SRS20641213 SAMN40192032 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.42 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641214 SAMN40192033 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.389 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 61,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641215 SAMN40192042 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.43 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641216 SAMN40192306 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.904 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641217 SAMN40192307 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.47 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 720,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641218 SAMN40192308 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.833 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 490,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641219 SAMN40192309 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 31.65 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 360,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641220 SAMN40192310 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.11 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 280,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641221 SAMN40192311 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.74 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 490,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641222 SAMN40192060 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.68 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 50,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641223 SAMN40192312 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.062 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641232 SAMN40192321 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4853 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 35,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641233 SAMN40192061 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641234 SAMN40192322 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.144 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641235 SAMN40192323 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.06 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641236 SAMN40192324 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.522 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641237 SAMN40192325 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.4 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 23,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641238 SAMN40192326 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.233 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641239 SAMN40192327 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0728 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641240 SAMN40192392 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.03215 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641241 SAMN40192393 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.042862 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641242 SAMN40192394 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.197 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641243 SAMN40192395 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5386 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641244 SAMN40192396 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.811 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641245 SAMN40192397 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.05 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 88,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641246 SAMN40192398 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.301 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 370,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641247 SAMN40192399 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.1067 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641248 SAMN40192400 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.498 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641250 SAMN40192069 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641251 SAMN40192402 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.1 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641252 SAMN40192403 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.58 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641224 SAMN40192313 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 34.78 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641225 SAMN40192314 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.588 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641226 SAMN40192315 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641227 SAMN40192316 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.77 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641228 SAMN40192317 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .650 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641229 SAMN40192318 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.793 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641230 SAMN40192319 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.21 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641231 SAMN40192320 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.388 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641249 SAMN40192401 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.81 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641253 SAMN40192404 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.9 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641254 SAMN40192405 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641255 SAMN40192406 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-06 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.44 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231206 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641256 SAMN40192407 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.18 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 78,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641257 SAMN40192408 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.36 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 33,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641258 SAMN40192409 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.04 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641259 SAMN40192410 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.79 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641260 SAMN40192411 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641261 SAMN40192070 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.3836 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 58,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641262 SAMN40192412 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641263 SAMN40192413 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 27.06 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641264 SAMN40192121 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-25 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 10.894 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231225 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641265 SAMN40192041 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.15 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641266 SAMN40192122 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.798 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,400 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641267 SAMN40192123 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.1026 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 1,500,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641268 SAMN40192125 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.89 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641269 SAMN40192124 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.013 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 77,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641270 SAMN40192126 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.301 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 540,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641271 SAMN40192127 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.74 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 85,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641272 SAMN40192128 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5645 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641273 SAMN40192129 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 79,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641274 SAMN40192130 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.898 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641275 SAMN40192131 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.93 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 400,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641276 SAMN40192132 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.47 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641277 SAMN40192133 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 35.22 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641278 SAMN40192134 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641279 SAMN40192135 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.435 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 37,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641280 SAMN40192136 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.374 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641281 SAMN40192137 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.38 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641282 SAMN40192138 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.79324 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641283 SAMN40192139 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.1 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641284 SAMN40192140 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.731692 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641285 SAMN40192141 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0721 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 570,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641286 SAMN40192043 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-07 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.615 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240107 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641287 SAMN40192142 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.06 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641288 SAMN40192143 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641289 SAMN40192144 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641290 SAMN40192145 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.3 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641291 SAMN40192146 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.132896 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 310,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641292 SAMN40192147 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.52 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641293 SAMN40192148 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.352 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641294 SAMN40192150 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.656 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 330,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641295 SAMN40192149 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .623 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 67,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641296 SAMN40192151 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.792 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641297 SAMN40192044 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-07 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.47 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240107 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 21,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641298 SAMN40192152 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641299 SAMN40192153 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.313 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 230,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641300 SAMN40192176 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.531 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641301 