SRS20587617 SAMN40082450 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-672-1 time point 0 hrs N1 Ct 27.11953 N2 Ct 0 RNAseP Ct 14.606043 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587618 SAMN40082360 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-561-1 time point 0 hrs N1 Ct 37.209583 N2 Ct 0 RNAseP Ct 20.713326 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587619 SAMN40082454 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-684-1 time point 0 hrs N1 Ct 31.2399 N2 Ct 35.686794 RNAseP Ct 20.039822 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587620 SAMN40082453 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-679-2 time point 72 hrs N1 Ct 24.43213 N2 Ct 26.282452 RNAseP Ct 18.155737 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587621 SAMN40082361 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-565-1 time point 0 hrs N1 Ct 29.318628 N2 Ct 0 RNAseP Ct 17.85552 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587622 SAMN40082365 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-586-1 time point 0 hrs N1 Ct 25.507816 N2 Ct 35.21938 RNAseP Ct 20.348932 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587623 SAMN40082460 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg42 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587624 SAMN40082366 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-593-1 time point 0 hrs N1 Ct 33.843094 N2 Ct 0 RNAseP Ct 24.326773 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587625 SAMN40082371 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-627-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 18.703663 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587626 SAMN40082372 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-629-1 time point 0 hrs N1 Ct 30.02932 N2 Ct 36.24554 RNAseP Ct 21.965845 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587627 SAMN40082433 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-630-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 20.494446 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587628 SAMN40082373 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-630-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 24.35727 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587629 SAMN40082435 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-631-2 time point 72 hrs N1 Ct 33.32135 N2 Ct 0 RNAseP Ct 16.035715 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587630 SAMN40082436 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-635-1 time point 0 hrs N1 Ct 27.737617 N2 Ct 29.924458 RNAseP Ct 24.203865 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587631 SAMN40082441 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-638-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587632 SAMN40082442 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-639-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 20.242113 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587633 SAMN40082443 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-639-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 19.0596 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587634 SAMN40082445 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-650-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.644575 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587635 SAMN40082446 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-658-1 time point 0 hrs N1 Ct 33.880104 N2 Ct 43.20984 RNAseP Ct 18.469007 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587636 SAMN40082448 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-670-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587637 SAMN40082376 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-636-1 time point 0 hrs N1 Ct 41.620518 N2 Ct 0 RNAseP Ct 21.280727 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587638 SAMN40082378 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-639-1 time point 0 hrs N1 Ct 37.53712 N2 Ct 0 RNAseP Ct 21.906824 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587639 SAMN40082381 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-658-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 21.83 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587640 SAMN40082382 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-670-1 time point 0 hrs N1 Ct 30.344412 N2 Ct 0 RNAseP Ct 18.00856 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587641 SAMN40082383 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-672-1 time point 0 hrs N1 Ct 28.897327 N2 Ct 37.14406 RNAseP Ct 19.389803 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587642 SAMN40082388 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-480-1 time point 0 hrs N1 Ct 26.555008 N2 Ct 32.87738 RNAseP Ct 20.250837 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587643 SAMN40082386 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-461-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 19.705519 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587644 SAMN40082389 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-480-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 15.16483 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587645 SAMN40082393 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-500-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 18.892 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587646 SAMN40082394 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-510-1 time point 0 hrs N1 Ct 24.752228 N2 Ct 32.366722 RNAseP Ct 15.812676 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587647 SAMN40082395 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-510-2 time point 72 hrs N1 Ct 31.70009 N2 Ct 41.22538 RNAseP Ct 16.901102 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587648 SAMN40082398 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-530-1 time point 0 hrs N1 Ct 35.95933 N2 Ct 41.741592 RNAseP Ct 20.293016 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587649 SAMN40082399 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-530-2 time point 72 hrs N1 Ct 31.938784 N2 Ct 41.589264 RNAseP Ct 17.649437 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587650 SAMN40082401 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-536-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 37.69397 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587651 SAMN40082403 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-550-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 18.84579 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587652 SAMN40082407 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-561-2 time point 72 hrs N1 Ct 34.016045 N2 Ct 0 RNAseP Ct 17.443598 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587653 SAMN40082406 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-561-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 16.334743 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587654 SAMN40082356 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-530-1 time point 0 hrs N1 Ct 33.578205 N2 Ct 0 RNAseP Ct 18.5283 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587655 SAMN40082410 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-568-1 time point 0 hrs N1 Ct 26.862396 N2 Ct 0 RNAseP Ct 15.216434 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587656 SAMN40082412 