<?xml version="1.0" encoding="UTF-8"?>
<STUDY_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <STUDY center_name="GEO" alias="GSE253521" accession="SRP484387">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP484387</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject" label="primary">PRJNA1066202</EXTERNAL_ID>
      <EXTERNAL_ID namespace="GEO">GSE253521</EXTERNAL_ID>
    </IDENTIFIERS>
    <DESCRIPTOR>
      <STUDY_TITLE>The self-reactive FVIII T cell repertoire in healthy individuals relies on a short set of epitopes and public clonotypes</STUDY_TITLE>
      <STUDY_TYPE existing_study_type="Transcriptome Analysis"/>
      <STUDY_ABSTRACT>Non-mutated FVIII-specific CD4 T cell epitopes have been recently found to contribute to the development of inhibitors in patients with hemophilia A (HA), while auto-reactive CD4 T cells specific to FVIII circulate in the blood of healthy individuals at a frequency close to the foreign protein Ovalbumin. Thus, although FVIII is a self-protein, the central tolerance raised against FVIII appears to be low. In this study, we conducted a comprehensive analysis of the FVIII CD4 T cell repertoire in twenty-nine healthy donors. Sequencing of the CDR3ß TCR region from isolated FVIII-specific CD4 T cells revealed a limited usage and pairing of TRBV and TRBJ genes, as well as a mostly hydrophobic composition of the CDR3ß region according to their auto-reactivity. FVIII repertoire is dominated by a few clonotypes, with only 13 clonotypes accounting for half of the FVIII response. Through a large-scale epitope mapping of the full-length FVIII sequence, we identified 18 immunodominant epitopes located in the A1, A3, C1, and C2 domains and covering half of the T-cell response. These epitopes exhibited a broad specificity for HLA-DR or DP molecules or both. T-cell priming with this reduced set of peptides revealed that highly expanded clonotypes specific to these epitopes were responsible individually for up to 32% of the total FVIII repertoire. These FVIII T cell epitopes and clonotypes were shared among HLA-unrelated donors tested and previously reported HA patients. Our study highlights the role of the auto-reactive T cell response against FVIII in HA and its similarity to the response observed in healthy individuals. Thus, it provides valuable insights for the development of new tolerance induction and deimmunization strategies Overall design: We aimed to characterise the T cell response to rFVIII in vitro, using chicken Ovalbumin (Ova) as a non-self-protein benchmark. Given the low frequency of FVIII-specific T cells in healthy donors, we enriched the CD4 population in vitro with 3-once-per-week rounds of stimulation using autologous DCs loaded with either rFVIII, Ova or KLH as positive control. We analysed their specificity through IFN-? ELISPOT assay and positive T cell lines for each antigen were sorted, using activation-induced markers CD134/CD137 double positive staining, from 4 healhty donors for TCR CDR3ß sequencing. After an extensive epitope mapping on 16 healthy donors, we identified 18 immudominant and immunoprevalent FVIII peptides which are inducing the majority of the CD4 T cell response to FVIII in healthy individuals. In order investigate how representative the response to this 18 sequences was of the total FVIII repertoire, we amplified in vitro the CD4 T cell population from 5 healthy donors for both rFVIII and the pool of 18 FVIII peptides. We then sorted positive T cell lines for both conditions in order to perform TCR CDR3ß sequencing and a comparative analyses of the response.</STUDY_ABSTRACT>
      <CENTER_PROJECT_NAME>GSE253521</CENTER_PROJECT_NAME>
    </DESCRIPTOR>
    <STUDY_LINKS>
      <STUDY_LINK>
        <XREF_LINK>
          <DB>pubmed</DB>
          <ID>38510258</ID>
        </XREF_LINK>
      </STUDY_LINK>
    </STUDY_LINKS>
  </STUDY>
</STUDY_SET>
