SRX23223638 4_isolate SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146848 4_isolate 4_isolate AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223639 6_isolate SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146849 6_isolate 6_isolate AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223640 3_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146850 3_sample 3_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223641 4_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146853 4_sample 4_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223642 5_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146851 5_sample 5_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223643 6_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146852 6_sample 6_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223644 7_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146854 7_sample 7_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223645 8_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146855 8_sample 8_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223646 9_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146856 9_sample 9_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223647 10_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146857 10_sample 10_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223648 1_inoculum SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146858 1_inoculum 1_inoculum AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223649 2_inoculum SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146859 2_inoculum 2_inoculum AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223650 7_isolate SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146860 7_isolate 7_isolate AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223651 3_inoculum SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146861 3_inoculum 3_inoculum AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223652 4_inoculum SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146862 4_inoculum 4_inoculum AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223653 1_inoculum-C57/BL6 SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146863 1_inoculum-C57/BL6 1_inoculum-C57/BL6 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223654 2_inoculum-C57/BL6 SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146864 2_inoculum-C57/BL6 2_inoculum-C57/BL6 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223655 3_inoculum-C57/BL6 SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146865 3_inoculum-C57/BL6 3_inoculum-C57/BL6 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223656 4_inoculum-C57/BL6 SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146866 4_inoculum-C57/BL6 4_inoculum-C57/BL6 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223657 5_inoculum-C57/BL6 SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146867 5_inoculum-C57/BL6 5_inoculum-C57/BL6 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223658 9_isolate SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146868 9_isolate 9_isolate AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223659 10_isolate SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146869 10_isolate 10_isolate AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223660 1_inoculum_vero SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146870 1_inoculum_vero 1_inoculum_vero AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223661 2_inoculum_vero SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146873 2_inoculum_vero 2_inoculum_vero AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223662 3_inoculum_vero SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146871 3_inoculum_vero 3_inoculum_vero AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223663 1_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146872 1_sample 1_sample AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23223664 2_sample SRP483810 bp0 Whole genome sequencing of SARS-CoV-2 using ARTIC v4 primers and protocol and the Illumina DNA Prep Kit, the full protocol and pipeline is at https://github.com/GhedinSGS/SARS-CoV-2_analysis SRS20146874 2_sample 2_sample AMPLICON VIRAL RNA PCR Illumina MiSeq