SAMN40192177 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.08 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641302 SAMN40192178 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.41 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 390,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641303 SAMN40192179 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.349 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641304 SAMN40192180 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.1 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 350,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641305 SAMN40192181 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.824 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 470,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641306 SAMN40192047 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.193 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641307 SAMN40192183 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.64 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641308 SAMN40192182 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-05 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.239 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240105 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641309 SAMN40192184 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.2404 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 93,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641310 SAMN40192185 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.255 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 270,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641311 SAMN40192186 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.692 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641312 SAMN40192187 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.247276 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 62,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641313 SAMN40192189 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.051 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 19,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641314 SAMN40192188 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.06 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 92,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641315 SAMN40192191 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-05 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.787 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240105 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 65,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641316 SAMN40192190 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.197 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641317 SAMN40192048 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.07 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 890,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641318 SAMN40192192 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.74407 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641319 SAMN40192193 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641320 SAMN40192194 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.617 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 370,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641321 SAMN40192195 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.16 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641322 SAMN40192196 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.69285 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 64,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641323 SAMN40192197 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641324 SAMN40192241 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0823 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641325 SAMN40192053 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.2 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 31,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641326 SAMN40192242 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.51 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641327 SAMN40192244 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-01 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.415 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240101 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641328 SAMN40192243 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.181 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641329 SAMN40192245 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.54 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 30,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641330 SAMN40192246 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.108 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 85,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641331 SAMN40192247 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.804 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641332 SAMN40192248 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.783 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 71,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641333 SAMN40192249 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.423 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641334 SAMN40192250 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.848 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 76,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641335 SAMN40192251 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.233 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641336 SAMN40192054 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.901 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 22,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641337 SAMN40192252 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.808 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 330,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641338 SAMN40192253 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641339 SAMN40192254 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.539 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641340 SAMN40192255 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.6219 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 230,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641341 SAMN40192256 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.414 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641342 SAMN40192257 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-29 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20231229 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641343 SAMN40192258 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.595 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,700 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641344 SAMN40192259 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.759 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 51,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641345 SAMN40192260 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.7 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641346 SAMN40192261 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.16 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641347 SAMN40192055 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.4 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641348 SAMN40192328 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.387 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641349 SAMN40192329 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.858 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641350 SAMN40192331 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.558 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641351 SAMN40192330 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.41 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641352 SAMN40192035 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641353 SAMN40192062 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5489 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641354 SAMN40192332 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.318 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 10,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641355 SAMN40192333 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.241 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641356 SAMN40192334 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.735 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641357 SAMN40192335 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4692 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641358 SAMN40192336 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .630 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 84,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641359 SAMN40192337 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.1 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 89,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641360 SAMN40192338 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.97289 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641361 SAMN40192339 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641362 SAMN40192340 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641363 SAMN40192341 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.35 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 85,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641364 SAMN40192063 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.309 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641365 SAMN40192342 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.4 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 76,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641366 SAMN40192343 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.0528 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641367 SAMN40192344 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.471 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,300 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641368 SAMN40192345 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641369 SAMN40192346 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.49 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 30,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641370 SAMN40192347 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.85 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641371 SAMN40192348 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.285 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641372 SAMN40192414 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.612 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 73,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641373 SAMN40192415 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.688525 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 26,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641374 SAMN40192416 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.47 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641375 SAMN40192417 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-17 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 12.08 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20231217 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641376 SAMN40192418 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 36.03 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 47,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641377 SAMN40192419 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.257 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641378 SAMN40192420 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.911 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641379 SAMN40192421 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641380 SAMN40192071 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.026 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 80,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641381 SAMN40192422 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.71 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641382 SAMN40192423 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-13 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.61 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231213 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641383 SAMN40192424 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.79 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641384 