<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT alias="GSM1495450" accession="SRX690997" center_name="GEO">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX690997</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1495450</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1495450: LEDGF/p75 (PSIP1) ChIP-Seq; Homo sapiens; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP046006" refname="GSE61003">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP046006</PRIMARY_ID>
      </IDENTIFIERS>
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    <DESIGN>
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          <PRIMARY_ID>SRS693464</PRIMARY_ID>
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      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>30E7 CD4+ T cells were fixed with 1% formaldehyde (25°C, 10 min) and stopped with 0.125M Glycine. Nuclei were sonicated using a Diagenode Bioruptor (Liege) to produce fragments of ~200 bp. LEDGF/p75-bound chromatin fragments were immunoprecipitated with antibody A300-848. Libraries were generated according to the Illumina TruSeq DNA Sample preparation guide. Briefly, the immunoprecipitated DNA was end-repaired, A-tailed and ligated to TruSeq adapters. After PCR amplification with 15 cycles and gel size selection of ~300bp fragments, libraries were captured and sequenced using the Illumina HiSeq 2000.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1495450</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1495450</URL>
        </URL_LINK>
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          <DB>gds</DB>
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    <IDENTIFIERS>
      <PRIMARY_ID>SRX690998</PRIMARY_ID>
      <SUBMITTER_ID namespace="GEO">GSM1495451</SUBMITTER_ID>
    </IDENTIFIERS>
    <TITLE>GSM1495451: Input control; Homo sapiens; ChIP-Seq</TITLE>
    <STUDY_REF accession="SRP046006" refname="GSE61003">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP046006</PRIMARY_ID>
      </IDENTIFIERS>
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    <DESIGN>
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      <SAMPLE_DESCRIPTOR accession="SRS693465">
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          <PRIMARY_ID>SRS693465</PRIMARY_ID>
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      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_STRATEGY>ChIP-Seq</LIBRARY_STRATEGY>
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        <LIBRARY_SELECTION>ChIP</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <SINGLE/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>30E7 CD4+ T cells were fixed with 1% formaldehyde (25°C, 10 min) and stopped with 0.125M Glycine. Nuclei were sonicated using a Diagenode Bioruptor (Liege) to produce fragments of ~200 bp. LEDGF/p75-bound chromatin fragments were immunoprecipitated with antibody A300-848. Libraries were generated according to the Illumina TruSeq DNA Sample preparation guide. Briefly, the immunoprecipitated DNA was end-repaired, A-tailed and ligated to TruSeq adapters. After PCR amplification with 15 cycles and gel size selection of ~300bp fragments, libraries were captured and sequenced using the Illumina HiSeq 2000.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
    <EXPERIMENT_LINKS>
      <EXPERIMENT_LINK>
        <URL_LINK>
          <LABEL>GEO Sample GSM1495451</LABEL>
          <URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1495451</URL>
        </URL_LINK>
      </EXPERIMENT_LINK>
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          <DB>gds</DB>
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    </EXPERIMENT_LINKS>
    <EXPERIMENT_ATTRIBUTES>
      <EXPERIMENT_ATTRIBUTE>
        <TAG>GEO Accession</TAG>
        <VALUE>GSM1495451</VALUE>
      </EXPERIMENT_ATTRIBUTE>
    </EXPERIMENT_ATTRIBUTES>
  </EXPERIMENT>
</EXPERIMENT_SET>
