<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX23528203" alias="PacBio library, prepared without due respect">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23528203</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB14207070">PacBio library, prepared without due respect</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Plasmid sequencing of miniprepped, restriction digest linearized (SceI) : synthetic plsamid pool of barcodes and ORFs</TITLE>
    <STUDY_REF accession="SRP488028">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP488028</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB14207070">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Plasmids were miniprepped from E. coli using Qiagen miniprep kit, digested using I-SceI, observed to be linear and intact, then prepared for sequencing using PacBio ligation kit. Run on a Sequel 2 by UofArizona Genomics Core. Samples were apparenty not nick-repaired or treated with due respect, and reads appear truncated.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS20377909">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20377909</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|darachm">First_Plasmid_Pool</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>PacBio library, prepared without due respect</LIBRARY_NAME>
        <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>SYNTHETIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Restriction Digest</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <PACBIO_SMRT>
        <INSTRUMENT_MODEL>PacBio RS II</INSTRUMENT_MODEL>
      </PACBIO_SMRT>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23528204" alias="Nanopore library prepared without due respect">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23528204</PRIMARY_ID>
      <SUBMITTER_ID namespace="SUB14207070">Nanopore library prepared without due respect</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>Plasmid sequencing of miniprepped, restriction digest linearized (SceI) : synthetic plsamid pool of barcodes and ORFs</TITLE>
    <STUDY_REF accession="SRP488028">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP488028</PRIMARY_ID>
        <SUBMITTER_ID namespace="SUB14207070">bp0</SUBMITTER_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION>Plasmids were miniprepped from E. coli using Qiagen miniprep kit, digested using I-SceI, observed to be linear and intact, then prepared for sequencing using ONT Nanopore ligation kit. sequencing/sequencing_MIN112_DNA_SQK-Q20EA:FLO-MIN112:SQK-NBD112-24 This time I used nick-repaired or treated with due respect, and many fewer reads appear truncated.</DESIGN_DESCRIPTION>
      <SAMPLE_DESCRIPTOR accession="SRS20377908">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20377908</PRIMARY_ID>
          <SUBMITTER_ID namespace="pda|darachm">Second_Plasmid_Pool</SUBMITTER_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>Nanopore library prepared without due respect</LIBRARY_NAME>
        <LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>SYNTHETIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>Restriction Digest</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <OXFORD_NANOPORE>
        <INSTRUMENT_MODEL>MinION</INSTRUMENT_MODEL>
      </OXFORD_NANOPORE>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