SAMN40192425 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.665 MGD instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641385 SAMN40192426 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.77 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 79,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641386 SAMN40192427 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.392 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641387 SAMN40192428 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.224 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641388 SAMN40192429 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.472 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 410,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641389 SAMN40192430 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-22 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.197 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20231222 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641390 SAMN40192036 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.844 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641391 SAMN40192072 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.81 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 360,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641392 SAMN40192073 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.318 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641393 SAMN40192074 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.01 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 16,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641394 SAMN40192075 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.419 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 80,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641395 SAMN40192076 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.198 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641396 SAMN40192154 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.069 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641397 SAMN40192155 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-01 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.3 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240101 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 91,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641398 SAMN40192156 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.921 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 350,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641399 SAMN40192157 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.66 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641400 SAMN40192159 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.444 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641401 SAMN40192160 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641402 SAMN40192158 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.9 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 510,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641403 SAMN40192161 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.609 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641404 SAMN40192045 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-07 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 53.43 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240107 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641405 SAMN40192162 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.13902 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641406 SAMN40192163 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641407 SAMN40192164 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.304 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 390,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641408 SAMN40192165 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5845 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 370,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641409 SAMN40192166 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.151 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641410 SAMN40192167 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.42 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641411 SAMN40192168 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.897 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 400,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641412 SAMN40192169 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.63 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 350,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641413 SAMN40192170 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.251 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641414 SAMN40192171 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.1 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641415 SAMN40192172 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.99 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 31,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641416 SAMN40192046 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-07 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 17.1 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240107 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641417 SAMN40192174 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.229 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 770,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641418 SAMN40192198 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-01 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.957 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240101 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641419 SAMN40192175 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.164 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641420 SAMN40192173 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4954 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 720,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641421 SAMN40192201 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .628 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 310,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641422 SAMN40192199 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.517 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 9,600,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641423 SAMN40192200 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.1 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 98,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641424 SAMN40192049 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.739 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641425 SAMN40192202 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.7 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 460,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641426 SAMN40192203 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.1987 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641427 SAMN40192204 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.42 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 82,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641428 SAMN40192205 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.288 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 270,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641429 SAMN40192206 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.994 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641430 SAMN40192208 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.058 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 24,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641431 SAMN40192207 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.218 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641432 SAMN40192209 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.1128 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641433 SAMN40192210 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.973 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 470,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641434 SAMN40192050 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.698 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641435 SAMN40192211 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.72 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641436 SAMN40192212 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.23 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641437 SAMN40192213 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5586 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641438 SAMN40192214 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.681 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641439 SAMN40192215 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.15 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 230,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641440 SAMN40192216 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.07 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641441 SAMN40192217 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641442 SAMN40192218 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-25 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 15.8 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20231225 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641443 SAMN40192219 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.972 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 77,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641444 SAMN40192264 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-01 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.416 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240101 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641445 SAMN40192262 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-29 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.247 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20231229 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641446 SAMN40192263 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.182 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641447 SAMN40192265 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SQ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.51 instantaneous_flow NaN ww_population 23194 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SQ20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641448 SAMN40192266 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 52.04 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 57,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641449 SAMN40192267 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641450 SAMN40192269 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 34.69 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641451 SAMN40192268 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.559 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641452 SAMN40192270 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.98 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 310,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641453 SAMN40192271 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.355 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 84,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641454 SAMN40192056 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.02389 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641455 SAMN40192272 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.87 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641456 SAMN40192274 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.432 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641457 SAMN40192273 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.19 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641458 SAMN40192275 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.226 instantaneous_flow NaN ww_population 4779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TP20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641459 SAMN40192276 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.188 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641460 SAMN40192277 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-03 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.1 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20240103 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 430,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641461 SAMN40192278 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.215 