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-576-1 time point 0 hrs N1 Ct 28.23212 N2 Ct 36.618607 RNAseP Ct 20.660828 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587657 SAMN40082414 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-583-1 time point 0 hrs N1 Ct 25.954317 N2 Ct 36.836365 RNAseP Ct 20.851074 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587658 SAMN40082418 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-593-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 18.208008 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587659 SAMN40082417 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-586-2 time point 72 hrs N1 Ct 29.581396 N2 Ct 39.477673 RNAseP Ct 18.243061 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587660 SAMN40082421 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-594-2 time point 72 hrs N1 Ct 37.700676 N2 Ct 0 RNAseP Ct 16.105656 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587661 SAMN40082422 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-599-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 16.689672 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587662 SAMN40082424 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-601-1 time point 0 hrs N1 Ct 30.696136 N2 Ct 40.868874 RNAseP Ct 17.33677 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587663 SAMN40082426 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-624-1 time point 0 hrs N1 Ct 0 N2 Ct 44.39467 RNAseP Ct 19.230114 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587664 SAMN40082429 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-627-2 time point 72 hrs N1 Ct 36.72592 N2 Ct 0 RNAseP Ct 22.181887 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20587665 SAMN40082430 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-629-1 time point 0 hrs N1 Ct 31.687166 N2 Ct 0 RNAseP Ct 24.632582 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588729 SAMN40082350 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-461-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 20.775354 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588730 SAMN40082351 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-480-1 time point 0 hrs N1 Ct 24.8388 N2 Ct 37.39081 RNAseP Ct 17.98967 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588731 SAMN40082451 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-672-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 37.994755 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588732 SAMN40082364 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-583-1 time point 0 hrs N1 Ct 33.509277 N2 Ct 42.20268 RNAseP Ct 22.431847 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588733 SAMN40082363 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-576-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 29.65029 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588734 SAMN40082458 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg40 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588735 SAMN40082362 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-568-1 time point 0 hrs N1 Ct 32.084755 N2 Ct 40.11187 RNAseP Ct 19.194357 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588736 SAMN40082368 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-599-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.752884 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588737 SAMN40082352 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-489-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 20.381136 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588738 SAMN40082370 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-624-1 time point 0 hrs N1 Ct 30.426104 N2 Ct 40.01125 RNAseP Ct 22.028023 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588739 SAMN40082374 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-631-1 time point 0 hrs N1 Ct 32.14869 N2 Ct 43.169262 RNAseP Ct 21.29141 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588740 SAMN40082463 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg46 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588741 SAMN40082434 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-631-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588742 SAMN40082440 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-638-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588743 SAMN40082359 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-557-1 time point 0 hrs N1 Ct 44.963413 N2 Ct 0 RNAseP Ct 19.926062 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588744 SAMN40082444 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-650-1 time point 0 hrs N1 Ct 43.08429 N2 Ct 0 RNAseP Ct 15.295586 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588745 SAMN40082439 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-636-2 time point 72 hrs N1 Ct 35.69897 N2 Ct 0 RNAseP Ct 18.476574 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588746 SAMN40082449 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-670-2 time point 72 hrs N1 Ct 26.188704 N2 Ct 29.244493 RNAseP Ct 21.120247 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588747 SAMN40082353 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-500-1 time point 0 hrs N1 Ct 36.69122 N2 Ct 0 RNAseP Ct 30.08867 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588748 SAMN40082384 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-679-1 time point 0 hrs N1 Ct 24.911821 N2 Ct 35.70537 RNAseP Ct 17.832016 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588749 SAMN40082377 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-638-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 23.818848 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588750 SAMN40082379 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-650-1 time point 0 hrs N1 Ct 30.106522 N2 Ct 39.233517 RNAseP Ct 20.406553 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588751 SAMN40082387 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-461-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 19.792175 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588752 SAMN40082354 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-510-1 time point 0 hrs N1 Ct 26.213259 N2 Ct 38.49858 RNAseP Ct 20.769285 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588753 SAMN40082391 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-489-2 time point 72 hrs N1 Ct 34.11303 N2 Ct 0 RNAseP Ct 15.83605 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588754 SAMN40082355 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-525-1 time point 0 hrs N1 Ct 43.315987 N2 Ct 0 RNAseP Ct 19.920876 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588755 SAMN40082405 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-557-2 time point 72 hrs N1 Ct 33.4661 N2 Ct 0 RNAseP Ct 17.14171 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588756 SAMN40082400 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-536-1 time point 0 hrs N1 Ct 35.110558 N2 Ct 0 RNAseP Ct 21.57907 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588757 SAMN40082411 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-568-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 26.459085 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588758 SAMN40082415 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-583-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 