SRS20129650 SAMN39429524 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Riversdale Clinic wc RAV collection_date 2021-08-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H674/2021 isolation_source missing gisaid_accession EPI_ISL_5195379 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H674/2021 host_age 24 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129652 SAMN39429525 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Alma CDC wc AHC collection_date 2021-08-31 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H723/2021 isolation_source missing gisaid_accession EPI_ISL_4884477 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H723/2021 host_age 43 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129653 SAMN39429515 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Kranshoek Clinic wc KSH collection_date 2021-08-20 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H062/2021 isolation_source missing gisaid_accession EPI_ISL_4817001 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H062/2021 host_age 34 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129657 SAMN39429526 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by George Hospital wc GRH collection_date 2021-08-31 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H733/2021 isolation_source missing gisaid_accession EPI_ISL_5195400 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H733/2021 host_age 27 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129658 SAMN39429528 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by 2 Military Hospital wc MAA collection_date 2021-09-02 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H799/2021 isolation_source missing gisaid_accession EPI_ISL_4884441 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H799/2021 host_age 13 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129660 SAMN39429514 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-08-17 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-G702/2021 isolation_source missing gisaid_accession EPI_ISL_4817083 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-G702/2021 host_age 27 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129661 SAMN39429527 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Victoria Hospital wc VHW collection_date 2021-09-02 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H790/2021 isolation_source missing gisaid_accession EPI_ISL_4884483 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H790/2021 host_age 60 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129662 SAMN39429529 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Hillside Clinic wc HIC collection_date 2021-08-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H851/2021 isolation_source missing gisaid_accession EPI_ISL_5195410 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H851/2021 host_age 17 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129664 SAMN39429532 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-09-09 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I435/2021 isolation_source missing gisaid_accession EPI_ISL_4884501 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I435/2021 host_age 87 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129665 SAMN39429530 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2021-08-30 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H865/2021 isolation_source missing gisaid_accession EPI_ISL_5195369 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H865/2021 host_age 59 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129666 SAMN39429531 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-09-08 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I372/2021 isolation_source missing gisaid_accession EPI_ISL_4884497 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I372/2021 host_age 59 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129667 SAMN39429516 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Heidelberg Clinic wc HBC collection_date 2021-08-24 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H229/2021 isolation_source missing gisaid_accession EPI_ISL_4817009 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H229/2021 host_age 21 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129668 SAMN39429533 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-09-09 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I442/2021 isolation_source missing gisaid_accession EPI_ISL_4884503 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I442/2021 host_age 86 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129669 SAMN39429534 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-09-10 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I485/2021 isolation_source missing gisaid_accession EPI_ISL_4884504 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I485/2021 host_age 55 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129670 SAMN39429535 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Ocean View CDC wc OCE collection_date 2021-09-14 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I789/2021 isolation_source missing gisaid_accession EPI_ISL_5195427 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I789/2021 host_age 30 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129671 SAMN39429517 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by 2 Military Hospital wc MAA collection_date 2021-08-26 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H320/2021 isolation_source missing gisaid_accession EPI_ISL_4817015 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H320/2021 host_age 25 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129672 SAMN39429519 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2021-08-20 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H412/2021 isolation_source missing gisaid_accession EPI_ISL_4817019 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H412/2021 host_age 54 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129673 SAMN39429538 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Sedgefield Clinic wc SGE collection_date 2021-09-16 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I905/2021 isolation_source missing gisaid_accession EPI_ISL_5195380 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I905/2021 host_age 48 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129674 SAMN39429537 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Victoria Hospital wc VHW collection_date 2021-09-15 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I845/2021 isolation_source missing gisaid_accession EPI_ISL_5195453 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I845/2021 host_age 51 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129675 SAMN39429518 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Red Cross Children's Hospital wc RXH collection_date 2021-08-21 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H391/2021 isolation_source missing gisaid_accession EPI_ISL_4817018 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H391/2021 host_age unknown host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129676 SAMN39429536 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Groote Schuur Hospital wc GSH collection_date 2021-09-14 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-I798/2021 isolation_source missing gisaid_accession EPI_ISL_5195406 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-I798/2021 host_age 84 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129677 SAMN39429521 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2021-08-24 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H430/2021 isolation_source missing gisaid_accession EPI_ISL_5195425 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H430/2021 host_age 71 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129678 SAMN39429523 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Dysselsdorp Clinic wc DDC collection_date 2021-08-26 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H475/2021 isolation_source missing gisaid_accession EPI_ISL_4817021 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H475/2021 host_age 56 host_sex male sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129679 SAMN39429520 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Mitchells Plain Hospital wc MPH collection_date 2021-08-24 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H428/2021 isolation_source missing gisaid_accession EPI_ISL_4884469 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H428/2021 host_age 72 host_sex female sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated SRS20129680 SAMN39429522 Genomic Surveillance of SARS-CoV-2 in South Africa 2697049 Severe acute respiratory syndrome coronavirus 2 bioproject 805055 collected_by Toekomsrus Clinic wc TKS collection_date 2021-08-24 geo_loc_name South Africa:Western Cape host Homo sapiens host_disease COVID-19 isolate SARS-CoV-2/human/SouthAfrica/NHLS-UCT-GS-H457/2021 isolation_source missing gisaid_accession EPI_ISL_4817020 gisaid_virus_name hCoV-19/SouthAfrica/NHLS-UCT-GS-H457/2021 host_age 56 host_sex unknown sequenced_by Wellcome Centre for Infectious Disease Research in Africa, Department of Pathology, Faculty of Health Sciences, University of Cape Town and National Health Laboratory Service BioSampleModel SARS-CoV-2: clinical or host-associated