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 28,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641462 SAMN40192279 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-22 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.1 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20231222 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 48,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641463 SAMN40192280 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.614 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641464 SAMN40192281 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.631MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 900,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641465 SAMN40192057 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.94 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 75,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641466 SAMN40192282 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.601 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641467 SAMN40192283 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.697 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 550,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641468 SAMN40192349 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.346 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641469 SAMN40192350 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.89267 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 58,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641470 SAMN40192351 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Jackson, county isolation_source wastewater collection_site_id WL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.083 ww_population 1536 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id WL20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641471 SAMN40192352 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.7 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641472 SAMN40192064 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6017 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641473 SAMN40192353 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-13 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.552 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20231213 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641474 SAMN40192354 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-12 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.287 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20231212 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641475 SAMN40192356 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-13 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.289 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20231213 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 31,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641476 SAMN40192355 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.001 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641477 SAMN40192357 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.451 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 430,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641478 SAMN40192358 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.87 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641479 SAMN40192359 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.281 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641480 SAMN40192360 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.591 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641481 SAMN40192361 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.969 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641482 SAMN40192065 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.168 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 63,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641483 SAMN40192362 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641484 SAMN40192363 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.3 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 43,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641485 SAMN40192364 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .719 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641486 SAMN40192366 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-11 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 4.02 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231211 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 83,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641487 SAMN40192369 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.02 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641488 SAMN40192365 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.146 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641489 SAMN40192367 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.991 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 80,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641490 SAMN40192368 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0151 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 67,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641491 SAMN40192370 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id LF project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 31429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LF20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641492 SAMN40192077 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.401 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 22,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641493 SAMN40192079 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.42 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 55,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641494 SAMN40192078 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.14 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 13,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641495 SAMN40192080 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 55.3 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 56,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641496 SAMN40192081 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.691 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641497 SAMN40192082 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id UTEP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 5818 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UTEP20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641498 SAMN40192037 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.1 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 150,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641499 SAMN40192083 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.82 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 67,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641500 SAMN40192085 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.97 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,400 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641501 SAMN40192084 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.15 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 17,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641502 SAMN40192086 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.4766 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,100 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641503 SAMN40192087 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.59 instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 20,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641504 SAMN40192089 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.502 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 69,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641505 SAMN40192088 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.12 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 220,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641506 SAMN40192090 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.68 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641507 SAMN40192091 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.188 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,800 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641508 SAMN40192038 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Garfield, county isolation_source wastewater collection_site_id GS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.7 MGD instantaneous_flow NaN ww_population 16714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GS20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 55,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641509 SAMN40192092 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.398 instantaneous_flow NaN ww_population 9286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SW20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,600 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641510 SAMN40192093 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id NW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.453 instantaneous_flow NaN ww_population 10000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id NW20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 8,500 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641511 SAMN40192094 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Boulder Weld, county isolation_source wastewater collection_site_id SK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.68 instantaneous_flow NaN ww_population 75544 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SK20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 27,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641512 SAMN40192095 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.39 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 36,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641513 SAMN40192096 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id OU project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.181 instantaneous_flow NaN ww_population 2152 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id OU20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 4,300 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641514 SAMN40192098 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.19 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 45,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641515 SAMN40192097 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.877 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641516 SAMN40192220 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.801 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 710,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641517 SAMN40192221 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 33.59 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641518 SAMN40192051 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 36.6 instantaneous_flow NaN ww_population 303855 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SE20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 55,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641519 SAMN40192222 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.484 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641520 SAMN40192223 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.58 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 450,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641521 SAMN40192224 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.168 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 340,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641522 SAMN40192225 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.726 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 76,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641523 SAMN40192226 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Chaffee, county isolation_source wastewater collection_site_id CS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.455 instantaneous_flow NaN ww_population 19286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CS20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 410,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641524 SAMN40192227 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id CT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.3 instantaneous_flow NaN ww_population 60571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CT20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641525 SAMN40192228 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.002 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641526 