SRX691029 GSM1495505 SRP046016 PRJNA260073 SRS693496 SAMN03015584 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495505 GSM1495505 GEO Accession GSM1495505 SRX691030 GSM1495506 SRP046016 PRJNA260073 SRS693497 SAMN03015585 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495506 GSM1495506 GEO Accession GSM1495506 SRX691031 GSM1495507 SRP046016 PRJNA260073 SRS693498 SAMN03015586 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495507 GSM1495507 GEO Accession GSM1495507 SRX691032 GSM1495508 SRP046016 PRJNA260073 SRS693499 SAMN03015587 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495508 GSM1495508 GEO Accession GSM1495508 SRX691033 GSM1495509 SRP046016 PRJNA260073 SRS693502 SAMN03015588 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495509 GSM1495509 GEO Accession GSM1495509 SRX691034 GSM1495510 SRP046016 PRJNA260073 SRS693500 SAMN03015589 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495510 GSM1495510 GEO Accession GSM1495510 SRX691035 GSM1495511 SRP046016 PRJNA260073 SRS693501 SAMN03015590 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495511 GSM1495511 GEO Accession GSM1495511 SRX691036 GSM1495512 SRP046016 PRJNA260073 SRS693503 SAMN03015591 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495512 GSM1495512 GEO Accession GSM1495512 SRX691037 GSM1495513 SRP046016 PRJNA260073 SRS693504 SAMN03015592 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495513 GSM1495513 GEO Accession GSM1495513 SRX691038 GSM1495514 SRP046016 PRJNA260073 SRS693505 SAMN03015593 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495514 GSM1495514 GEO Accession GSM1495514 SRX691039 GSM1495515 SRP046016 PRJNA260073 SRS693506 SAMN03015594 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495515 GSM1495515 GEO Accession GSM1495515 SRX691040 GSM1495516 SRP046016 PRJNA260073 SRS693507 SAMN03015595 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495516 GSM1495516 GEO Accession GSM1495516 SRX691041 GSM1495517 SRP046016 PRJNA260073 SRS693508 SAMN03015596 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495517 GSM1495517 GEO Accession GSM1495517 SRX691042 GSM1495518 SRP046016 PRJNA260073 SRS693509 SAMN03015597 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495518 GSM1495518 GEO Accession GSM1495518 SRX691043 GSM1495519 SRP046016 PRJNA260073 SRS693510 SAMN03015598 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495519 GSM1495519 GEO Accession GSM1495519 SRX691044 GSM1495520 SRP046016 PRJNA260073 SRS693511 SAMN03015599 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495520 GSM1495520 GEO Accession GSM1495520 SRX691045 GSM1495521 SRP046016 PRJNA260073 SRS693512 SAMN03015600 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495521 GSM1495521 GEO Accession GSM1495521 SRX691046 GSM1495522 SRP046016 PRJNA260073 SRS693513 SAMN03015601 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495522 GSM1495522 GEO Accession GSM1495522 SRX691047 GSM1495523 SRP046016 PRJNA260073 SRS693515 SAMN03015602 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495523 GSM1495523 GEO Accession GSM1495523 SRX691048 GSM1495524 SRP046016 PRJNA260073 SRS693514 SAMN03015603 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495524 GSM1495524 GEO Accession GSM1495524 SRX691049 GSM1495525 SRP046016 PRJNA260073 SRS693516 SAMN03015604 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495525 GSM1495525 GEO Accession GSM1495525 SRX691050 GSM1495526 SRP046016 PRJNA260073 SRS693517 SAMN03015605 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495526 GSM1495526 GEO Accession GSM1495526 SRX691051 GSM1495527 SRP046016 PRJNA260073 SRS693519 SAMN03015606 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495527 GSM1495527 GEO Accession GSM1495527 SRX691052 GSM1495528 SRP046016 PRJNA260073 SRS693518 SAMN03015607 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495528 GSM1495528 GEO Accession GSM1495528 SRX691053 GSM1495529 SRP046016 PRJNA260073 SRS693520 SAMN03015608 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495529 GSM1495529 GEO Accession GSM1495529 SRX691054 GSM1495530 SRP046016 PRJNA260073 SRS693522 SAMN03015609 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495530 GSM1495530 GEO Accession GSM1495530 SRX691055 GSM1495531 SRP046016 PRJNA260073 SRS693521 SAMN03015582 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495531 GSM1495531 GEO Accession GSM1495531 SRX691056 GSM1495532 SRP046016 PRJNA260073 SRS693523 SAMN03015575 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495532 GSM1495532 GEO Accession GSM1495532 SRX691057 GSM1495533 SRP046016 PRJNA260073 SRS693525 SAMN03015576 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495533 GSM1495533 GEO Accession GSM1495533 SRX691058 GSM1495534 SRP046016 PRJNA260073 SRS693524 SAMN03015577 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495534 GSM1495534 GEO Accession GSM1495534 SRX691059 GSM1495535 SRP046016 PRJNA260073 SRS693526 SAMN03015583 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495535 GSM1495535 GEO Accession GSM1495535 SRX691060 GSM1495536 SRP046016 PRJNA260073 SRS693527 SAMN03015574 OTHER TRANSCRIPTOMIC other Yeast cells were harvested by filtration, flash frozen, and cryogenically pulverized in a Retsch mixer-mill. Mammalian cells were lysed directly in plates with scraping. Footprinting was performed with RNase I (yeast) or MNase (293 cells), monosomes purified on 10-50% sucrose gradients and biotinylated ribosomes purified on streptavidin dynabeads. RNA was extracted with trizol and protected fragments gel purified. Ends were repaired with T4 PNK and ligated to a pre-adenylated linker with T4 RNA Ligase 2. Ligated fragments were gel purified, reverse transcribed and gel purified. The cDNA was circularized then PCR amplified. Illumina HiSeq 2000 gds 301495536 GSM1495536 GEO Accession GSM1495536