Genomic surveillance of SARS-CoV-2 in South Africa

SRX23650859 SCV2-GP-K328 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483895 SCV2-GP-K328 SCV2-GP-K328 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650860 SCV2-GP-L107 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483896 SCV2-GP-L107 SCV2-GP-L107 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650861 SCV2-GS-0024 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20484504 SCV2-GS-0024 SCV2-GS-0024 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650862 SCV2-GS-AG46 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483897 SCV2-GS-AG46 SCV2-GS-AG46 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650863 SCV2-GS-AG51 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483898 SCV2-GS-AG51 SCV2-GS-AG51 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650864 SCV2-GS-AG54 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483899 SCV2-GS-AG54 SCV2-GS-AG54 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650865 SCV2-GS-AG60 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483900 SCV2-GS-AG60 SCV2-GS-AG60 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650866 SCV2-GS-AW96 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483901 SCV2-GS-AW96 SCV2-GS-AW96 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650867 SCV2-GS-AW98 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20484505 SCV2-GS-AW98 SCV2-GS-AW98 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650868 SCV2-GS-AX08 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483902 SCV2-GS-AX08 SCV2-GS-AX08 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650869 SCV2-GS-AX11 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483904 SCV2-GS-AX11 SCV2-GS-AX11 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650870 SCV2-GS-AY44 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483903 SCV2-GS-AY44 SCV2-GS-AY44 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650871 SCV2-GP-M067 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20484506 SCV2-GP-M067 SCV2-GP-M067 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650872 SCV2-GS-C144 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483905 SCV2-GS-C144 SCV2-GS-C144 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650873 SCV2-GS-C382 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483906 SCV2-GS-C382 SCV2-GS-C382 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650874 SCV2-GS-C383 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483907 SCV2-GS-C383 SCV2-GS-C383 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650875 SCV2-GS-C385 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20484507 SCV2-GS-C385 SCV2-GS-C385 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650876 SCV2-GS-D686 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483908 SCV2-GS-D686 SCV2-GS-D686 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650877 SCV2-GS-E250 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483910 SCV2-GS-E250 SCV2-GS-E250 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650878 SCV2-GS-F655 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483911 SCV2-GS-F655 SCV2-GS-F655 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650879 SCV2-GS-G073 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483909 SCV2-GS-G073 SCV2-GS-G073 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650880 SCV2-GP-M983 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483912 SCV2-GP-M983 SCV2-GP-M983 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650881 SCV2-GP-N607 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483914 SCV2-GP-N607 SCV2-GP-N607 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650882 SCV2-GP-N637 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20484508 SCV2-GP-N637 SCV2-GP-N637 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650883 SCV2-GP-N669 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483915 SCV2-GP-N669 SCV2-GP-N669 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650884 SCV2-GP-N704 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483913 SCV2-GP-N704 SCV2-GP-N704 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650885 SCV2-GP-N731 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483917 SCV2-GP-N731 SCV2-GP-N731 AMPLICON VIRAL RNA PCR Illumina MiSeq SRX23650886 SCV2-GS-0022 Genomic surveillance of SARS-CoV-2 in South Africa SRP393871 PRJNA805055 CovidSeq_lib_prep_ArticV4.1 sequencing SRS20483916 SCV2-GS-0022 SCV2-GS-0022 AMPLICON VIRAL RNA PCR Illumina MiSeq