SAMN40192229 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 25.47 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 88,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641527 SAMN40192230 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.851 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 410,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641528 SAMN40192231 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.05 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641529 SAMN40192034 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.426 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 55,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641530 SAMN40192052 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.78 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 38,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641531 SAMN40192232 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.68 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 98,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641532 SAMN40192233 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-25 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.826 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20231225 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 310,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641533 SAMN40192234 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-27 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.951 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20231227 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 210,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641534 SAMN40192236 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Denver, county isolation_source wastewater collection_site_id SN project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 23.33 instantaneous_flow NaN ww_population 709904 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SN20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641535 SAMN40192235 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.423 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641536 SAMN40192237 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-26 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231226 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641537 SAMN40192238 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.83322 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 140,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641538 SAMN40192239 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id WS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.319 instantaneous_flow NaN ww_population 20000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WS20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641539 SAMN40192240 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-02 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.385 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20240102 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 300,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641540 SAMN40192284 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6661 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 180,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641541 SAMN40192285 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.006272 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641542 SAMN40192286 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Morgan, county isolation_source wastewater collection_site_id BH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.465 instantaneous_flow NaN ww_population 12000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BH20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 49,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641543 SAMN40192287 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.718 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 340,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641544 SAMN40192289 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Broomfield, county isolation_source wastewater collection_site_id SC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.72679 instantaneous_flow NaN ww_population 53356 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SC20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641545 SAMN40192290 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.127 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 300,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641546 SAMN40192291 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5126 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641547 SAMN40192288 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.285 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 790,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641548 SAMN40192058 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Otero, county isolation_source wastewater collection_site_id LJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.908 instantaneous_flow NaN ww_population 29643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LJ20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 100,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641549 SAMN40192292 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.434 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 290,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641550 SAMN40192293 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.552 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 200,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641551 SAMN40192295 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.5 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 84,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641552 SAMN40192296 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Jefferson, county isolation_source wastewater collection_site_id SM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow missing instantaneous_flow missing ww_population 345454 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SM20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc missing ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641553 SAMN40192294 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id BR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 28571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id BR20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641554 SAMN40192297 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id SD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.95 instantaneous_flow NaN ww_population 102204 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SD20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 600,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641555 SAMN40192299 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.27 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641556 SAMN40192300 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Mesa, county isolation_source wastewater collection_site_id GJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.36 instantaneous_flow NaN ww_population 89286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id GJ20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 350,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641557 SAMN40192298 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Elbert, county isolation_source wastewater collection_site_id EL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.278 ww_population 3571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id EL20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641558 SAMN40192301 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.9 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641559 SAMN40192059 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 8.69 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 96,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641560 SAMN40192303 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.9 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 15,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641561 SAMN40192302 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-20 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.13 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20231220 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 260,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641562 SAMN40192304 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.588 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 550,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641563 SAMN40192305 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Montrose, county isolation_source wastewater collection_site_id MT project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.904 instantaneous_flow NaN ww_population 30857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id MT20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 250,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641564 SAMN40192371 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SH project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.312 instantaneous_flow NaN ww_population 92127 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SH20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 95,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641565 SAMN40192066 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.335 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 53,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641566 SAMN40192372 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.65 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641568 SAMN40192375 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.69 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 2,200 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641569 SAMN40192373 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6472 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 130,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641570 SAMN40192376 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.6 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 39,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641571 SAMN40192377 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.303 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 87,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641572 SAMN40192379 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.291 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 390,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641573 SAMN40192378 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.899 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 91,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641574 SAMN40192380 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.12 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 67,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641575 SAMN40192381 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.67 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 350,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641576 SAMN40192067 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.986 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 46,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641577 SAMN40192382 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-19 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id CK project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.24 instantaneous_flow NaN ww_population 34286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CK20231219 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 42,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641567 SAMN40192374 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.04 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641578 SAMN40192383 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Routt, county isolation_source wastewater collection_site_id SS project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.464 instantaneous_flow NaN ww_population 43741 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SS20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 340,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641579 SAMN40192384 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-17 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.63 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20231217 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 110,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641580 SAMN40192385 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.286 