37.598965 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588759 SAMN40082413 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-576-2 time point 72 hrs N1 Ct 35.355186 N2 Ct 0 RNAseP Ct 16.689804 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588760 SAMN40082357 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-536-1 time point 0 hrs N1 Ct 31.964706 N2 Ct 43.867092 RNAseP Ct 16.205875 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588761 SAMN40082423 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-599-2 time point 72 hrs N1 Ct 38.39507 N2 Ct 0 RNAseP Ct 17.415272 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588762 SAMN40082425 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-601-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588763 SAMN40082431 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-629-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.379044 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588764 SAMN40082428 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-627-1 time point 0 hrs N1 Ct 38.578117 N2 Ct 0 RNAseP Ct 15.930192 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20588765 SAMN40082432 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-630-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 0 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589448 SAMN40082455 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-684-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 15.5806 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589449 SAMN40082456 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg38 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589450 SAMN40082452 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-679-1 time point 0 hrs N1 Ct 31.881586 N2 Ct 41.79486 RNAseP Ct 15.128575 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589451 SAMN40082461 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg43 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589452 SAMN40082459 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg41 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589453 SAMN40082464 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg47 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589454 SAMN40082367 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-594-1 time point 0 hrs N1 Ct 30.24887 N2 Ct 38.31998 RNAseP Ct 22.1357 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589455 SAMN40082369 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-601-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 23.668375 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589456 SAMN40082438 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-636-1 time point 0 hrs N1 Ct 29.338514 N2 Ct 32.769794 RNAseP Ct 21.793459 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589457 SAMN40082447 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-658-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.308731 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589458 SAMN40082375 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-635-1 time point 0 hrs N1 Ct 32.8956 N2 Ct 44.037384 RNAseP Ct 20.525627 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589459 SAMN40082392 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-500-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 21.660051 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589460 SAMN40082390 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-489-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.234203 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589461 SAMN40082385 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-684-1 time point 0 hrs N1 Ct 31.05843 N2 Ct 35.920845 RNAseP Ct 18.510359 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589462 SAMN40082396 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-525-1 time point 0 hrs N1 Ct 32.405987 N2 Ct 0 RNAseP Ct 24.4294 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589463 SAMN40082402 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-550-1 time point 0 hrs N1 Ct 32.068043 N2 Ct 40.895203 RNAseP Ct 16.691225 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589464 SAMN40082404 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-557-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 16.873854 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589465 SAMN40082409 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-565-2 time point 72 hrs N1 Ct 23.305948 N2 Ct 31.450243 RNAseP Ct 17.874477 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589466 SAMN40082408 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-565-1 time point 0 hrs N1 Ct 33.235847 N2 Ct 44.42861 RNAseP Ct 16.513794 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589467 SAMN40082416 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-586-1 time point 0 hrs N1 Ct 22.702797 N2 Ct 28.854855 RNAseP Ct 17.572098 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589468 SAMN40082427 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-624-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.885588 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20589469 SAMN40082420 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-594-1 time point 0 hrs N1 Ct 31.948015 N2 Ct 0 RNAseP Ct 15.259201 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590192 SAMN40082457 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg39 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590193 SAMN40082437 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-635-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 16.882559 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590194 SAMN40082380 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-655-1 time point 0 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 22.210012 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590195 SAMN40082397 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-525-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 17.943684 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590196 SAMN40082419 1850221 respiratory tract metagenome NO VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale lower respiratory tract biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method lung lavage weight_loss_3_month SOT-593-2 time point 72 hrs N1 Ct 0 N2 Ct 0 RNAseP Ct 16.647127 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590197 SAMN40082358 1850221 respiratory tract metagenome VAP bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale respiratory tract biome env_local_scale nasal biome env_medium not applicable geo_loc_name Colombia: Cundinamarca host Homo sapiens lat_lon 4.86245719 N 74.03084121 W collection_method swab weight_loss_3_month Nasal-550-1 time point 0 hrs N1 Ct 35.065094 N2 Ct 0 RNAseP Ct 20.91384 BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated SRS20590976 SAMN40082462 1850221 respiratory tract metagenome NA bioproject 1079780 PRJNA1079780 collection_date 2021 env_broad_scale not applicable env_local_scale not applicable env_medium not applicable geo_loc_name USA: Maryland host not applicable lat_lon 39.10385290 N 77.19892158 W collection_method not applicable weight_loss_3_month PCR_Neg45 time point NA N1 Ct NA N2 Ct NA RNAseP Ct NA BioSampleModel MIMARKS.survey BioSampleModel MIGS/MIMS/MIMARKS.human-associated