Genomic surveillance of SARS-CoV-2 in South Africa

SRX23205373 SCV2-GS-AE58 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129710 SCV2-GS-AE58 SCV2-GS-AE58 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205374 SCV2-GS-AE75 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129711 SCV2-GS-AE75 SCV2-GS-AE75 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205375 SCV2-GS-B903 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129719 SCV2-GS-B903 SCV2-GS-B903 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205376 SCV2-GS-B904 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129718 SCV2-GS-B904 SCV2-GS-B904 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205377 SCV2-GS-B970 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129717 SCV2-GS-B970 SCV2-GS-B970 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205378 SCV2-GS-C006 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129730 SCV2-GS-C006 SCV2-GS-C006 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205379 SCV2-GS-C017 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129729 SCV2-GS-C017 SCV2-GS-C017 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205380 SCV2-GS-C081 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129727 SCV2-GS-C081 SCV2-GS-C081 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205381 SCV2-GS-C082 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129728 SCV2-GS-C082 SCV2-GS-C082 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205382 SCV2-GS-C083 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129731 SCV2-GS-C083 SCV2-GS-C083 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205383 SCV2-GS-E554 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129723 SCV2-GS-E554 SCV2-GS-E554 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205384 SCV2-GS-E847 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129725 SCV2-GS-E847 SCV2-GS-E847 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205385 SCV2-GS-AE83 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129724 SCV2-GS-AE83 SCV2-GS-AE83 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205386 SCV2-GS-F053 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129721 SCV2-GS-F053 SCV2-GS-F053 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205387 SCV2-GS-F233 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129720 SCV2-GS-F233 SCV2-GS-F233 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205388 SCV2-GS-F402 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129726 SCV2-GS-F402 SCV2-GS-F402 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205389 SCV2-GS-F801 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129722 SCV2-GS-F801 SCV2-GS-F801 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205390 SCV2-GS-G627 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129736 SCV2-GS-G627 SCV2-GS-G627 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205391 SCV2-GS-AE86 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129737 SCV2-GS-AE86 SCV2-GS-AE86 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205392 SCV2-GS-B843 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129735 SCV2-GS-B843 SCV2-GS-B843 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205393 SCV2-GS-B864 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129739 SCV2-GS-B864 SCV2-GS-B864 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205394 SCV2-GS-B871 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129732 SCV2-GS-B871 SCV2-GS-B871 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205395 SCV2-GS-B874 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129734 SCV2-GS-B874 SCV2-GS-B874 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205396 SCV2-GS-B891 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129733 SCV2-GS-B891 SCV2-GS-B891 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23205397 SCV2-GS-B897 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20129738 SCV2-GS-B897 SCV2-GS-B897 AMPLICON VIRAL RNA PCR Illumina MiSeq