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 380,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641581 SAMN40192386 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Larimer Weld, county isolation_source wastewater collection_site_id LC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.029 instantaneous_flow NaN ww_population 7946 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LC20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641582 SAMN40192387 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id UB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.946 instantaneous_flow NaN ww_population 35643 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id UB20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641583 SAMN40192388 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id CM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.276 instantaneous_flow NaN ww_population 7857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CM20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 86,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641584 SAMN40192389 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-14 geo_loc_name USA: Colorado, Ouray, county isolation_source wastewater collection_site_id RW project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow NaN instantaneous_flow 0.1976 ww_population 1386 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type grab ww_sample_duration 0 ww_surv_system_sample_id RW20231214 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 630,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641585 SAMN40192390 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id SV project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.607 instantaneous_flow NaN ww_population 17571 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type missing ww_sample_duration missing ww_surv_system_sample_id SV20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 300,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641586 SAMN40192391 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-18 geo_loc_name USA: Colorado, Summit, county isolation_source wastewater collection_site_id FC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.5248 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id FC20231218 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 300,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641587 SAMN40192068 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id LA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.655 instantaneous_flow NaN ww_population 66429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id LA20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 44,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641588 SAMN40192099 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-08 geo_loc_name USA: Colorado, La Plata, county isolation_source wastewater collection_site_id ST project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.443 instantaneous_flow NaN ww_population 23429 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ST20240108 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 40,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641589 SAMN40192100 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Archuleta, county isolation_source wastewater collection_site_id PG project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.930888 instantaneous_flow NaN ww_population 27857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PG20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 97,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641590 SAMN40192101 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.719 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 160,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641591 SAMN40192039 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Alamosa, county isolation_source wastewater collection_site_id AL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.83 instantaneous_flow NaN ww_population 18364 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AL20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 170,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641592 SAMN40192102 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id ER project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.91 instantaneous_flow NaN ww_population 13779 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id ER20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 69,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641593 SAMN40192104 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SL project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.5 instantaneous_flow NaN ww_population 17601 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SL20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 52,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641594 SAMN40192103 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Pitkin, county isolation_source wastewater collection_site_id AP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.285 instantaneous_flow NaN ww_population 5500 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AP20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 56,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641595 SAMN40192105 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 16.7 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 78,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641596 SAMN40192107 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 5.667 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641597 SAMN40192106 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Adams Arapahoe, county isolation_source wastewater collection_site_id SA project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.0083 instantaneous_flow NaN ww_population 268004 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SA20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 81,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641598 SAMN40192108 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, Montezuma, county isolation_source wastewater collection_site_id CZ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.64 instantaneous_flow NaN ww_population 11214 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id CZ20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641599 SAMN40192109 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-10 geo_loc_name USA: Colorado, Las Animas, county isolation_source wastewater collection_site_id TD project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 1.14 instantaneous_flow NaN ww_population 14286 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TD20240110 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641600 SAMN40192110 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-09 geo_loc_name USA: Colorado, El Paso, county isolation_source wastewater collection_site_id TM project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.183 instantaneous_flow NaN ww_population 5936 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TM20240109 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 190,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641601 SAMN40192111 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-11 geo_loc_name USA: Colorado, Adams, county isolation_source wastewater collection_site_id SP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 3.83 instantaneous_flow NaN ww_population 54561 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SP20240111 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 11,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641602 SAMN40192040 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-04 geo_loc_name USA: Colorado, Boulder, county isolation_source wastewater collection_site_id SB project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 9.02 instantaneous_flow NaN ww_population 89383 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SB20240104 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 320,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641603 SAMN40192112 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-12 geo_loc_name USA: Colorado, Delta, county isolation_source wastewater collection_site_id DE project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.788 instantaneous_flow NaN ww_population 6857 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id DE20240112 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 6,400 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641604 SAMN40192113 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-14 geo_loc_name USA: Colorado, Weld, county isolation_source wastewater collection_site_id SJ project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 7.96 instantaneous_flow NaN ww_population 83319 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SJ20240114 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641605 SAMN40192114 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-15 geo_loc_name USA: Colorado, San Miguel, county isolation_source wastewater collection_site_id TR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 0.684 instantaneous_flow NaN ww_population 15000 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id TR20240115 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 370,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641606 SAMN40192116 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-15 geo_loc_name USA: Colorado, Douglas, county isolation_source wastewater collection_site_id PC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 6.1 instantaneous_flow NaN ww_population 34786 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id PC20240115 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 95,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641607 SAMN40192115 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-15 geo_loc_name USA: Colorado, Arapahoe Jefferson, county isolation_source wastewater collection_site_id SR project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 18.1 instantaneous_flow NaN ww_population 247443 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SR20240115 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 60,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641608 SAMN40192117 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-15 geo_loc_name USA: Colorado, Pueblo, county isolation_source wastewater collection_site_id SO project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 11.852 instantaneous_flow NaN ww_population 96515 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SO20240115 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 32,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641609 SAMN40192118 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2024-01-16 geo_loc_name USA: Colorado, Teller, county isolation_source wastewater collection_site_id WP project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow .653 MGD instantaneous_flow NaN ww_population 6379 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id WP20240116 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 34,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641610 SAMN40192119 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-21 geo_loc_name USA: Colorado, Larimer, county isolation_source wastewater collection_site_id SI project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.56 instantaneous_flow NaN ww_population 26621 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id SI20231221 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 240,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance SRS20641611 SAMN40192120 SARS-CoV-2: wastewater surveillance sample from Wastewater metagenome 527639 wastewater metagenome bioproject 850375 collection_date 2023-12-28 geo_loc_name USA: Colorado, Arapahoe, county isolation_source wastewater collection_site_id AC project_name SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads collected_by CDPHE purpose_of_ww_sampling public health surveillance community-level ww_sample_site wastewater treatment plant ww_flow 2.2 instantaneous_flow NaN ww_population 25714 ww_population_source census blocks clipped to wastewater service area polygon ww_sample_matrix raw wastewater ww_sample_type composite ww_sample_duration 24 hours ww_surv_system_sample_id AC20231228 concentration_method Ceres Nanosciences Nanotrap extraction_method Thermo Fisher Scientific King Fisher extraction extraction_control MHV ww_surv_target_1 SARS-CoV-2 ww_surv_target_1_known_present no ww_surv_target_1_conc 120,000 ww_surv_target_1_conc_unit copies/L ww_surv_target_1_gene N2 purpose_of_ww_sequencing diversity of mutations across entire genome sequenced_by CDPHE BioSampleModel SARS-CoV-2: wastewater surveillance