<?xml version="1.0" encoding="UTF-8"?>
<EXPERIMENT_SET xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
  <EXPERIMENT accession="SRX23809454" alias="GSM8122156_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809454</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122156_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122156: Ctrl_ EmptyVector 1 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632335">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632335</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122156</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122156</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809455" alias="GSM8122157_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809455</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122157_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122157: Smarcd1_OverExpression_1 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632336">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632336</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122157</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122157</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809456" alias="GSM8122158_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809456</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122158_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122158: Ctrl_ EmptyVector 2 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632337">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632337</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122158</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122158</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809457" alias="GSM8122159_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809457</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122159_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122159: Smarcd1_OverExpression_2 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632338">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632338</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122159</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122159</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809458" alias="GSM8122160_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809458</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122160_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122160: Ctrl_ EmptyVector 3 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632339">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632339</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122160</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122160</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809459" alias="GSM8122161_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809459</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122161_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122161: Smarcd1_OverExpression_3 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632340">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632340</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122161</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122161</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809460" alias="GSM8122162_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809460</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122162_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122162: Ctrl_KDScr_1 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632341">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632341</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122162</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122162</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809461" alias="GSM8122163_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809461</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122163_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122163: Smarcd1_KD4_1 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632342">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632342</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122163</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122163</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809462" alias="GSM8122164_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809462</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122164_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122164: Smarcd1_KD6_1 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632343">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632343</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122164</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122164</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809463" alias="GSM8122165_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809463</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122165_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122165: Ctrl_KDScr_2 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632344">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632344</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122165</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122165</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809464" alias="GSM8122166_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809464</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122166_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122166: Smarcd1_KD4_2 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632345">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632345</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122166</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122166</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809465" alias="GSM8122167_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809465</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122167_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122167: Smarcd1_KD6_2 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632346">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632346</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122167</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122167</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809466" alias="GSM8122168_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809466</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122168_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122168: Ctrl_KDScr_3 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632347">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632347</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122168</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122168</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809467" alias="GSM8122169_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809467</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122169_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122169: Smarcd1_KD4_3 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632348">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632348</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122169</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122169</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
  <EXPERIMENT accession="SRX23809468" alias="GSM8122170_r1">
    <IDENTIFIERS>
      <PRIMARY_ID>SRX23809468</PRIMARY_ID>
      <EXTERNAL_ID namespace="GEO">GSM8122170_r1</EXTERNAL_ID>
    </IDENTIFIERS>
    <TITLE>GSM8122170: Smarcd1_KD6_3 RNA-Seq on plastic; Mus musculus; RNA-Seq</TITLE>
    <STUDY_REF accession="SRP492817">
      <IDENTIFIERS>
        <PRIMARY_ID>SRP492817</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioProject">PRJNA1082719</EXTERNAL_ID>
      </IDENTIFIERS>
    </STUDY_REF>
    <DESIGN>
      <DESIGN_DESCRIPTION/>
      <SAMPLE_DESCRIPTOR accession="SRS20632350">
        <IDENTIFIERS>
          <PRIMARY_ID>SRS20632350</PRIMARY_ID>
          <EXTERNAL_ID namespace="GEO">GSM8122170</EXTERNAL_ID>
        </IDENTIFIERS>
      </SAMPLE_DESCRIPTOR>
      <LIBRARY_DESCRIPTOR>
        <LIBRARY_NAME>GSM8122170</LIBRARY_NAME>
        <LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY>
        <LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE>
        <LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION>
        <LIBRARY_LAYOUT>
          <PAIRED/>
        </LIBRARY_LAYOUT>
        <LIBRARY_CONSTRUCTION_PROTOCOL>RNA was extracted from cells 24hrs after seededing at 70% confluence. Each biological replicate was seeded from a different pasage of cells on subsequent days. Cells were washed with PBS and then collected in 1ml TriPure isolation reagent, followed by organic extraction with chloroform and precipitation by isopropanol. RNA was then purified using the RNeasy Mini Kit (Qiagen) with on-column DNase digestion. RNA quality was tested using the Agilent 2200 TapeStation electrophoresis system, and samples with an RNA integrity number (RIN) score &gt;7 were sent to the Sequencing Facility at Frederick National Laboratory Preparation of mRNA libraries and mRNA sequencing was performed by the Sequencing Facility using the HiSeq2500 instrument with Illumina TruSeq v4 chemistry.</LIBRARY_CONSTRUCTION_PROTOCOL>
      </LIBRARY_DESCRIPTOR>
    </DESIGN>
    <PLATFORM>
      <ILLUMINA>
        <INSTRUMENT_MODEL>Illumina NovaSeq 6000</INSTRUMENT_MODEL>
      </ILLUMINA>
    </PLATFORM>
  </EXPERIMENT>
</EXPERIMENT_SET>
