008538</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008538</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147574" alias="GSM8008537_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147574</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008537_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008537: Infected replicate 1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098387">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098387</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008537</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008537</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147575" alias="GSM8008536_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147575</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008536_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008536: treated Replicate 5; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098385">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098385</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008536</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008536</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147576" alias="GSM8008535_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147576</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008535_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008535: treated Replicate 4; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098386">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098386</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008535</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008535</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147577" alias="GSM8008534_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147577</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008534_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008534: treated Replicate 3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098388">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098388</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008534</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008534</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147578" alias="GSM8008533_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147578</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008533_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008533: treated Replicate 2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098392">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098392</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008533</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008533</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147579" alias="GSM8008532_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147579</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008532_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008532: treated Replicate 1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098390">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098390</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008532</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008532</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147580" alias="GSM8008531_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147580</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008531_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008531: control replicate 5; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098389">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098389</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008531</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008531</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147581" alias="GSM8008530_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147581</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008530_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008530: control replicate 4; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098391">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098391</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008530</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008530</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147582" alias="GSM8008542_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147582</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008542_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008542: infected treated Replicate 1; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098394">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098394</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008542</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008542</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147583" alias="GSM8008543_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147583</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008543_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008543: infected treated Replicate 2; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098393">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098393</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008543</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008543</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147584" alias="GSM8008544_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147584</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008544_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008544: infected treated Replicate 3; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098396">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098396</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008544</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008544</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147585" alias="GSM8008545_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147585</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008545_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008545: infected treated Replicate 4; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098395">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098395</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008545</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008545</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23147586" alias="GSM8008546_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23147586</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8008546_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8008546: infected treated Replicate 5; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP482800">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP482800</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1062772</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20098397">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20098397</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8008546</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8008546</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>Mammalian ribosomal RNA is depleted using the RiboCop kit from Lexogen Illumina's Stranded Total RNA Prep Ligation with Ribo-Zero Plus kit and 10bp unique dual indices</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
